Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011128

Physical Location & Seq

Genomic Coordinates Forward (+)

29542875 .. 29544688

Gene Structure 1814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G313600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTTCTTCCACACTAGGCTTCAGTTTCTCACCTGCTTCCCATAGGGTGCAACTGAGAGTGGAAAGTTCAATGCTTTCCAATTGCTCCTTTAGGCCGCAGGTAATTTCCCGAATGCAAAAAGATGGCAGCGGCCGGCAAGTGTGGCGGCGAAGGAAATTGACAAAGAAGGATGACATGTTGCGATACAAGATGGAGAGAGTACCTTTCCTCGAGGAGCAGGTTCGGAAGGTAAAGGACGGAGGACAGCTCTTGGGAATGGATATTGAGAGACTACTCCTATCAGAGGATAACCGGTTTGATTTTGTCAATGATATAGCGGCCGAGGCTAGCGAGTATGTCGAGAACAACCGAGATGAGTATGGGGGCAAGAAGAAAGCCATCCTTCAAGTGATAAGTAACCGGGTGAATGATGCTGGGTTTTTTAGACCAGAGGCATATGAAGAATCTGACCCCTTCAAGCCAGGCCCTTCTTATTTGAAAGAAGAATTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000427 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0061024 GO:0061695 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

19.1

Weight (kDa)

