pycom17g15700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0017701
Physical Location & Seq
Reverse (-)
13705920 .. 13706791
872 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g15700.2

Sequence Viewer

Length: 540 bp
ATGGAGTTTAAACCCAGAATTTGTTCTTCTGGTATTCTGGTGATTCTCTGCATATTTTTCTTGATCAATACTTGGGCGCCCACAGGAGTGTTGGGAGAAGGAGAGCAGCAGCAGCAGTATAAGATGGAGGAAGAGAGAGTTAATGAACAACCCAAAAAGCCATCTATGTGGGAGATGACTAAGAATGCTTTTTCTTTGTACACATCTTCCCCTTTGAGGGCTCCAACATACTTGGACAAGTCCAAAACCCTATTTAATCAAATTCGAGCTTATTTCTTCCCCCCTAATTTAGATTTTAGGGGTAGTATGGGGAATATTGAAGTTGAGCCCGGTAGCAGTGGCGGCGATGGAGCTGGAGGGAAGGTGACGGAGGTGGTTGGGAAGAGTTTTGGCAAGAGCAAAGAGACGGTGGAGGACTCGGCGAAATCAGCAGCCAAAATAGTTGGGGAGACGGTGCAGAAGACAAAGGAGAAAGTGAAGAAGAGCTTTTCCGGCAGTGATAAAAACACAGAAAGTAAAGAAGCTCAATCTGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.77

Weight (kDa)

