Prupe.2G305200_v2.0.a1

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0019771
Physical Location & Seq
Reverse (-)
29106161 .. 29107545
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G305200.1

Sequence Viewer

Length: 894 bp
ATGGCACTAAGCAAAACACAAGCCTCAGCCCTATCTTTGTCCCTCTTGATCATCATTTCTTTATGCAAGTCGTCCCAAGCTGGTGGGATTGCCATCTATTGGGGCCAAGGCAGCCCCAGCAATGAAGGCTCCTTGGCAGATACTTGTAACACAGGCAACTACCAATTTGTGAACATTGCTTTCCTATCAACTTTTGGCAACGGCCAAACCCCAGTGCTAAACCTGGCTGCGCACTGTGACCCAAGTACCAATGGCTGCACCAGTTTGAGCACCGACATCAAAGCTTGCCAAGCCAAGAACATCAAAGTCCTCCTCTCGATTGGAGGCGGTGCAGGAAGCTACTCTCTCACTTCAGCTGATGATGCAAGGCAAGTTGCTGATTACCTTTGGAATAACTTCCTAGGCGGTCAGGCCAATTCACGCCCCCTTGGTGACGCAGTTTTGGATGGCATTGATTTTGACATTGAAGCTGGTGGTGGCCAGTTCTGGGATGAGCTTGCCAGGTCACTCAGTGGGCGCGGCAGTAAGGTCTACTTAGCTGCAGCTCCACAATGTCCATTCCCAGATGCTCACCTAGACGGTGCTATCAAAACCGGCCTATTTGACTATGTCTGGGTTCAATTCTACAACAACCCTCCATGCCAATTTGCAAACAACAATGCTGCCAACCTTTTAAGTGCATGGAACCAATGGACGTCGACTGAAGCCAAACAAGTGTTCTTGGGACTACCGGCAGCTCCTGAAGCTGCTCCGAGTGGTGGATTTATTCCTGCTGATGCTCTCAAGTCACAGGTTCTTCCAAATATTAAGAGTTCTCCAAAGTATGGAGGAGTTATGCTTTGGAGCAAACAGTATGACAATGGTTACAGCACTTCCATTAAAGACAGCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005615 GO:0044421
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

298

Amino Acids

31.24

Weight (kDa)

4.94

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019771)

