Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002113.1

Orthogroup ID

OG0013803

Physical Location & Seq

Genomic Coordinates Reverse (-)

34760 .. 36421

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002113.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggcttcctccgaagaccaccatccctaccgccccacatcgaaaccctccaagcctttttcccttaccaacttttccacatggaaaataaaagccaacaacgcctacaccttgccactcatcctcttcctgtgcatcttctcttactacttcggcctctggcaacacagcagcaccgccccctccaccaccaccaccaccacctccgccctcaaccaacttccgtgtaactcccccgatacaaccctaaccaaaaaccctaaaaaagccctagatttcgccacccaccacaaccctaacttcgccatcaacatttccaaacacaacactcccaaaacctaccctccctgcgacgtcaagtacagtgagtacaccccatgcgaggacgcgaagcgatccttgaaattcgagagggatagactgatatacagggagaggcactgtccagctcaggatgagcttctcaagtgccgtgttccggcacctcacggctaccggaacacctttacttggcccaaaagtagagatctggcgtggtacgccaatgttccgcacaaggagttgacagtggagaaggcggtgcagaattggattatataccaaggcgaccggtttaagttccccggcggtggaaccatgtttccgaatggcgccgatgcctacattgatgatattgggaagttgatcaatctcaaggacgggtctattcggaccgccattgatacaggctgtggggttgctagttggggagcttatctattgtcccgggatattctaccaatgtctttcgcgccaagagacacacatgaagcccaagtccaattcgctctcgagcgaggagtacccgctctcatcggcgtcattgcgtcgaaaagacttccttacccttctagagcctttgacatggctcattgctctcgttgcctcattccttggggccaatacggtactttcaccttcaaatatttatttttcggaaacgaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

329

Amino Acids

37.34

Weight (kDa)

