Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016225

Physical Location & Seq

Genomic Coordinates Reverse (-)

28533659 .. 28535374

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G292200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGCTCCAATTCTTCATCACCTACAAGAATCTTTTACTTCAACTCTCACTCTCTCTCACACTCACACTCCTCCTTACCTTCCTCAAAATCCCCATCTTCTTCCTCCGTGGCCTACACACCTACATCCACCCTGACAACGTCCAAAGTGGAGTCCGTGCCGCCATTCGGAGGCCCGATGCCTCCGATTCGGCTTCTGGGTTACCTTCAAAATCCAATTCCGAGCTCAGGAAGAGGTCCAAGTCAAAGGACAAGCCCGAGTTCGATGAAAACAATGCTCAGATCTTTCGCCTAAAGCTTGACGAGGCCCATCTTCAAACCAGGCTCTATTTCAATGAGTATTGCAATGCTTTCACCTTCTCATTTGTAGCTCTATCTTGTCTTTTGCTTCAGTTATTGTACTTGAAAAGCGAATCAAACAATTCTGAGTTTTTGGTTAATGGGATTTTTGTTCCGGTTCTGTTAGGCTTTGCGGGTGTTTCTAAGTTGTTAATGTTGCTTGGCAAAGTTTCGTATGAGAAATCTGCGTCGCGGCGGTCAGAGAAGCAACTGAGTGTGCTTTGTGGCGTTGTGGGGTTGGTTTTAGGATATATGGTTTGCTTCACATTTAGTCCTTCGGTTTTAGATTTCAATTTTGACTCAATTGATGGGTCGGGGAGGATCTTTGTTGCTGTTTTAATGGGATGCTTTTCCGGTTTCTTGTTTATGCCTGCGGTGAAGAGTGCGAGGTGCTTTTGGCTTGGAACTGATCAGATTAGGTCTGATTTGGTAATGCTATCATGTGATTGGTTTGGTAGAATGGTTCTGTATGCAAATTATATGATGATTGTATTCACAGTTCTTTTGTGGATTAATCCCTTAGCTGGAATGCTCGTGAACAAGAACATAAATGGAAAAGTTGCAAATGCTGAGATGTTGATTGGCAATGTCGGATTTTCGCCTTCAGATTTTGCTAAATTTAGGCTTTGCTGCTTACTGCTTTCGAGTTTTCTGCAAATTGTTGCTCTGCGCCCCAACATACAAATGTATTTGAATGAGGCACTGTTATCTTGGTACCAAAGATTGCATGCTAGCAGGGTTCCAGACTTGGATTTCAGTAGGGCTAAGGTGTTTTTGCACAATCACTACTTATGCCTTGTAGTTGTGCAGTTTCTTGCACCACCAATTGTGTTACTTCTTTTTCTTGGACTATCTCAGATTGATGGTATCTCTTCGGAAAATTACAAATACATTTGTAGTCTAGCGCCTTGCTCTGCCTTTGTGAAAGAAGTGGCTCTCTTTATGGCTTGGTGGGTTATGTTTGTTTGGGCGATTTATAGTTCAGCAACCATTCTTCTATATCGTCGCTGCGTTTTGTATATGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_161AB

Protein Analysis

455

Amino Acids

51.41

Weight (kDa)