Species Orthologous Gene IDs
malus_domestica MD01G1212900.v1.1 MD01G1213100.v1.1 MD01G1213300.v1.1 MD07G1282900.v1.1
prunus_persica Prupe.2G305200_v2.0.a1
pyrus_communis pycom01g22400 pycom01g22420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 698
Acc16I TGCGCA 1 cut(s) 231
AccB7I CCANNNNNTGG 2 cut(s) 99, 824
AccI GTMKAC 2 cut(s) 531, 698
AccII CGCG 1 cut(s) 519
AciI CCGC 3 cut(s) 327, 405, 519
AcoI YGGCCR 2 cut(s) 202, 478
AcuI CTGAAG 3 cut(s) 336, 723, 762
AcyI GRCGYC 1 cut(s) 695
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 4 cut(s) 99, 487, 758, 824
AgsI TTSAA 2 cut(s) 467, 620
AjnI CCWGG 2 cut(s) 222, 500
AjuI GAANNNNNNNTTGG 2 cut(s) 701, 733
Alw21I GWGCWC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 740
AoxI GGCC 5 cut(s) 103, 202, 411, 478, 595
ApeKI GCWGC 8 cut(s) 111, 227, 255, 539, 542, 662, 734, 746
Asp700I GAANNNNTTC 1 cut(s) 395
AspA2I CCTAGG 1 cut(s) 400
AspLEI GCGC 2 cut(s) 232, 519
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 443, 563
AvrII CCTAGG 1 cut(s) 400
BaeI ACNNNNGTAYC 2 cut(s) 229, 262
BalI TGGCCA 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 272
BbvCI CCTCAGC 1 cut(s) 25
BbvI GCAGC 8 cut(s) 123, 214, 242, 526, 554, 649, 733, 746
BccI CCATC 2 cut(s) 101, 440
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 2 cut(s) 224, 502
BclI TGATCA 1 cut(s) 48
BfaI CTAG 3 cut(s) 401, 575, 892
BfmI CTRYAG 1 cut(s) 540
BisI GCNGC 9 cut(s) 112, 228, 256, 520, 540, 543, 663, 735, 747
BlnI CCTAGG 1 cut(s) 400
BlsI GCNGC 9 cut(s) 113, 229, 257, 521, 541, 544, 664, 736, 748
Bme1390I CCNGG 2 cut(s) 224, 502
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 3 cut(s) 104, 130, 686
BmrFI CCNGG 2 cut(s) 224, 502
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 3 cut(s) 352, 556, 766
BmuI ACTGGG 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 695
BsaJI CCNNGG 4 cut(s) 106, 132, 400, 427
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 487, 758, 824
Bse118I RCCGGY 2 cut(s) 593, 730
Bse1I ACTGG 3 cut(s) 212, 261, 481
Bse3DI GCAATG 2 cut(s) 127, 174
Bse8I GATNNNNATC 1 cut(s) 92
BseBI CCWGG 2 cut(s) 224, 502
BseDI CCNNGG 4 cut(s) 106, 132, 400, 427
BseGI GGATG 2 cut(s) 451, 496
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 4 cut(s) 99, 487, 758, 824
BseMI GCAATG 2 cut(s) 127, 174
BseMII CTCAG 2 cut(s) 39, 523
BseNI ACTGG 3 cut(s) 212, 261, 481
BseRI GAGGAG 2 cut(s) 302, 843
BseXI GCAGC 8 cut(s) 123, 214, 242, 526, 554, 649, 733, 746
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 2 cut(s) 241, 351
Bsh1236I CGCG 1 cut(s) 519
BshFI GGCC 5 cut(s) 105, 204, 413, 480, 597
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 2 cut(s) 594, 731
BslFI GGGAC 3 cut(s) 25, 58, 738
BslI CCNNNNNNNGG 4 cut(s) 99, 487, 758, 824
BsmFI GGGAC 3 cut(s) 25, 58, 738
BsnI GGCC 5 cut(s) 105, 204, 413, 480, 597
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 3 cut(s) 327, 405, 519
BspANI GGCC 5 cut(s) 105, 204, 413, 480, 597
BspCNI CTCAG 2 cut(s) 38, 522
BspFNI CGCG 1 cut(s) 519
BspLI GGNNCC 3 cut(s) 104, 130, 686
BspMAI CTGCAG 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 127, 174
BsrFI RCCGGY 2 cut(s) 593, 730
BsrI ACTGG 3 cut(s) 212, 261, 481
BssAI RCCGGY 2 cut(s) 593, 730
BssECI CCNNGG 4 cut(s) 106, 132, 400, 427
BssMI GATC 1 cut(s) 48
BssNI GRCGYC 1 cut(s) 695
BssT1I CCWWGG 4 cut(s) 106, 132, 400, 427
Bst2UI CCWGG 2 cut(s) 224, 502
Bst4CI ACNGT 3 cut(s) 236, 581, 852
BstACI GRCGYC 1 cut(s) 695
BstC8I GCNNGC 2 cut(s) 286, 498
BstDEI CTNAG 4 cut(s) 8, 25, 509, 535
BstF5I GGATG 2 cut(s) 451, 496
BstFNI CGCG 1 cut(s) 519
BstHHI GCGC 2 cut(s) 232, 519
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 6 cut(s) 111, 117, 126, 290, 362, 743
BstNI CCWGG 2 cut(s) 224, 502
BstSCI CCNGG 2 cut(s) 222, 500
BstSFI CTRYAG 1 cut(s) 540
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 8 cut(s) 123, 214, 242, 526, 554, 649, 733, 746
BstXI CCANNNNNNTGG 1 cut(s) 83
BsuRI GGCC 5 cut(s) 105, 204, 413, 480, 597
BtsCI GGATG 2 cut(s) 451, 496
BtsIMutI CAGTG 3 cut(s) 219, 232, 517
Cac8I GCNNGC 2 cut(s) 286, 498
CaiI CAGNNNCTG 1 cut(s) 740
CfoI GCGC 2 cut(s) 232, 519
Cfr10I RCCGGY 2 cut(s) 593, 730
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 2 cut(s) 443, 877
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 639, 681
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 4 cut(s) 8, 25, 509, 535
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
DraIII CACNNNGTG 1 cut(s) 512
EaeI YGGCCR 2 cut(s) 202, 478
Eco130I CCWWGG 4 cut(s) 106, 132, 400, 427
