Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011128

Physical Location & Seq

Genomic Coordinates Reverse (-)

43996309 .. 43997090

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0289600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTGCAGACTATTCCTGCTCTTCATCTTCATCTTCTTCTTCCTCAAACCTAAGAATCACAGTTGAGAAAAACCCTTCTGAGTCTCGCTTATCTGAATTGGACATCAAGTGCTGGCCCAAGTGGGGTTGTTCTCCTGGGAAGTACCAGCTGAAGTTTGATGCAGAGGAGACGTGTTACTTGCTCAAGGGAAGAGTGAAGGCATACCCGAAAGGGTCATCGGAGTTCGTCGAGTTCGGAGCCGGCGACCTGGTTACGATCCCAAAGGGACTCAGTTGCACTTGGGATGTATCAATTGCTGTTGATAAACACTATAAATTCGAATCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000427 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0061024 GO:0061695 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.13

Weight (kDa)

6.56

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_3	PF05899	32 - 105	3.4e-26	EutQ-like cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24314 AT5G24314
fragaria_vesca	FvH4_7g32020 FvH4_7g32020
malus_domestica	MD01G1223100.v1.1
prunus_persica	Prupe.2G313600_v2.0.a1 Prupe.2G313600_v2.0.a1
pyrus_communis	pycom01g23240 pycom07g26660
rosa_chinensis	RchiOBHm_Chr1g0381631
rosa_laevigata	RLG00000026219
rosa_multiflora	Rmu_co8401605.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278570
rosa_rugosa	Rorug01G0429800 Rorug06G0289600
rosa_samantha	Rh1AG453100 Rh1BG410100 Rh1CG424700 Rh1DG441900
rosa_wichuraiana	Rw1G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	173
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	136, 249
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	90, 164
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	117
AsuII	TTCGAA	1 cut(s)	321
BciT130I	CCWGG	2 cut(s)	138, 251
BcoDI	GTCTC	2 cut(s)	90, 164
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	138, 251
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	138, 251
BmsI	GCATC	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse118I	RCCGGY	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	138, 251
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	2 cut(s)	72, 286
BseRI	GAGGAG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	90, 164
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	118
Bsp119I	TTCGAA	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	2 cut(s)	73, 285
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	138, 251
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	2 cut(s)	28, 187
BstBI	TTCGAA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	116, 244
BstDEI	CTNAG	3 cut(s)	53, 81, 272
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	2 cut(s)	90, 164
BstMBI	GATC	1 cut(s)	258
BstNI	CCWGG	2 cut(s)	138, 251
BstSCI	CCNGG	2 cut(s)	136, 249
BstSFI	CTRYAG	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	118
BtrI	CACGTC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	116, 244
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	117
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	145
CviJI	RGCY	4 cut(s)	5, 118, 151, 242
CviKI_1	RGCY	4 cut(s)	5, 118, 151, 242
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	53, 81, 272
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	28, 187
EarI	CTCTTC	2 cut(s)	28, 187
Eco57I	CTGAAG	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	136, 249
Esp3I	CGTCTC	1 cut(s)	164
FaiI	YATR	3 cut(s)	205, 315, 331
FaqI	GGGAC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	1 cut(s)	243
HinfI	GANTC	4 cut(s)	57, 83, 270, 323
HpaII	CCGG	1 cut(s)	243
Hpy188I	TCNGA	4 cut(s)	82, 97, 223, 239
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	87, 193
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	8, 164, 279
HpyF3I	CTNAG	3 cut(s)	53, 81, 272
HpySE526I	ACGT	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	258
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	8 cut(s)	31, 100, 123, 150, 161, 236, 256, 263
LweI	GCATC	1 cut(s)	151
MabI	ACCWGGT	1 cut(s)	249
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	176, 253
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	6 cut(s)	15, 21, 27, 30, 33, 204
MfeI	CAATTG	1 cut(s)	294
MluCI	AATT	3 cut(s)	98, 294, 317
MlyI	GAGTC	2 cut(s)	92, 264
MnlI	CCTC	2 cut(s)	55, 160
MroNI	GCCGGC	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	138, 251
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	2 cut(s)	138, 251
NaeI	GCCGGC	1 cut(s)	244
NdeII	GATC	1 cut(s)	258
NgoMIV	GCCGGC	1 cut(s)	242
NlaIV	GGNNCC	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	57, 323
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	91, 264
PpsI	GAGTC	2 cut(s)	91, 264
Psp6I	CCWGG	2 cut(s)	136, 249
PspGI	CCWGG	2 cut(s)	136, 249
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	151
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	28
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	2 cut(s)	92, 264
ScrFI	CCNGG	2 cut(s)	138, 251
SetI	ASST	4 cut(s)	54, 153, 176, 252
SexAI	ACCWGGT	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	98, 294, 317
StyD4I	CCNGG	2 cut(s)	136, 249
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	231, 321
TasI	AATT	3 cut(s)	98, 294, 317
TfiI	GAWTC	2 cut(s)	57, 323
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	15, 21
XapI	RAATTY	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.