Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011128

Physical Location & Seq

Genomic Coordinates Forward (+)

67261041 .. 67262755

Gene Structure 1715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG453100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTTCCTCCTTCTCTCTCTCATCTTCTTCCCTTAGGGCCGTGCAACTGAGAGTGGAAAACACAGTGGCTTCTTCCAACTGCTGTTTCAGAACGCAGGTGATTTCAGGGGAGCAAAGGAAAGGGAAAGGTCGGAGCGTCTGGCGTCGAAGGAAACTGACAAAGAAGGATGACATGTTGCGATACAAAATGGAGAGAGTGCCTTTCCTGGAGGAACAGGTTCGGAAGGTAAAGGATGGAGGACAGCTCTTGGGAATGGACATCGAGAGACTACTACTCTCAGAGGACAACCGGTTTGATTTTGTGAATGAAATTGCGGCCGAGGCCAACGAGTATGTTGAGAACAACCGAGATGAGTATGGTGGTAAGAAGAAAGCCATCCTTCAGGTGCTAAGTAACCGTGTGAATGATGCTGGGTTTTATAGACCTGAGGCATATGAAGAATCTGACCCCTTCAAACCAGGGCCGTCGTGGTTGAAAGAATTTTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000427 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0061024 GO:0061695 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.97

Weight (kDa)

9.05

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24314 AT5G24314
fragaria_vesca	FvH4_7g32020 FvH4_7g32020
malus_domestica	MD01G1223100.v1.1
prunus_persica	Prupe.2G313600_v2.0.a1 Prupe.2G313600_v2.0.a1
pyrus_communis	pycom01g23240 pycom07g26660
rosa_chinensis	RchiOBHm_Chr1g0381631
rosa_laevigata	RLG00000026219
rosa_multiflora	Rmu_co8401605.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278570
rosa_rugosa	Rorug01G0429800 Rorug06G0289600
rosa_samantha	Rh1AG453100 Rh1BG410100 Rh1CG424700 Rh1DG441900
rosa_wichuraiana	Rw1G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc36I	ACCTGC	1 cut(s)	88
AciI	CCGC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	174
AgeI	ACCGGT	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	457, 478
AjnI	CCWGG	2 cut(s)	207, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	262
AoxI	GGCC	4 cut(s)	39, 318, 324, 464
ApoI	RAATTY	1 cut(s)	482
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AsiGI	ACCGGT	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	39, 464
AsuHPI	GGTGA	1 cut(s)	112
AxyI	CCTNAGG	2 cut(s)	35, 429
BccI	CCATC	2 cut(s)	230, 386
BceAI	ACGGC	2 cut(s)	26, 451
BciT130I	CCWGG	2 cut(s)	209, 462
BcoDI	GTCTC	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	209, 462
BmgT120I	GGNCC	2 cut(s)	39, 464
BmrFI	CCNGG	2 cut(s)	209, 462
BmsI	GCATC	1 cut(s)	400
BplI	GAGNNNNNCTC	2 cut(s)	231, 263
BpmI	CTGGAG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	321, 461
BsaWI	WCCGGW	1 cut(s)	291
Bse118I	RCCGGY	1 cut(s)	291
Bse21I	CCTNAGG	2 cut(s)	35, 429
BseBI	CCWGG	2 cut(s)	209, 462
BseDI	CCNNGG	2 cut(s)	321, 461
BseGI	GGATG	3 cut(s)	175, 241, 378
BseMII	CTCAG	3 cut(s)	41, 294, 420
BseX3I	CGGCCG	1 cut(s)	318
BseYI	CCCAGC	1 cut(s)	413
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	4 cut(s)	41, 320, 326, 466
BshTI	ACCGGT	1 cut(s)	291
BsiEI	CGRYCG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	4 cut(s)	41, 320, 326, 466
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	4 cut(s)	41, 320, 326, 466
BspCNI	CTCAG	3 cut(s)	42, 293, 421
BspMI	ACCTGC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	321, 461
BssNI	GRCGYC	1 cut(s)	145
Bst2UI	CCWGG	2 cut(s)	209, 462
Bst4CI	ACNGT	2 cut(s)	67, 401
BstACI	GRCGYC	1 cut(s)	145
BstDEI	CTNAG	5 cut(s)	35, 50, 280, 392, 429
BstF5I	GGATG	3 cut(s)	175, 241, 378
BstMAI	GTCTC	1 cut(s)	262
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	209, 462
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	207, 460
BstZI	CGGCCG	1 cut(s)	318
Bsu36I	CCTNAGG	2 cut(s)	35, 429
BsuRI	GGCC	4 cut(s)	41, 320, 326, 466
BtsCI	GGATG	3 cut(s)	175, 241, 378
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	39, 464
CseI	GACGC	2 cut(s)	127, 134
CspAI	ACCGGT	1 cut(s)	291
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	8 cut(s)	5, 41, 71, 247, 320, 326, 377, 466
CviKI_1	RGCY	8 cut(s)	5, 41, 71, 247, 320, 326, 377, 466
DdeI	CTNAG	5 cut(s)	35, 50, 280, 392, 429
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	318
Eco52I	CGGCCG	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	368
Eco81I	CCTNAGG	2 cut(s)	35, 429
EcoRII	CCWGG	2 cut(s)	207, 460
FaeI	CATG	1 cut(s)	178
FaiI	YATR	7 cut(s)	176, 336, 360, 423, 436, 438, 489
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	1 cut(s)	174
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	3 cut(s)	182, 248, 365
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	4 cut(s)	41, 320, 326, 466
HapII	CCGG	1 cut(s)	292
HgaI	GACGC	2 cut(s)	127, 134
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	178
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	5 cut(s)	92, 135, 225, 283, 448
Hpy188III	TCNNGA	1 cut(s)	265
Hpy99I	CGWCG	2 cut(s)	150, 472
HpyAV	CCTTC	6 cut(s)	22, 144, 160, 220, 392, 463
HpyCH4III	ACNGT	2 cut(s)	67, 401
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	5 cut(s)	35, 50, 280, 392, 429
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	112, 135
LweI	GCATC	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	395
MboII	GAAGA	5 cut(s)	18, 21, 66, 382, 452
MluCI	AATT	2 cut(s)	312, 482
MmeI	TCCRAC	2 cut(s)	102, 113
MnlI	CCTC	6 cut(s)	19, 205, 233, 277, 316, 424
MroXI	GAANNNNTTC	1 cut(s)	219
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	2 cut(s)	209, 462
MvaI	CCWGG	2 cut(s)	209, 462
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeI	CATATG	1 cut(s)	436
NlaIII	CATG	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	346
NspI	RCATGY	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	88
PciI	ACATGT	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	443
PfoI	TCCNGGA	1 cut(s)	207
PinAI	ACCGGT	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	319
PscI	ACATGT	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	207, 460
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	207, 460
PspPI	GGNCC	2 cut(s)	39, 464
SatI	GCNGC	1 cut(s)	318
Sau96I	GGNCC	2 cut(s)	39, 464
ScrFI	CCNGG	2 cut(s)	209, 462
SetI	ASST	7 cut(s)	102, 133, 222, 231, 249, 390, 430
SfaNI	GCATC	1 cut(s)	400
Sse9I	AATT	2 cut(s)	312, 482
SsiI	CCGC	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	207, 460
TaaI	ACNGT	2 cut(s)	67, 401
TaqI	TCGA	2 cut(s)	148, 264
TasI	AATT	2 cut(s)	312, 482
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	443
TscAI	CASTG	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	324, 453
TspRI	CASTG	1 cut(s)	72
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.