Rroxscaffold_2G00097900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017701
Physical Location & Seq
Forward (+)
19104370 .. 19105318
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097900.1

Sequence Viewer

Length: 633 bp
ATGGAACTCAAACACACAAGAATTGCTTCTACTGTTCTGATTCTTCTCTGCATCCTCGTCTATACTTTTGCATTAACGGTTCGAGATGGCGAAGAGCGGGAGAGAGAAGAAGTACGAATTGCCAAACCATCGTTATGGGAGATTTTCAAAAATGGCTTCTCTGTGTACACATCTTCGCCCTTGAAAGTTACAAGCTACTGGGAGAACGTCAAGTCGCTTGTACGCCAATTACATGCCTACTTCTTCCCTCCCAATTTGGAGTATGTTCCTCAACTTGATCATCTACTTAGCAAGCTTTGTTCTTCAGTTCTAGTACTTAAATTTGTGTTGAAAGTTATGTGTTGTTCATGTGGTGGGGCTTGTTGTGAGTTTCGGGGAACTAGCAGTAGTGAAGAAGCAAGAGTCGATCAACCTAGCAGCCCTAGAATTGGTGGTGATGGTGGAGGTGGAGCTGGAGAGAAGGTGAAAGAGGCGGTGAGCAAGAGTTTCGGGAAGAGCAAAGCAACTGTGGAGGACACTGCTAATTCAGTTGCTAAAGCAGTAGGTGAAACTGTGCAGAAGACCAAGGAGAAGGTGAAAAGGAGCTTTTCTAACAGAGAAGCAGGTCATCAAACTCATGAACCCGAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.19

Weight (kDa)