8.64

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24314 AT5G24314
fragaria_vesca	FvH4_7g32020 FvH4_7g32020
malus_domestica	MD01G1223100.v1.1
prunus_persica	Prupe.2G313600_v2.0.a1 Prupe.2G313600_v2.0.a1
pyrus_communis	pycom01g23240 pycom07g26660
rosa_chinensis	RchiOBHm_Chr1g0381631
rosa_laevigata	RLG00000026219
rosa_multiflora	Rmu_co8401605.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278570
rosa_rugosa	Rorug01G0429800 Rorug06G0289600
rosa_samantha	Rh1AG453100 Rh1BG410100 Rh1CG424700 Rh1DG441900
rosa_wichuraiana	Rw1G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
AbsI	CCTCGAGG	1 cut(s)	212
Acc36I	ACCTGC	3 cut(s)	43, 91, 211
AciI	CCGC	4 cut(s)	98, 132, 148, 320
AcoI	YGGCCR	2 cut(s)	133, 321
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	7
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	177
AgeI	ACCGGT	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	72, 389, 460, 481
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	265
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	4 cut(s)	95, 133, 321, 466
ApeKI	GCWGC	1 cut(s)	129
ApoI	RAATTY	1 cut(s)	488
AsiGI	ACCGGT	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	24, 418
AsuNHI	GCTAGC	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	3 cut(s)	119, 187, 389
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	17, 330
BfuAI	ACCTGC	3 cut(s)	43, 91, 211
BisI	GCNGC	5 cut(s)	98, 130, 133, 149, 321
BlsI	GCNGC	5 cut(s)	99, 131, 134, 150, 322
Bme1390I	CCNGG	2 cut(s)	404, 465
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	467
BmrFI	CCNGG	2 cut(s)	404, 465
BmsI	GCATC	1 cut(s)	403
BmtI	GCTAGC	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpuMI	CCSGG	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	2 cut(s)	135, 294
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	178, 381
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	230
BseX3I	CGGCCG	2 cut(s)	133, 321
BseXI	GCAGC	1 cut(s)	141
BseYI	CCCAGC	1 cut(s)	416
Bsh1285I	CGRYCG	2 cut(s)	136, 324
BshFI	GGCC	4 cut(s)	97, 135, 323, 468
BshTI	ACCGGT	1 cut(s)	294
BsiEI	CGRYCG	2 cut(s)	136, 324
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	136, 295, 403
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	4 cut(s)	97, 135, 323, 468
BsoBI	CYCGRG	1 cut(s)	212
BspACI	CCGC	4 cut(s)	98, 132, 148, 320
BspANI	GGCC	4 cut(s)	97, 135, 323, 468
BspCNI	CTCAG	1 cut(s)	48
BspMI	ACCTGC	3 cut(s)	43, 91, 211
BspOI	GCTAGC	1 cut(s)	333
BsrFI	RCCGGY	2 cut(s)	135, 294
BssAI	RCCGGY	2 cut(s)	135, 294
BssECI	CCNNGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	137, 331
BstDEI	CTNAG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	178, 381
BstMAI	GTCTC	1 cut(s)	265
BstMCI	CGRYCG	2 cut(s)	136, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 326
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	402, 463
BstV1I	GCAGC	1 cut(s)	141
BstZI	CGGCCG	2 cut(s)	133, 321
BsuRI	GGCC	4 cut(s)	97, 135, 323, 468
BtsCI	GGATG	2 cut(s)	178, 381
BveI	ACCTGC	3 cut(s)	43, 91, 211
Cac8I	GCNNGC	2 cut(s)	137, 331
Cfr10I	RCCGGY	2 cut(s)	135, 294
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	203
CspAI	ACCGGT	1 cut(s)	294
CviAII	CATG	1 cut(s)	178
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	56
EaeI	YGGCCR	2 cut(s)	133, 321
EagI	CGGCCG	2 cut(s)	133, 321
EclXI	CGGCCG	2 cut(s)	133, 321
Eco52I	CGGCCG	2 cut(s)	133, 321
Eco57I	CTGAAG	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	463
FaeI	CATG	1 cut(s)	181
FaiI	YATR	7 cut(s)	45, 179, 317, 339, 363, 439, 441
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	1 cut(s)	177
FauNDI	CATATG	1 cut(s)	439
Fnu4HI	GCNGC	5 cut(s)	98, 130, 133, 149, 321
FokI	GGATG	2 cut(s)	185, 368
Fsp4HI	GCNGC	5 cut(s)	98, 130, 133, 149, 321
FspBI	CTAG	2 cut(s)	17, 330
GluI	GCNGC	5 cut(s)	98, 130, 133, 149, 321
GsaI	CCCAGC	1 cut(s)	420
HaeIII	GGCC	4 cut(s)	97, 135, 323, 468
HapII	CCGG	3 cut(s)	136, 295, 403
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	3 cut(s)	136, 295, 403
HphI	GGTGA	2 cut(s)	24, 418
Hpy188I	TCNGA	3 cut(s)	228, 286, 451
Hpy188III	TCNNGA	2 cut(s)	111, 343
HpyAV	CCTTC	6 cut(s)	147, 163, 223, 395, 466, 480
HpyCH4V	TGCA	2 cut(s)	52, 118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 326
HpyF3I	CTNAG	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	92, 217
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	2 cut(s)	17, 330
MaeIII	GTNAC	1 cut(s)	398
MboII	GAAGA	3 cut(s)	385, 455, 497
MfeI	CAATTG	1 cut(s)	82
MluCI	AATT	4 cut(s)	82, 105, 158, 488
MnlI	CCTC	6 cut(s)	208, 221, 236, 280, 319, 427
MroNI	GCCGGC	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	3 cut(s)	136, 295, 403
MspR9I	CCNGG	2 cut(s)	404, 465
MunI	CAATTG	1 cut(s)	82
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	2 cut(s)	145, 326
NaeI	GCCGGC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	404
NdeI	CATATG	1 cut(s)	439
NgoMIV	GCCGGC	1 cut(s)	135
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	349
NspI	RCATGY	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	212
PaqCI	CACCTGC	1 cut(s)	43
PciI	ACATGT	1 cut(s)	177
PctI	GAATGC	1 cut(s)	120
PdiI	GCCGGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	446
PinAI	ACCGGT	1 cut(s)	294
PkrI	GCNGC	5 cut(s)	99, 131, 134, 150, 322
PscI	ACATGT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	463
PspPI	GGNCC	1 cut(s)	467
PspXI	VCTCGAGB	1 cut(s)	212
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SatI	GCNGC	5 cut(s)	98, 130, 133, 149, 321
Sau96I	GGNCC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	404, 465
SetI	ASST	6 cut(s)	37, 105, 208, 225, 234, 252
SfaNI	GCATC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	212
SlaI	CTCGAG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	82, 105, 158, 488
SsiI	CCGC	4 cut(s)	98, 132, 148, 320
SspMI	CTAG	2 cut(s)	17, 330
StyD4I	CCNGG	2 cut(s)	402, 463
TaqI	TCGA	2 cut(s)	213, 342
TasI	AATT	4 cut(s)	82, 105, 158, 488
TauI	GCSGC	4 cut(s)	100, 135, 151, 323
TfiI	GAWTC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	488
XceI	RCATGY	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	212
XspI	CTAG	2 cut(s)	17, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.