9.09

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29090 FvH4_7g29090
malus_domestica	MD01G1197400.v1.1 MD07G1265000.v1.1
prunus_persica	Prupe.2G290800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376801
rosa_laevigata	RLG00000026569
rosa_multiflora	Rmu_co8346801.1_g000001 Rmu_co8475237.1_g000001 Rmu_sc0002113.1_g000007
rosa_roxburghii	Rroxscaffold_4G00281710
rosa_rugosa	Rorug01G0398500
rosa_samantha	Rh1AG415800 Rh1BG375200 Rh1CG389000 Rh1DG405800
rosa_wichuraiana	Rw1G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	357
AccB1I	GGYRCC	2 cut(s)	481, 650
AccBSI	CCGCTC	1 cut(s)	848
AccII	CGCG	2 cut(s)	389, 791
AciI	CCGC	8 cut(s)	31, 177, 207, 551, 578, 627, 714, 846
AclWI	GGATC	1 cut(s)	390
AcsI	RAATTY	2 cut(s)	404, 983
AcyI	GRCGYC	3 cut(s)	354, 651, 858
AfaI	GTAC	5 cut(s)	362, 371, 539, 843, 949
AfiI	CCNNNNNNNGG	4 cut(s)	382, 478, 510, 629
AgeI	ACCGGT	1 cut(s)	609
AgsI	TTSAA	2 cut(s)	403, 961
AloI	GAACNNNNNNTCC	2 cut(s)	625, 657
AluBI	AGCT	3 cut(s)	449, 460, 752
AluI	AGCT	3 cut(s)	449, 460, 752
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	1 cut(s)	390
Ama87I	CYCGRG	2 cut(s)	765, 830
AoxI	GGCC	3 cut(s)	154, 512, 937
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	2 cut(s)	404, 983
AsiGI	ACCGGT	1 cut(s)	609
AspLEI	GCGC	2 cut(s)	653, 793
AspS9I	GGNCC	3 cut(s)	513, 711, 937
AsuC2I	CCSGG	3 cut(s)	624, 766, 767
AsuHPI	GGTGA	1 cut(s)	946
AvaI	CYCGRG	2 cut(s)	765, 830
AvaII	GGWCC	1 cut(s)	711
BanI	GGYRCC	2 cut(s)	481, 650
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	30, 314
BceAI	ACGGC	2 cut(s)	456, 505
BclI	TGATCA	1 cut(s)	684
BcnI	CCSGG	3 cut(s)	624, 766, 767
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	3 cut(s)	272, 741, 891
BfoI	RGCGCY	1 cut(s)	654
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	3 cut(s)	624, 766, 767
Bme18I	GGWCC	1 cut(s)	711
BmeT110I	CYCGRG	2 cut(s)	765, 830
BmgT120I	GGNCC	3 cut(s)	513, 711, 937
BmiI	GGNNCC	4 cut(s)	483, 634, 652, 938
BmrFI	CCNGG	3 cut(s)	624, 766, 767
BmsI	GCATC	2 cut(s)	144, 646
BpiI	GAAGAC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	449, 677
BpuMI	CCSGG	3 cut(s)	624, 766, 767
BsaHI	GRCGYC	3 cut(s)	354, 651, 858
BsaJI	CCNNGG	4 cut(s)	601, 622, 765, 932
BsaWI	WCCGGW	2 cut(s)	495, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	4 cut(s)	382, 478, 510, 629
Bse118I	RCCGGY	1 cut(s)	609
Bse3DI	GCAATG	2 cut(s)	861, 910
BseDI	CCNNGG	4 cut(s)	601, 622, 765, 932
BseGI	GGATG	3 cut(s)	22, 120, 460
BseLI	CCNNNNNNNGG	4 cut(s)	382, 478, 510, 629
BseMI	GCAATG	2 cut(s)	861, 910
BseMII	CTCAG	1 cut(s)	464
BseRI	GAGGAG	1 cut(s)	852
BseXI	GCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	602
Bsh1236I	CGCG	2 cut(s)	389, 791
Bsh1285I	CGRYCG	1 cut(s)	610
BshFI	GGCC	3 cut(s)	156, 514, 939
BshNI	GGYRCC	2 cut(s)	481, 650
BshTI	ACCGGT	1 cut(s)	609
BsiEI	CGRYCG	1 cut(s)	610
BsiHKCI	CYCGRG	2 cut(s)	765, 830
BsiSI	CCGG	5 cut(s)	479, 496, 610, 624, 766
BslFI	GGGAC	1 cut(s)	748
BslI	CCNNNNNNNGG	4 cut(s)	382, 478, 510, 629
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	748
BsnI	GGCC	3 cut(s)	156, 514, 939
BsoBI	CYCGRG	2 cut(s)	765, 830
Bsp143I	GATC	3 cut(s)	395, 526, 684
BspACI	CCGC	8 cut(s)	31, 177, 207, 551, 578, 627, 714, 846
BspANI	GGCC	3 cut(s)	156, 514, 939
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	2 cut(s)	389, 791
BspLI	GGNNCC	4 cut(s)	483, 634, 652, 938
BspPI	GGATC	1 cut(s)	390
BspT107I	GGYRCC	2 cut(s)	481, 650
BsrBI	CCGCTC	1 cut(s)	848
BsrDI	GCAATG	2 cut(s)	861, 910
BsrFI	RCCGGY	1 cut(s)	609
BssAI	RCCGGY	1 cut(s)	609
BssECI	CCNNGG	4 cut(s)	601, 622, 765, 932
BssMI	GATC	3 cut(s)	395, 526, 684
BssNI	GRCGYC	3 cut(s)	354, 651, 858
BssT1I	CCWWGG	2 cut(s)	601, 932
Bst4CI	ACNGT	4 cut(s)	365, 443, 568, 947
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	3 cut(s)	354, 651, 858
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	3 cut(s)	22, 120, 460
BstFNI	CGCG	2 cut(s)	389, 791
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	2 cut(s)	653, 793
BstKTI	GATC	3 cut(s)	398, 529, 687
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	3 cut(s)	395, 526, 684
BstMCI	CGRYCG	1 cut(s)	610
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 539, 921
BstSCI	CCNGG	3 cut(s)	622, 764, 765
BstUI	CGCG	2 cut(s)	389, 791
BstV1I	GCAGC	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	156, 514, 939
BtsCI	GGATG	3 cut(s)	22, 120, 460
BtsIMutI	CAGTG	3 cut(s)	370, 439, 573
CfoI	GCGC	2 cut(s)	653, 793
Cfr10I	RCCGGY	1 cut(s)	609
Cfr13I	GGNCC	3 cut(s)	513, 711, 937
Cfr9I	CCCGGG	1 cut(s)	765
CpoI	CGGWCCG	1 cut(s)	711
