Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017701

Physical Location & Seq

Genomic Coordinates Reverse (-)

64901784 .. 64902734

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020430

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGCTCAAACACACAAGAATTGCTTCTACTGTTCTGATTCTTCTCTGCATCTTCATATATACTTTTGCACTTACGGTTCGAGATGGCGAAGAGCGAGAGAGAGAAGAAGTACGAATCGCCAAACCATCGTTATGGGAGATTTTCAAAAATGGCTTCTCTGTGTACACATCTTCGCCCTTGAAAGTTACAAGCTACTGGGAGAAGGTCAAGTCGCTTGTACGCCAACTACATGCCTACGTCTTCCCTCCCAATTTGGATTTTAGGGGAACTAGCAGTAGTGAAGAAGCAAGAGTCGATCAACCTAGCAGTCCTAGAAGTGGTGGTGATGGTGGAGGTGGAGCTGGAGAGAAGGTGAAAGAGGCGGTGAGCAAGAGTTTCGGGAAGAGCAAAGCAACTGTGGAGGACACGGCTAAATCAGCAGCTAAAGCAGTAGGTGAAACTGTGCAGAAGACCAAGGAGAAGGTGAAAAGGAGCTTTTCTAACAGAGAAGCAGGTCATCAAACTCATGAACCCGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.28

Weight (kDa)

9.28

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37070
malus_domestica	MD17G1163900.v1.1
prunus_persica	Prupe.3G021100_v2.0.a1
pyrus_communis	pycom17g15700
rosa_laevigata	RLG00000020430
rosa_multiflora	Rmu_sc0006867.1_g000027
rosa_roxburghii	Rroxscaffold_2G00097900
rosa_rugosa	Rorug02G0413500
rosa_samantha	Rh2BG485500 Rh2CG459500 Rh2DG494700
rosa_wichuraiana	Rw2G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AciI	CCGC	1 cut(s)	365
AfaI	GTAC	3 cut(s)	114, 167, 222
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	148, 184
AluBI	AGCT	6 cut(s)	7, 195, 344, 425, 477, 520
AluI	AGCT	6 cut(s)	7, 195, 344, 425, 477, 520
Alw21I	GWGCWC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	515
ApeKI	GCWGC	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	25
AsuHPI	GGTGA	5 cut(s)	338, 367, 379, 449, 478
AvaI	CYCGRG	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	235, 458
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	3 cut(s)	80, 136, 323
BceAI	ACGGC	1 cut(s)	426
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BfaI	CTAG	3 cut(s)	273, 306, 315
BfuAI	ACCTGC	1 cut(s)	485
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	515
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	2 cut(s)	235, 458
BpmI	CTGGAG	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	485
BspQI	GCTCTTC	2 cut(s)	87, 380
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	456
Bst4CI	ACNGT	4 cut(s)	34, 79, 400, 445
Bst6I	CTCTTC	2 cut(s)	87, 380
BstAUI	TGTACA	1 cut(s)	165
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 428
BstNSI	RCATGY	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	434
BstV2I	GAAGAC	2 cut(s)	235, 458
BstXI	CCANNNNNNTGG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	485
CciI	TCATGA	1 cut(s)	508
Csp6I	GTAC	3 cut(s)	113, 166, 221
CviAII	CATG	2 cut(s)	233, 509
CviJI	RGCY	8 cut(s)	7, 156, 195, 344, 413, 425, 477, 520
CviKI_1	RGCY	8 cut(s)	7, 156, 195, 344, 413, 425, 477, 520
CviQI	GTAC	3 cut(s)	113, 166, 221
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	87, 380
EarI	CTCTTC	2 cut(s)	87, 380
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	2 cut(s)	236, 512
FaiI	YATR	6 cut(s)	59, 61, 63, 136, 234, 510
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FatI	CATG	2 cut(s)	232, 508
Fnu4HI	GCNGC	1 cut(s)	423
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	3 cut(s)	273, 306, 315
GluI	GCNGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	366
Hin1II	CATG	2 cut(s)	236, 512
HinfI	GANTC	3 cut(s)	40, 117, 294
HphI	GGTGA	5 cut(s)	338, 367, 379, 449, 478
Hpy166II	GTNNAC	2 cut(s)	166, 168
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	3 cut(s)	83, 382, 509
Hpy8I	GTNNAC	2 cut(s)	166, 168
HpyAV	CCTTC	3 cut(s)	199, 346, 457
HpyCH4III	ACNGT	4 cut(s)	34, 79, 400, 445
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	51, 71, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 428
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	236, 512
Kzo9I	GATC	1 cut(s)	298
LguI	GCTCTTC	2 cut(s)	87, 380
LmnI	GCTCC	3 cut(s)	4, 341, 474
LpnPI	CCDG	3 cut(s)	184, 330, 480
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	3 cut(s)	273, 306, 315
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	9 cut(s)	35, 46, 104, 119, 165, 235, 296, 397, 463
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	2 cut(s)	21, 253
MlyI	GAGTC	1 cut(s)	303
MnlI	CCTC	4 cut(s)	258, 329, 355, 397
MroXI	GAANNNNTTC	1 cut(s)	25
MslI	CAYNNNNRTG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	419, 428
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	2 cut(s)	236, 512
NspI	RCATGY	1 cut(s)	236
PagI	TCATGA	1 cut(s)	508
PciSI	GCTCTTC	2 cut(s)	87, 380
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	40, 117
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	9
RsaI	GTAC	3 cut(s)	114, 167, 222
RsaNI	GTAC	3 cut(s)	113, 166, 221
RseI	CAYNNNNRTG	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	2 cut(s)	87, 380
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	133
Sse9I	AATT	2 cut(s)	21, 253
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	3 cut(s)	273, 306, 315
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	4 cut(s)	34, 79, 400, 445
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	82, 297
TasI	AATT	2 cut(s)	21, 253
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	40, 117
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	46, 525
XceI	RCATGY	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	3 cut(s)	273, 306, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.