Eco57I CTGAAG 3 cut(s) 336, 723, 762
EcoRII CCWGG 2 cut(s) 222, 500
EcoT14I CCWWGG 4 cut(s) 106, 132, 400, 427
ErhI CCWWGG 4 cut(s) 106, 132, 400, 427
FaeI CATG 2 cut(s) 642, 684
FaiI YATR 7 cut(s) 64, 609, 640, 682, 825, 836, 855
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 3 cut(s) 25, 58, 738
FatI CATG 2 cut(s) 638, 680
FbaI TGATCA 1 cut(s) 48
FblI GTMKAC 2 cut(s) 531, 698
Fnu4HI GCNGC 9 cut(s) 112, 228, 256, 520, 540, 543, 663, 735, 747
FokI GGATG 2 cut(s) 458, 503
Fsp4HI GCNGC 9 cut(s) 112, 228, 256, 520, 540, 543, 663, 735, 747
FspBI CTAG 3 cut(s) 401, 575, 892
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 2 cut(s) 231, 518
GluI GCNGC 9 cut(s) 112, 228, 256, 520, 540, 543, 663, 735, 747
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 5 cut(s) 105, 204, 413, 480, 597
HapII CCGG 2 cut(s) 594, 731
HgaI GACGC 2 cut(s) 443, 877
HhaI GCGC 2 cut(s) 232, 519
Hin1I GRCGYC 1 cut(s) 695
Hin1II CATG 2 cut(s) 642, 684
Hin6I GCGC 2 cut(s) 230, 517
HinP1I GCGC 2 cut(s) 230, 517
HincII GTYRAC 1 cut(s) 699
HindII GTYRAC 1 cut(s) 699
HindIII AAGCTT 1 cut(s) 282
HpaII CCGG 2 cut(s) 594, 731
HphI GGTGA 2 cut(s) 443, 563
Hpy166II GTNNAC 3 cut(s) 172, 532, 699
Hpy188I TCNGA 1 cut(s) 753
Hpy188III TCNNGA 3 cut(s) 46, 316, 740
Hpy8I GTNNAC 3 cut(s) 172, 532, 699
Hpy99I CGWCG 1 cut(s) 700
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 3 cut(s) 236, 581, 852
HpyCH4IV ACGT 1 cut(s) 695
HpyCH4V TGCA 7 cut(s) 66, 258, 332, 365, 542, 650, 680
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 117, 126, 290, 362, 743
HpyF3I CTNAG 4 cut(s) 8, 25, 509, 535
HpySE526I ACGT 1 cut(s) 695
Hsp92I GRCGYC 1 cut(s) 695
Hsp92II CATG 2 cut(s) 642, 684
HspAI GCGC 2 cut(s) 230, 517
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 5 cut(s) 134, 550, 742, 754, 843
Lsp1109I GCAGC 8 cut(s) 123, 214, 242, 526, 554, 649, 733, 746
LweI GCATC 3 cut(s) 352, 556, 766
MaeI CTAG 3 cut(s) 401, 575, 892
MaeII ACGT 1 cut(s) 695
MaeIII GTNAC 6 cut(s) 146, 236, 431, 504, 786, 863
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 1 cut(s) 788
MhlI GDGCHC 1 cut(s) 272
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 4 cut(s) 164, 415, 620, 644
MluNI TGGCCA 1 cut(s) 480
MnlI CCTC 7 cut(s) 34, 53, 317, 320, 323, 645, 821
Mox20I TGGCCA 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 480
MseI TTAA 3 cut(s) 674, 807, 879
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 2 cut(s) 594, 731
MspR9I CCNGG 2 cut(s) 224, 502
MvaI CCWGG 2 cut(s) 224, 502
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 6 cut(s) 111, 117, 126, 290, 362, 743
NdeII GATC 1 cut(s) 48
NlaIII CATG 2 cut(s) 642, 684
NlaIV GGNNCC 3 cut(s) 104, 130, 686
NmuCI GTSAC 4 cut(s) 236, 431, 504, 786
NsbI TGCGCA 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 395
PflFI GACNNNGTC 2 cut(s) 608, 887
PflMI CCANNNNNTGG 2 cut(s) 99, 824
PkrI GCNGC 9 cut(s) 113, 229, 257, 521, 541, 544, 664, 736, 748
Psp6I CCWGG 2 cut(s) 222, 500
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 2 cut(s) 222, 500
PspN4I GGNNCC 3 cut(s) 104, 130, 686
PspPI GGNCC 1 cut(s) 103
PstI CTGCAG 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 740
PsyI GACNNNGTC 2 cut(s) 608, 887
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SalI GTCGAC 1 cut(s) 697
SaqAI TTAA 3 cut(s) 674, 807, 879
SatI GCNGC 9 cut(s) 112, 228, 256, 520, 540, 543, 663, 735, 747
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 224, 502
SduI GDGCHC 1 cut(s) 272
SfaNI GCATC 3 cut(s) 352, 556, 766
SfcI CTRYAG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 4 cut(s) 164, 415, 620, 644
SsiI CCGC 3 cut(s) 327, 405, 519
SspI AATATT 1 cut(s) 805
SspMI CTAG 3 cut(s) 401, 575, 892
StyD4I CCNGG 2 cut(s) 222, 500
StyI CCWWGG 4 cut(s) 106, 132, 400, 427
TaaI ACNGT 3 cut(s) 236, 581, 852
TaiI ACGT 1 cut(s) 698
TaqI TCGA 2 cut(s) 317, 698
TasI AATT 4 cut(s) 164, 415, 620, 644
TauI GCSGC 1 cut(s) 522
Tru1I TTAA 3 cut(s) 674, 807, 879
Tru9I TTAA 3 cut(s) 674, 807, 879
TscAI CASTG 3 cut(s) 219, 239, 517
TseFI GTSAC 4 cut(s) 236, 431, 504, 786
TseI GCWGC 8 cut(s) 111, 227, 255, 539, 542, 662, 734, 746
Tsp45I GTSAC 4 cut(s) 236, 431, 504, 786
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 3 cut(s) 219, 239, 517
Tth111I GACNNNGTC 2 cut(s) 608, 887
Van91I CCANNNNNTGG 2 cut(s) 99, 824
XmaJI CCTAGG 1 cut(s) 400
XmiI GTMKAC 2 cut(s) 531, 698
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 3 cut(s) 401, 575, 892
ZraI GACGTC 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.