CseI	GACGC	3 cut(s)	395, 847, 855
Csp6I	GTAC	5 cut(s)	361, 370, 538, 842, 948
CspAI	ACCGGT	1 cut(s)	609
CspI	CGGWCCG	1 cut(s)	711
CviAII	CATG	5 cut(s)	81, 378, 637, 806, 904
CviQI	GTAC	5 cut(s)	361, 370, 538, 842, 948
DdeI	CTNAG	1 cut(s)	450
DinI	GGCGCC	1 cut(s)	652
DpnI	GATC	3 cut(s)	397, 528, 686
DpnII	GATC	3 cut(s)	395, 526, 684
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	601, 932
Eco47I	GGWCC	1 cut(s)	711
Eco88I	CYCGRG	2 cut(s)	765, 830
EcoT14I	CCWWGG	2 cut(s)	601, 932
EgeI	GGCGCC	1 cut(s)	652
EheI	GGCGCC	1 cut(s)	652
ErhI	CCWWGG	2 cut(s)	601, 932
FaeI	CATG	5 cut(s)	84, 381, 640, 809, 907
FaiI	YATR	8 cut(s)	82, 379, 427, 596, 598, 638, 807, 905
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 865, 897
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	5 cut(s)	80, 377, 636, 805, 903
FauI	CCCGC	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	684
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	3 cut(s)	9, 107, 467
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	3 cut(s)	272, 741, 891
GlaI	GCGC	2 cut(s)	652, 792
GluI	GCNGC	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	3 cut(s)	156, 514, 939
HapII	CCGG	5 cut(s)	479, 496, 610, 624, 766
HgaI	GACGC	3 cut(s)	395, 847, 855
HhaI	GCGC	2 cut(s)	653, 793
Hin1I	GRCGYC	3 cut(s)	354, 651, 858
Hin1II	CATG	5 cut(s)	84, 381, 640, 809, 907
Hin6I	GCGC	2 cut(s)	651, 791
HinP1I	GCGC	2 cut(s)	651, 791
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HpaII	CCGG	5 cut(s)	479, 496, 610, 624, 766
HphI	GGTGA	1 cut(s)	946
Hpy166II	GTNNAC	2 cut(s)	372, 564
Hpy188I	TCNGA	4 cut(s)	13, 645, 711, 977
Hpy188III	TCNNGA	4 cut(s)	409, 452, 830, 891
Hpy8I	GTNNAC	2 cut(s)	372, 564
Hpy99I	CGWCG	2 cut(s)	356, 871
HpyAV	CCTTC	3 cut(s)	568, 897, 967
HpyCH4III	ACNGT	4 cut(s)	365, 443, 568, 947
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	135, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 539, 921
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	3 cut(s)	354, 651, 858
Hsp92II	CATG	5 cut(s)	84, 381, 640, 809, 907
HspAI	GCGC	2 cut(s)	651, 791
KasI	GGCGCC	1 cut(s)	650
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	3 cut(s)	395, 526, 684
LmnI	GCTCC	1 cut(s)	749
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	2 cut(s)	144, 646
MaeI	CTAG	3 cut(s)	272, 741, 891
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	3 cut(s)	397, 528, 686
MbiI	CCGCTC	1 cut(s)	848
MboI	GATC	3 cut(s)	395, 526, 684
MboII	GAAGA	3 cut(s)	26, 118, 130
MflI	RGATCY	1 cut(s)	526
MluCI	AATT	4 cut(s)	404, 586, 821, 983
Mly113I	GGCGCC	1 cut(s)	651
MseI	TTAA	1 cut(s)	615
MspI	CCGG	5 cut(s)	479, 496, 610, 624, 766
MspR9I	CCNGG	3 cut(s)	624, 766, 767
MvnI	CGCG	2 cut(s)	389, 791
MwoI	GCNNNNNNNGC	3 cut(s)	101, 539, 921
NarI	GGCGCC	1 cut(s)	651
NciI	CCSGG	3 cut(s)	624, 766, 767
NdeII	GATC	3 cut(s)	395, 526, 684
NlaIII	CATG	5 cut(s)	84, 381, 640, 809, 907
NlaIV	GGNNCC	4 cut(s)	483, 634, 652, 938
PaeR7I	CTCGAG	1 cut(s)	830
PinAI	ACCGGT	1 cut(s)	609
PkrI	GCNGC	1 cut(s)	173
PluTI	GGCGCC	1 cut(s)	654
PspN4I	GGNNCC	4 cut(s)	483, 634, 652, 938
PspPI	GGNCC	3 cut(s)	513, 711, 937
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	5 cut(s)	362, 371, 539, 843, 949
RsaNI	GTAC	5 cut(s)	361, 370, 538, 842, 948
Rsr2I	CGGWCCG	1 cut(s)	711
RsrII	CGGWCCG	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	3 cut(s)	395, 526, 684
Sau96I	GGNCC	3 cut(s)	513, 711, 937
ScrFI	CCNGG	3 cut(s)	624, 766, 767
SfaNI	GCATC	2 cut(s)	144, 646
SfoI	GGCGCC	1 cut(s)	652
Sfr274I	CTCGAG	1 cut(s)	830
SinI	GGWCC	1 cut(s)	711
SlaI	CTCGAG	1 cut(s)	830
SmaI	CCCGGG	1 cut(s)	767
SmlI	CTYRAG	3 cut(s)	464, 692, 830
SmoI	CTYRAG	3 cut(s)	464, 692, 830
Sse9I	AATT	4 cut(s)	404, 586, 821, 983
SsiI	CCGC	8 cut(s)	31, 177, 207, 551, 578, 627, 714, 846
SspDI	GGCGCC	1 cut(s)	650
SspI	AATATT	1 cut(s)	965
SspMI	CTAG	3 cut(s)	272, 741, 891
StyD4I	CCNGG	3 cut(s)	622, 764, 765
StyI	CCWWGG	2 cut(s)	601, 932
TaaI	ACNGT	4 cut(s)	365, 443, 568, 947
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	4 cut(s)	41, 408, 831, 869
TasI	AATT	4 cut(s)	404, 586, 821, 983
TatI	WGTACW	2 cut(s)	360, 369
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	3 cut(s)	370, 446, 573
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	822
TspGWI	ACGGA	1 cut(s)	213
TspMI	CCCGGG	1 cut(s)	765
TspRI	CASTG	3 cut(s)	370, 446, 573
VpaK11BI	GGWCC	1 cut(s)	711
XapI	RAATTY	2 cut(s)	404, 983
XbaI	TCTAGA	1 cut(s)	890
XhoI	CTCGAG	1 cut(s)	830
XmaI	CCCGGG	1 cut(s)	765
XspI	CTAG	3 cut(s)	272, 741, 891
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.