Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8401605.1

Orthogroup ID

OG0011128

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 425

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8401605.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

acaaagaaggatgacatgttgcgatacaaaatggagagagtgcctttcctggaggaacaggttcggaaggtaaaggatggaggacagctcatgggaatggacatcgagagactactactctcagaggacaaccggtttgattttgtgaatgaaattgcggccgaggccaacgagtatgttgagaacaaccgagatgagtatggcggtaagaagaaagccatccttcaggtgctaagtaaccgtgtgaatgatgctgggttttatagacctgaggcatatgaagaatctgaccccttcaaaccagggccgtcgtggttgaaagaattttatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000427 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0061024 GO:0061695 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

13.06

Weight (kDa)

4.88

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24314 AT5G24314
fragaria_vesca	FvH4_7g32020 FvH4_7g32020
malus_domestica	MD01G1223100.v1.1
prunus_persica	Prupe.2G313600_v2.0.a1 Prupe.2G313600_v2.0.a1
pyrus_communis	pycom01g23240 pycom07g26660
rosa_chinensis	RchiOBHm_Chr1g0381631
rosa_laevigata	RLG00000026219
rosa_multiflora	Rmu_co8401605.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278570
rosa_rugosa	Rorug01G0429800 Rorug06G0289600
rosa_samantha	Rh1AG453100 Rh1BG410100 Rh1CG424700 Rh1DG441900
rosa_wichuraiana	Rw1G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	158, 204
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	15
AgeI	ACCGGT	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	298, 319
AjnI	CCWGG	2 cut(s)	48, 301
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	103
AoxI	GGCC	3 cut(s)	159, 165, 305
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AsiGI	ACCGGT	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	305
AxyI	CCTNAGG	1 cut(s)	270
BccI	CCATC	2 cut(s)	71, 227
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	50, 303
BcoDI	GTCTC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	2 cut(s)	50, 303
BmgT120I	GGNCC	1 cut(s)	305
BmrFI	CCNGG	2 cut(s)	50, 303
BmsI	GCATC	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BpmI	CTGGAG	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	162, 302
BsaWI	WCCGGW	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	132
Bse21I	CCTNAGG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	50, 303
BseDI	CCNNGG	2 cut(s)	162, 302
BseGI	GGATG	3 cut(s)	16, 82, 219
BseMII	CTCAG	2 cut(s)	135, 261
BseX3I	CGGCCG	1 cut(s)	159
BseYI	CCCAGC	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	161, 167, 307
BshTI	ACCGGT	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	161, 167, 307
BspACI	CCGC	2 cut(s)	158, 204
BspANI	GGCC	3 cut(s)	161, 167, 307
BspCNI	CTCAG	2 cut(s)	134, 262
BsrFI	RCCGGY	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	162, 302
Bst2UI	CCWGG	2 cut(s)	50, 303
Bst4CI	ACNGT	1 cut(s)	242
BstDEI	CTNAG	3 cut(s)	121, 233, 270
BstF5I	GGATG	3 cut(s)	16, 82, 219
BstMAI	GTCTC	1 cut(s)	103
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	50, 303
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	2 cut(s)	48, 301
BstZI	CGGCCG	1 cut(s)	159
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	161, 167, 307
BtsCI	GGATG	3 cut(s)	16, 82, 219
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	305
CspAI	ACCGGT	1 cut(s)	132
CviAII	CATG	2 cut(s)	16, 91
CviJI	RGCY	5 cut(s)	88, 161, 167, 218, 307
CviKI_1	RGCY	5 cut(s)	88, 161, 167, 218, 307
DdeI	CTNAG	3 cut(s)	121, 233, 270
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	159
Eco52I	CGGCCG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	209
Eco81I	CCTNAGG	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	48, 301
FaeI	CATG	2 cut(s)	19, 94
FaiI	YATR	8 cut(s)	17, 92, 177, 201, 264, 277, 279, 330
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	2 cut(s)	15, 90
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	3 cut(s)	23, 89, 206
Fsp4HI	GCNGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	159
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	161, 167, 307
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	2 cut(s)	19, 94
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	66, 124, 289
Hpy188III	TCNNGA	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	3 cut(s)	61, 233, 304
HpyCH4III	ACNGT	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	3 cut(s)	121, 233, 270
Hsp92II	CATG	2 cut(s)	19, 94
LpnPI	CCDG	9 cut(s)	35, 44, 62, 146, 212, 240, 282, 288, 315
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	236
MboII	GAAGA	2 cut(s)	223, 293
MluCI	AATT	2 cut(s)	153, 323
MnlI	CCTC	5 cut(s)	46, 74, 118, 157, 265
MroXI	GAANNNNTTC	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	2 cut(s)	50, 303
MvaI	CCWGG	2 cut(s)	50, 303
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeI	CATATG	1 cut(s)	277
NlaIII	CATG	2 cut(s)	19, 94
NmeAIII	GCCGAG	1 cut(s)	187
NspI	RCATGY	1 cut(s)	19
PciI	ACATGT	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	48
PinAI	ACCGGT	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	48, 301
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	48, 301
PspPI	GGNCC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	95
SatI	GCNGC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	50, 303
SetI	ASST	5 cut(s)	63, 72, 90, 231, 271
SfaNI	GCATC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	153, 323
SsiI	CCGC	2 cut(s)	158, 204
StyD4I	CCNGG	2 cut(s)	48, 301
TaaI	ACNGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	153, 323
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	165, 294
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.