Prupe.3G021100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017701
Physical Location & Seq
Forward (+)
1534741 .. 1535682
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G021100.1

Sequence Viewer

Length: 555 bp
ATGCAGCTTTCAGCAATGGAGTTGAAACTCAGAAGAAAAAACACTTGTTCATCTGCAGTTTTGCTGATTCTCTGCACAATATTGTTATTGGTCACTACTAACTTGGGTTCTGCAGATGAAGGAGAGCAGCAGCATAAGGTGGTGGAGGAAAGCAGAAATGATGATGCACCAGAAAAACCATCTTTGTGGAAGATGACCAGAAATGCTTTTCCTCCGTACACATCTTCACCTTTGAGGATCCAAAGCTACTTGGAGAAGGCCAAGGCGCTTTTGAACCAAGGGCAAGCCTACATCTTCCCTCCCAGTTTAGATTTTAGAGGGAGTGGTAATAATATTTATGTTGGAGAGGAGGCTGGGAGCAGAGGACGAGGAGGAGGAGCTGGAGAGAAGGTGAGAGAGGTTGTGGGGAATAGTTTTGGGAAGAGCAAAGAGACGGTGGACTCCTCGGCTAAATCCGCAGCCAAATTAGTTGGGGAAACAGTGCAGAAGACGAAGGAGAAAGTGCAGAGGAGCTTTTCTGACGGAGAAAGTAGAGAACCTCAATCTGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.07

Weight (kDa)

8.83

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37070
malus_domestica MD17G1163900.v1.1
prunus_persica Prupe.3G021100_v2.0.a1
pyrus_communis pycom17g15700
rosa_laevigata RLG00000020430
rosa_multiflora Rmu_sc0006867.1_g000027
rosa_roxburghii Rroxscaffold_2G00097900
rosa_rugosa Rorug02G0413500
rosa_samantha Rh2BG485500 Rh2CG459500 Rh2DG494700
rosa_wichuraiana Rw2G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 456
AclWI GGATC 2 cut(s) 232, 245
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 2 cut(s) 25, 274
AluBI AGCT 5 cut(s) 7, 246, 380, 513, 550
AluI AGCT 5 cut(s) 7, 246, 380, 513, 550
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 2 cut(s) 232, 245
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 4 cut(s) 4, 127, 130, 458
AspLEI GCGC 1 cut(s) 268
AsuHPI GGTGA 2 cut(s) 219, 403
BamHI GGATCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 552
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 4 cut(s) 16, 139, 142, 470
BccI CCATC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 1 cut(s) 553
BfmI CTRYAG 2 cut(s) 54, 111
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 4 cut(s) 5, 128, 131, 459
BlsI GCNGC 4 cut(s) 6, 129, 132, 460
BmiI GGNNCC 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 261, 277, 444
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 261, 277, 444
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 43, 537
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 6 cut(s) 362, 384, 387, 390, 433, 523
BseXI GCAGC 4 cut(s) 16, 139, 142, 470
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 3 cut(s) 58, 503, 524
BshFI GGCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 552
BsmAI GTCTC 1 cut(s) 425
BsmBI CGTCTC 1 cut(s) 425
BsnI GGCC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 1 cut(s) 456
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 42, 538
BspLI GGNNCC 1 cut(s) 239
BspMAI CTGCAG 2 cut(s) 58, 115
BspPI GGATC 2 cut(s) 232, 245
BspQI GCTCTTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 3 cut(s) 261, 277, 444
BssMI GATC 1 cut(s) 237
BssT1I CCWWGG 2 cut(s) 261, 277
Bst4CI ACNGT 2 cut(s) 436, 481
Bst6I CTCTTC 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 29, 546
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstSFI CTRYAG 2 cut(s) 54, 111
BstV1I GCAGC 4 cut(s) 16, 139, 142, 470
BstV2I GAAGAC 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 186
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 1 cut(s) 285
CfoI GCGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 217
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 29, 546
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 2 cut(s) 261, 277
Eco24I GRGCYC 1 cut(s) 552
Eco53kI GAGCTC 1 cut(s) 550
EcoICRI GAGCTC 1 cut(s) 550
EcoT14I CCWWGG 2 cut(s) 261, 277
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 2 cut(s) 261, 277
Esp3I CGTCTC 1 cut(s) 425
FaiI YATR 2 cut(s) 135, 339
Fnu4HI GCNGC 4 cut(s) 5, 128, 131, 459
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 4 cut(s) 5, 128, 131, 459
FspBI CTAG 1 cut(s) 553
GlaI GCGC 1 cut(s) 267
GluI GCNGC 4 cut(s) 5, 128, 131, 459
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 402
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 1 cut(s) 260
HhaI GCGC 1 cut(s) 268
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 2 cut(s) 67, 440
HphI GGTGA 2 cut(s) 219, 403
Hpy166II GTNNAC 2 cut(s) 219, 439
Hpy188I TCNGA 3 cut(s) 32, 520, 547
Hpy8I GTNNAC 2 cut(s) 219, 439
HpyAV CCTTC 4 cut(s) 113, 250, 382, 487
HpyCH4III ACNGT 2 cut(s) 436, 481
HpyCH4V TGCA 7 cut(s) 4, 56, 75, 113, 167, 484, 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 2 cut(s) 29, 546
HspAI GCGC 1 cut(s) 266
Kzo9I GATC 1 cut(s) 237
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 3 cut(s) 357, 377, 510
LpnPI CCDG 5 cut(s) 183, 211, 316, 339, 366
Lsp1109I GCAGC 4 cut(s) 16, 139, 142, 470
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 553
MaeIII GTNAC 1 cut(s) 91
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 6 cut(s) 45, 202, 216, 286, 433, 499
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 1 cut(s) 464
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 1 cut(s) 237
NlaIV GGNNCC 1 cut(s) 239
NmeAIII GCCGAG 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 4 cut(s) 6, 129, 132, 460
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 239
PstI CTGCAG 2 cut(s) 58, 115
PsuI RGATCY 1 cut(s) 237
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 184
SacI GAGCTC 1 cut(s) 552
SapI GCTCTTC 1 cut(s) 416
SatI GCNGC 4 cut(s) 5, 128, 131, 459
Sau3AI GATC 1 cut(s) 237
SchI GAGTC 1 cut(s) 434
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 2 cut(s) 54, 111
SmiMI CAYNNNNRTG 1 cut(s) 184
Sse9I AATT 1 cut(s) 464
SsiI CCGC 1 cut(s) 456
SspI AATATT 2 cut(s) 81, 334
SspMI CTAG 1 cut(s) 553
SstI GAGCTC 1 cut(s) 552
StyI CCWWGG 2 cut(s) 261, 277
TaaI ACNGT 2 cut(s) 436, 481
TasI AATT 1 cut(s) 464
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 4 cut(s) 4, 127, 130, 458
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 39, 132
TspGWI ACGGA 2 cut(s) 204, 537
TspRI CASTG 1 cut(s) 486
XspI CTAG 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.