9.07

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52180
fragaria_vesca	FvH4_7g29210
malus_domestica	MD01G1198800.v1.1 MD07G1266600.v1.1
prunus_persica	Prupe.2G292200_v2.0.a1
pyrus_communis	pycom07g24440
rosa_chinensis	RchiOBHm_Chr1g0376971
rosa_laevigata	RLG00000026555
rosa_roxburghii	Rroxscaffold_4G00281600
rosa_rugosa	Rorug01G0400000
rosa_samantha	Rh1AG417200 Rh1BG376600 Rh1CG390400 Rh1DG407300
rosa_wichuraiana	Rw1G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1050
AccB1I	GGYRCC	1 cut(s)	1050
AccII	CGCG	1 cut(s)	529
AciI	CCGC	5 cut(s)	159, 470, 529, 532, 710
AclWI	GGATC	1 cut(s)	665
AcsI	RAATTY	1 cut(s)	953
AcuI	CTGAAG	2 cut(s)	371, 924
AfaI	GTAC	2 cut(s)	398, 1052
AfiI	CCNNNNNNNGG	4 cut(s)	165, 168, 225, 860
AgsI	TTSAA	7 cut(s)	41, 207, 314, 331, 403, 628, 1030
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	223, 295, 368, 860
AluI	AGCT	4 cut(s)	223, 295, 368, 860
Alw21I	GWGCWC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	3 cut(s)	109, 170, 303
ApeKI	GCWGC	2 cut(s)	966, 1344
ApoI	RAATTY	1 cut(s)	953
AseI	ATTAAT	1 cut(s)	849
Asp718I	GGTACC	1 cut(s)	1050
AspLEI	GCGC	2 cut(s)	1008, 1243
AspS9I	GGNCC	3 cut(s)	171, 234, 304
AsuHPI	GGTGA	3 cut(s)	10, 343, 724
AsuNHI	GCTAGC	1 cut(s)	1067
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	1050
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	869
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	953, 1331
BccI	CCATC	4 cut(s)	101, 315, 638, 1193
BcgI	CGANNNNNNTGC	2 cut(s)	970, 1004
BciT130I	CCWGG	1 cut(s)	319
BclI	TGATCA	1 cut(s)	745
BfaI	CTAG	2 cut(s)	1068, 1238
BfoI	RGCGCY	1 cut(s)	1244
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	4 cut(s)	159, 530, 967, 1345
BlsI	GCNGC	4 cut(s)	160, 531, 968, 1346
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	3 cut(s)	171, 234, 304
BmiI	GGNNCC	2 cut(s)	1052, 1077
BmrFI	CCNGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	166, 671
BmtI	GCTAGC	1 cut(s)	1071
Bpu10I	CCTNAGC	3 cut(s)	224, 856, 1101
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	2 cut(s)	451, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	4 cut(s)	165, 168, 225, 860
Bse3DI	GCAATG	2 cut(s)	349, 928
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	123, 686
BseLI	CCNNNNNNNGG	4 cut(s)	165, 168, 225, 860
BseMI	GCAATG	2 cut(s)	349, 928
BseMII	CTCAG	6 cut(s)	238, 290, 414, 539, 897, 1205
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	953, 1331
BsgI	GTGCAG	1 cut(s)	1163
Bsh1236I	CGCG	1 cut(s)	529
BshFI	GGCC	3 cut(s)	111, 172, 305
BshNI	GGYRCC	1 cut(s)	1050
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	452, 690
BslI	CCNNNNNNNGG	4 cut(s)	165, 168, 225, 860
BsmI	GAATGC	1 cut(s)	870
BsnI	GGCC	3 cut(s)	111, 172, 305
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	279, 657, 745
BspACI	CCGC	5 cut(s)	159, 470, 529, 532, 710
BspANI	GGCC	3 cut(s)	111, 172, 305
BspCNI	CTCAG	6 cut(s)	237, 289, 415, 540, 898, 1204
BspFNI	CGCG	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	1052, 1077
BspOI	GCTAGC	1 cut(s)	1071
BspPI	GGATC	1 cut(s)	665
BspT107I	GGYRCC	1 cut(s)	1050
BsrDI	GCAATG	2 cut(s)	349, 928
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	3 cut(s)	279, 657, 745
BssSI	CACGAG	1 cut(s)	869
Bst2BI	CACGAG	1 cut(s)	869
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	2 cut(s)	835, 1041
Bst6I	CTCTTC	3 cut(s)	224, 710, 1213
BstC8I	GCNNGC	3 cut(s)	708, 1065, 1069
BstDEI	CTNAG	9 cut(s)	224, 276, 423, 480, 548, 856, 906, 1101, 1191
BstDSI	CCRYGG	1 cut(s)	106
BstEII	GGTNACC	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	123, 686
BstFNI	CGCG	1 cut(s)	529
BstH2I	RGCGCY	1 cut(s)	1244
BstHHI	GCGC	2 cut(s)	1008, 1243
BstKTI	GATC	3 cut(s)	282, 660, 748
BstMBI	GATC	3 cut(s)	279, 657, 745
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	1067
BstPI	GGTNACC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	317
BstUI	CGCG	1 cut(s)	529
BstV1I	GCAGC	2 cut(s)	953, 1331
BstX2I	RGATCY	2 cut(s)	279, 657
BstYI	RGATCY	2 cut(s)	279, 657
BsuRI	GGCC	3 cut(s)	111, 172, 305
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	123, 686
BtsIMutI	CAGTG	1 cut(s)	1037
Cac8I	GCNNGC	3 cut(s)	708, 1065, 1069
CfoI	GCGC	2 cut(s)	1008, 1243
Cfr13I	GGNCC	3 cut(s)	171, 234, 304
CseI	GACGC	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	397, 1051
CviAII	CATG	2 cut(s)	777, 1064
CviQI	GTAC	2 cut(s)	397, 1051