8.63

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37070
malus_domestica MD17G1163900.v1.1
prunus_persica Prupe.3G021100_v2.0.a1
pyrus_communis pycom17g15700
rosa_laevigata RLG00000020430
rosa_multiflora Rmu_sc0006867.1_g000027
rosa_roxburghii Rroxscaffold_2G00097900
rosa_rugosa Rorug02G0413500
rosa_samantha Rh2BG485500 Rh2CG459500 Rh2DG494700
rosa_wichuraiana Rw2G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 593
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 2 cut(s) 97, 473
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 4 cut(s) 114, 167, 222, 315
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 3 cut(s) 148, 184, 331
AluBI AGCT 5 cut(s) 195, 295, 452, 585, 628
AluI AGCT 5 cut(s) 195, 295, 452, 585, 628
Ama87I CYCGRG 1 cut(s) 623
ApeKI GCWGC 1 cut(s) 417
ApoI RAATTY 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 25
AsuHPI GGTGA 5 cut(s) 446, 475, 487, 557, 586
AvaI CYCGRG 1 cut(s) 623
BbsI GAAGAC 1 cut(s) 566
BbvI GCAGC 1 cut(s) 429
BccI CCATC 3 cut(s) 80, 136, 431
BcgI CGANNNNNNTGC 2 cut(s) 469, 503
BclI TGATCA 1 cut(s) 277
BfaI CTAG 4 cut(s) 311, 381, 414, 423
BfuAI ACCTGC 1 cut(s) 593
BisI GCNGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 419
BmcAI AGTACT 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 623
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 566
BpmI CTGGAG 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 564
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 564
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 429
BsgI GTGCAG 1 cut(s) 575
BsiHKCI CYCGRG 1 cut(s) 623
BslI CCNNNNNNNGG 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 623
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 2 cut(s) 277, 406
BspACI CCGC 2 cut(s) 97, 473
BspHI TCATGA 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 593
BspQI GCTCTTC 2 cut(s) 87, 488
BsrBI CCGCTC 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 2 cut(s) 277, 406
BssT1I CCWWGG 1 cut(s) 564
Bst4CI ACNGT 4 cut(s) 34, 79, 508, 553
Bst6I CTCTTC 2 cut(s) 87, 488
BstAUI TGTACA 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 2 cut(s) 280, 409
BstMBI GATC 2 cut(s) 277, 406
BstNSI RCATGY 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 429
BstV2I GAAGAC 1 cut(s) 566
BstXI CCANNNNNNTGG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 1 cut(s) 516
BveI ACCTGC 1 cut(s) 593
Cac8I GCNNGC 1 cut(s) 293
CciI TCATGA 1 cut(s) 616
Csp6I GTAC 4 cut(s) 113, 166, 221, 314
CviAII CATG 3 cut(s) 233, 348, 617
CviJI RGCY 8 cut(s) 156, 195, 295, 359, 420, 452, 585, 628
CviKI_1 RGCY 8 cut(s) 156, 195, 295, 359, 420, 452, 585, 628
CviQI GTAC 4 cut(s) 113, 166, 221, 314
DdeI CTNAG 1 cut(s) 287
DpnI GATC 2 cut(s) 279, 408
DpnII GATC 2 cut(s) 277, 406
Eam1104I CTCTTC 2 cut(s) 87, 488
EarI CTCTTC 2 cut(s) 87, 488
Eco130I CCWWGG 1 cut(s) 564
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 3 cut(s) 236, 351, 620
FaiI YATR 7 cut(s) 63, 136, 234, 264, 338, 349, 618
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FatI CATG 3 cut(s) 232, 347, 616
FauI CCCGC 1 cut(s) 90
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 418
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 418
FspBI CTAG 4 cut(s) 311, 381, 414, 423
GluI GCNGC 1 cut(s) 418
GsuI CTGGAG 1 cut(s) 474
Hin1II CATG 3 cut(s) 236, 351, 620
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 2 cut(s) 40, 402
HphI GGTGA 5 cut(s) 446, 475, 487, 557, 586
Hpy166II GTNNAC 2 cut(s) 166, 168
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 3 cut(s) 83, 490, 617
Hpy8I GTNNAC 2 cut(s) 166, 168
HpyAV CCTTC 2 cut(s) 454, 565
HpyCH4III ACNGT 4 cut(s) 34, 79, 508, 553
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 51, 71, 556
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 3 cut(s) 236, 351, 620
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 2 cut(s) 277, 406
LguI GCTCTTC 2 cut(s) 87, 488
LmnI GCTCC 2 cut(s) 449, 582
LpnPI CCDG 3 cut(s) 184, 438, 588
Lsp1109I GCAGC 1 cut(s) 429
LweI GCATC 1 cut(s) 60
MaeI CTAG 4 cut(s) 311, 381, 414, 423
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 187
MalI GATC 2 cut(s) 279, 408
MbiI CCGCTC 1 cut(s) 97
MboI GATC 2 cut(s) 277, 406
MboII GAAGA 9 cut(s) 35, 104, 119, 165, 235, 294, 404, 505, 571
MluCI AATT 7 cut(s) 21, 117, 227, 253, 320, 426, 523
MlyI GAGTC 1 cut(s) 411
MnlI CCTC 6 cut(s) 65, 258, 279, 437, 463, 505
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 2 cut(s) 74, 318
MslI CAYNNNNRTG 1 cut(s) 133
NdeII GATC 2 cut(s) 277, 406
NlaIII CATG 3 cut(s) 236, 351, 620
NspI RCATGY 1 cut(s) 236
PagI TCATGA 1 cut(s) 616
PciSI GCTCTTC 2 cut(s) 87, 488
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 419
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
RsaI GTAC 4 cut(s) 114, 167, 222, 315
RsaNI GTAC 4 cut(s) 113, 166, 221, 314
RseI CAYNNNNRTG 1 cut(s) 133
SapI GCTCTTC 2 cut(s) 87, 488
SaqAI TTAA 2 cut(s) 74, 318
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 2 cut(s) 277, 406
ScaI AGTACT 1 cut(s) 315
SchI GAGTC 1 cut(s) 411
SfaNI GCATC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 133
Sse9I AATT 7 cut(s) 21, 117, 227, 253, 320, 426, 523
SsiI CCGC 2 cut(s) 97, 473
SspMI CTAG 4 cut(s) 311, 381, 414, 423
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 4 cut(s) 34, 79, 508, 553
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 82, 405
TasI AATT 7 cut(s) 21, 117, 227, 253, 320, 426, 523
TatI WGTACW 2 cut(s) 165, 313
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 2 cut(s) 74, 318
Tru9I TTAA 2 cut(s) 74, 318
TscAI CASTG 1 cut(s) 523
TseI GCWGC 1 cut(s) 417
TspDTI ATGAA 2 cut(s) 336, 633
TspRI CASTG 1 cut(s) 523
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 4 cut(s) 311, 381, 414, 423
ZrmI AGTACT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.