Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011128

Physical Location & Seq

Genomic Coordinates Forward (+)

26636294 .. 26638709

Gene Structure 2416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGACCAAATCAATTTACGATGAACAAACTTATAGACTGCTTATATCGTTTTTCATTGTCAAAGTCCAATCTCCACCCCTAGTGTTGCCATCCAAATTCGTATCTATGGCTTCCGCCACGCTCCCCTTCTTCACTCTCTCACCTCCTTCCCCTAAGGTGCAGCTGACAGTGGAAAGTTCGATGCTTTCGAGCTGTTCCCTGAGGCCGAAGGTGGTTTCCCGAATGCAGAAAGATGGCAGAGGGCGGCGAGTGTGGCGGCGAAGAAAATTGACAAAGAAGGATGACATGTTGGGATACAAGATGGAGAGAGTGCCATTTCTTGAGGAGCAGGTTCGGAAGGTAAAAGACGGAGGGCAGCTCTTGGGAATGGACATTGAGAGACTACTGTTATCGGAGGATAACCGGTTTGATTTTGTCAATGACGTAGCGGGCGAGGCCATTGAGTATGTGGAGAACAACAGAGACGAGTACGGGGGGAAGAAGAAGGCCATCCTTCAAGTGATAAGCAACCGAGTGAATGATGCTGGGTTTTTTAGACCAGAGGCATATAAAGAATCTGACCCCTTCAAGCCAGGGCCTTCTTACTTGAAAGAAGAATTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000427 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0061024 GO:0061695 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

23.13

Weight (kDa)