DdeI	CTNAG	9 cut(s)	224, 276, 423, 480, 548, 856, 906, 1101, 1191
DpnI	GATC	3 cut(s)	281, 659, 747
DpnII	GATC	3 cut(s)	279, 657, 745
Eam1104I	CTCTTC	3 cut(s)	224, 710, 1213
EarI	CTCTTC	3 cut(s)	224, 710, 1213
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	371, 924
Eco88I	CYCGRG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	2 cut(s)	780, 1067
FatI	CATG	2 cut(s)	776, 1063
FauI	CCCGC	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	4 cut(s)	159, 530, 967, 1345
FokI	GGATG	2 cut(s)	110, 693
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	159, 530, 967, 1345
FspBI	CTAG	2 cut(s)	1068, 1238
GlaI	GCGC	2 cut(s)	1007, 1242
GluI	GCNGC	4 cut(s)	159, 530, 967, 1345
HaeII	RGCGCY	1 cut(s)	1244
HaeIII	GGCC	3 cut(s)	111, 172, 305
HapII	CCGG	2 cut(s)	452, 690
HgaI	GACGC	1 cut(s)	513
HhaI	GCGC	2 cut(s)	1008, 1243
Hin1II	CATG	2 cut(s)	780, 1067
Hin6I	GCGC	2 cut(s)	1006, 1241
HinP1I	GCGC	2 cut(s)	1006, 1241
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	5 cut(s)	28, 150, 185, 410, 635
HpaII	CCGG	2 cut(s)	452, 690
HphI	GGTGA	3 cut(s)	10, 343, 724
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188III	TCNNGA	4 cut(s)	226, 871, 1079, 1362
Hpy8I	GTNNAC	1 cut(s)	874
Hpy99I	CGWCG	2 cut(s)	529, 1344
HpyAV	CCTTC	5 cut(s)	88, 213, 364, 621, 948
HpyCH4III	ACNGT	2 cut(s)	835, 1041
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	8 cut(s)	342, 809, 899, 991, 1063, 1114, 1144, 1154
HpyF3I	CTNAG	9 cut(s)	224, 276, 423, 480, 548, 856, 906, 1101, 1191
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	780, 1067
HspAI	GCGC	2 cut(s)	1006, 1241
KpnI	GGTACC	1 cut(s)	1054
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	3 cut(s)	279, 657, 745
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	2 cut(s)	953, 1331
LweI	GCATC	2 cut(s)	166, 671
MaeI	CTAG	2 cut(s)	1068, 1238
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	198, 1167
MalI	GATC	3 cut(s)	281, 659, 747
MboI	GATC	3 cut(s)	279, 657, 745
MboII	GAAGA	8 cut(s)	4, 88, 91, 241, 302, 727, 1200, 1322
MfeI	CAATTG	2 cut(s)	639, 1161
MflI	RGATCY	2 cut(s)	279, 657
MhlI	GDGCHC	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	159, 629
MmeI	TCCRAC	1 cut(s)	907
MseI	TTAA	4 cut(s)	435, 488, 674, 849
MslI	CAYNNNNRTG	1 cut(s)	1019
MspI	CCGG	2 cut(s)	452, 690
MspR9I	CCNGG	1 cut(s)	319
MunI	CAATTG	2 cut(s)	639, 1161
Mva1269I	GAATGC	1 cut(s)	870
MvaI	CCWGG	1 cut(s)	319
MvnI	CGCG	1 cut(s)	529
NdeII	GATC	3 cut(s)	279, 657, 745
NheI	GCTAGC	1 cut(s)	1067
NlaIII	CATG	2 cut(s)	780, 1067
NlaIV	GGNNCC	2 cut(s)	1052, 1077
NspI	RCATGY	1 cut(s)	1067
PaeI	GCATGC	1 cut(s)	1067
PctI	GAATGC	1 cut(s)	870
PfeI	GAWTC	3 cut(s)	28, 185, 410
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	160, 531, 968, 1346
PleI	GAGTC	2 cut(s)	158, 629
PpsI	GAGTC	2 cut(s)	158, 629
PshBI	ATTAAT	1 cut(s)	849
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	317
PspEI	GGTNACC	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	1052, 1077
PspPI	GGNCC	3 cut(s)	171, 234, 304
PsrI	GAACNNNNNNTAC	2 cut(s)	819, 851
PsuI	RGATCY	2 cut(s)	279, 657
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	2 cut(s)	398, 1052
RsaNI	GTAC	2 cut(s)	397, 1051
RseI	CAYNNNNRTG	1 cut(s)	1019
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	4 cut(s)	435, 488, 674, 849
SatI	GCNGC	4 cut(s)	159, 530, 967, 1345
Sau3AI	GATC	3 cut(s)	279, 657, 745
Sau96I	GGNCC	3 cut(s)	171, 234, 304
SchI	GAGTC	2 cut(s)	159, 629
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	2 cut(s)	166, 671
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	1019
SphI	GCATGC	1 cut(s)	1067
SsiI	CCGC	5 cut(s)	159, 470, 529, 532, 710
SspMI	CTAG	2 cut(s)	1068, 1238
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	835, 1041
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	261, 980
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	2 cut(s)	161, 532
TfiI	GAWTC	3 cut(s)	28, 185, 410
Tru1I	TTAA	4 cut(s)	435, 488, 674, 849
Tru9I	TTAA	4 cut(s)	435, 488, 674, 849
TscAI	CASTG	1 cut(s)	1044
TseI	GCWGC	2 cut(s)	966, 1344
TspDTI	ATGAA	2 cut(s)	4, 279
TspGWI	ACGGA	2 cut(s)	95, 143
TspRI	CASTG	1 cut(s)	1044
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	234
VspI	ATTAAT	1 cut(s)	849
XapI	RAATTY	1 cut(s)	953
XceI	RCATGY	1 cut(s)	1067
XspI	CTAG	2 cut(s)	1068, 1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.