9.42

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24314 AT5G24314
fragaria_vesca	FvH4_7g32020 FvH4_7g32020
malus_domestica	MD01G1223100.v1.1
prunus_persica	Prupe.2G313600_v2.0.a1 Prupe.2G313600_v2.0.a1
pyrus_communis	pycom01g23240 pycom07g26660
rosa_chinensis	RchiOBHm_Chr1g0381631
rosa_laevigata	RLG00000026219
rosa_multiflora	Rmu_co8401605.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278570
rosa_rugosa	Rorug01G0429800 Rorug06G0289600
rosa_samantha	Rh1AG453100 Rh1BG410100 Rh1CG424700 Rh1DG441900
rosa_wichuraiana	Rw1G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AciI	CCGC	4 cut(s)	114, 244, 256, 428
AcsI	RAATTY	2 cut(s)	95, 596
AfaI	GTAC	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	285
AgeI	ACCGGT	1 cut(s)	402
AgsI	TTSAA	3 cut(s)	497, 568, 589
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	3 cut(s)	163, 192, 358
AluI	AGCT	3 cut(s)	163, 192, 358
Alw26I	GTCTC	2 cut(s)	373, 456
AoxI	GGCC	4 cut(s)	203, 435, 486, 575
ApeKI	GCWGC	2 cut(s)	160, 355
ApoI	RAATTY	2 cut(s)	95, 596
AsiGI	ACCGGT	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	132
AxyI	CCTNAGG	2 cut(s)	153, 200
BbvI	GCAGC	2 cut(s)	172, 367
BccI	CCATC	4 cut(s)	97, 227, 295, 497
BciT130I	CCWGG	1 cut(s)	573
BciVI	GTATCC	1 cut(s)	287
BcoDI	GTCTC	2 cut(s)	373, 456
BfaI	CTAG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	287
BisI	GCNGC	4 cut(s)	161, 245, 257, 356
BlsI	GCNGC	4 cut(s)	162, 246, 258, 357
Bme1390I	CCNGG	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	575
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	171, 511
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
BpuEI	CTTGAG	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	572
BsaWI	WCCGGW	1 cut(s)	402
Bse118I	RCCGGY	1 cut(s)	402
Bse21I	CCTNAGG	2 cut(s)	153, 200
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	572
BseGI	GGATG	3 cut(s)	89, 286, 489
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	172, 367
BseYI	CCCAGC	1 cut(s)	524
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	205, 437, 488, 577
BshTI	ACCGGT	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	373, 456
BsmBI	CGTCTC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	4 cut(s)	205, 437, 488, 577
BspACI	CCGC	4 cut(s)	114, 244, 256, 428
BspANI	GGCC	4 cut(s)	205, 437, 488, 577
BspCNI	CTCAG	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	572
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	169, 387
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	153, 200
BstF5I	GGATG	3 cut(s)	89, 286, 489
BstMAI	GTCTC	2 cut(s)	373, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 434
BstNI	CCWGG	1 cut(s)	573
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	571
BstV1I	GCAGC	2 cut(s)	172, 367
Bsu36I	CCTNAGG	2 cut(s)	153, 200
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	4 cut(s)	205, 437, 488, 577
BtsCI	GGATG	3 cut(s)	89, 286, 489
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	575
Csp6I	GTAC	1 cut(s)	469
CspAI	ACCGGT	1 cut(s)	402
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	9 cut(s)	110, 163, 192, 205, 358, 437, 488, 571, 577
CviKI_1	RGCY	9 cut(s)	110, 163, 192, 205, 358, 437, 488, 571, 577
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	153, 200
EciI	GGCGGA	1 cut(s)	103
Eco81I	CCTNAGG	2 cut(s)	153, 200
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	571
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	1 cut(s)	289
FaiI	YATR	7 cut(s)	33, 44, 107, 287, 447, 547, 549
FatI	CATG	1 cut(s)	285
FauI	CCCGC	1 cut(s)	421
Fnu4HI	GCNGC	4 cut(s)	161, 245, 257, 356
FokI	GGATG	3 cut(s)	76, 293, 476
Fsp4HI	GCNGC	4 cut(s)	161, 245, 257, 356
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	4 cut(s)	161, 245, 257, 356
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	4 cut(s)	205, 437, 488, 577
HapII	CCGG	1 cut(s)	403
Hin1II	CATG	1 cut(s)	289
HinfI	GANTC	1 cut(s)	554
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	1 cut(s)	132
Hpy188I	TCNGA	3 cut(s)	336, 394, 559
Hpy188III	TCNNGA	2 cut(s)	219, 320
HpyAV	CCTTC	9 cut(s)	136, 156, 202, 271, 331, 478, 503, 574, 588
HpyCH4III	ACNGT	2 cut(s)	169, 387
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	2 cut(s)	160, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 434
HpyF3I	CTNAG	2 cut(s)	153, 200
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	126, 325
LpnPI	CCDG	7 cut(s)	212, 314, 416, 510, 552, 558, 585
Lsp1109I	GCAGC	2 cut(s)	172, 367
LweI	GCATC	2 cut(s)	171, 511
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	423
MboII	GAAGA	5 cut(s)	121, 273, 490, 493, 605
MluCI	AATT	4 cut(s)	12, 95, 266, 596
MnlI	CCTC	8 cut(s)	153, 195, 233, 316, 344, 388, 427, 535
MseI	TTAA	1 cut(s)	604
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	2 cut(s)	253, 434
NlaIII	CATG	1 cut(s)	289
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	2 cut(s)	185, 429
PctI	GAATGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	554
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	4 cut(s)	162, 246, 258, 357
PscI	ACATGT	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	571
PspPI	GGNCC	1 cut(s)	575
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	604
SatI	GCNGC	4 cut(s)	161, 245, 257, 356
Sau96I	GGNCC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	573
SetI	ASST	9 cut(s)	145, 159, 165, 194, 213, 333, 342, 360, 426
SfaNI	GCATC	2 cut(s)	171, 511
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	4 cut(s)	12, 95, 266, 596
SsiI	CCGC	4 cut(s)	114, 244, 256, 428
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	169, 387
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	179, 188
TasI	AATT	4 cut(s)	12, 95, 266, 596
TauI	GCSGC	2 cut(s)	247, 259
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	604
Tru9I	TTAA	1 cut(s)	604
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	2 cut(s)	160, 355
TspDTI	ATGAA	2 cut(s)	36, 43
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	174
XapI	RAATTY	2 cut(s)	95, 596
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.