8.42

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37070
malus_domestica MD17G1163900.v1.1
prunus_persica Prupe.3G021100_v2.0.a1
pyrus_communis pycom17g15700
rosa_laevigata RLG00000020430
rosa_multiflora Rmu_sc0006867.1_g000027
rosa_roxburghii Rroxscaffold_2G00097900
rosa_rugosa Rorug02G0413500
rosa_samantha Rh2BG485500 Rh2CG459500 Rh2DG494700
rosa_wichuraiana Rw2G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 1 cut(s) 342
AcsI RAATTY 2 cut(s) 18, 261
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 2 cut(s) 216, 217
AgsI TTSAA 1 cut(s) 320
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 5 cut(s) 269, 353, 486, 524, 535
AluI AGCT 5 cut(s) 269, 353, 486, 524, 535
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 2 cut(s) 398, 443
ApeKI GCWGC 4 cut(s) 106, 109, 112, 431
ApoI RAATTY 2 cut(s) 18, 261
Asp700I GAANNNNTTC 1 cut(s) 22
AspLEI GCGC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 2 cut(s) 52, 376
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 3 cut(s) 223, 330, 537
BbsI GAAGAC 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 4 cut(s) 118, 121, 124, 443
BccI CCATC 3 cut(s) 118, 169, 341
BclI TGATCA 1 cut(s) 63
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 2 cut(s) 398, 443
BfaI CTAG 1 cut(s) 538
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 5 cut(s) 107, 110, 113, 343, 432
BlsI GCNGC 5 cut(s) 108, 111, 114, 344, 433
Bme1390I CCNGG 1 cut(s) 330
BmiI GGNNCC 2 cut(s) 78, 222
BmrFI CCNGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 467
BpmI CTGGAG 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 217
BseLI CCNNNNNNNGG 2 cut(s) 216, 217
BseMII CTCAG 1 cut(s) 522
BseXI GCAGC 4 cut(s) 118, 121, 124, 443
BsgI GTGCAG 1 cut(s) 476
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 2 cut(s) 330, 492
BslI CCNNNNNNNGG 2 cut(s) 216, 217
BsmAI GTCTC 2 cut(s) 398, 443
BsmBI CGTCTC 2 cut(s) 398, 443
BsmI GAATGC 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 223, 330, 537
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 78, 222
BspQI GCTCTTC 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 76
BsrGI TGTACA 1 cut(s) 198
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 409, 454
Bst6I CTCTTC 3 cut(s) 126, 377, 476
BstACI GRCGYC 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 180, 531
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 2 cut(s) 398, 443
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 4 cut(s) 112, 342, 428, 492
BstSCI CCNGG 1 cut(s) 328
BstV1I GCAGC 4 cut(s) 118, 121, 124, 443
BstV2I GAAGAC 1 cut(s) 467
BstXI CCANNNNNNTGG 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 360
BtsI GCAGTG 2 cut(s) 343, 502
BtsIMutI CAGTG 2 cut(s) 343, 502
CfoI GCGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 199
CviJI RGCY 9 cut(s) 160, 221, 269, 328, 353, 434, 486, 524, 535
CviKI_1 RGCY 9 cut(s) 160, 221, 269, 328, 353, 434, 486, 524, 535
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 2 cut(s) 180, 531
DinI GGCGCC 1 cut(s) 78
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
DraI TTTAAA 1 cut(s) 10
Eam1104I CTCTTC 3 cut(s) 126, 377, 476
EarI CTCTTC 3 cut(s) 126, 377, 476
Ecl136II GAGCTC 1 cut(s) 535
Eco24I GRGCYC 3 cut(s) 223, 330, 537
Eco53kI GAGCTC 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 535
EcoT38I GRGCYC 3 cut(s) 223, 330, 537
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
Esp3I CGTCTC 2 cut(s) 398, 443
FaiI YATR 5 cut(s) 53, 120, 167, 229, 308
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 5 cut(s) 107, 110, 113, 343, 432
FriOI GRGCYC 3 cut(s) 223, 330, 537
Fsp4HI GCNGC 5 cut(s) 107, 110, 113, 343, 432
FspBI CTAG 1 cut(s) 538
GlaI GCGC 1 cut(s) 78
GluI GCNGC 5 cut(s) 107, 110, 113, 343, 432
GsuI CTGGAG 1 cut(s) 375
HaeII RGCGCY 1 cut(s) 80
HapII CCGG 2 cut(s) 330, 492
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 77
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 2 cut(s) 43, 416
HpaII CCGG 2 cut(s) 330, 492
HphI GGTGA 2 cut(s) 52, 376
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 532
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 92, 355
HpyCH4III ACNGT 2 cut(s) 409, 454
HpyCH4V TGCA 2 cut(s) 51, 457
HpyF10VI GCNNNNNNNGC 4 cut(s) 112, 342, 428, 492
HpyF3I CTNAG 2 cut(s) 180, 531
Hsp92I GRCGYC 1 cut(s) 77
HspAI GCGC 1 cut(s) 77
KasI GGCGCC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 2 cut(s) 226, 350
LpnPI CCDG 7 cut(s) 15, 23, 28, 69, 339, 343, 505
Lsp1109I GCAGC 4 cut(s) 118, 121, 124, 443
MaeI CTAG 1 cut(s) 538
MaeIII GTNAC 1 cut(s) 364
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 8 cut(s) 18, 143, 198, 268, 394, 472, 490, 493
MhlI GDGCHC 3 cut(s) 223, 330, 537
MluCI AATT 3 cut(s) 18, 261, 286
Mly113I GGCGCC 1 cut(s) 77
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 5 cut(s) 121, 210, 350, 364, 406
MroXI GAANNNNTTC 1 cut(s) 22
MseI TTAA 3 cut(s) 9, 141, 255
MslI CAYNNNNRTG 2 cut(s) 86, 166
MspI CCGG 2 cut(s) 330, 492
MspR9I CCNGG 1 cut(s) 330
MssI GTTTAAAC 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 190
MwoI GCNNNNNNNGC 4 cut(s) 112, 342, 428, 492
NarI GGCGCC 1 cut(s) 77
NciI CCSGG 1 cut(s) 330
NdeII GATC 1 cut(s) 63
NlaIV GGNNCC 2 cut(s) 78, 222
NmeAIII GCCGAG 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 364
OliI CACNNNNGTG 1 cut(s) 86
PciSI GCTCTTC 1 cut(s) 476
PctI GAATGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 5 cut(s) 108, 111, 114, 344, 433
PleI GAGTC 1 cut(s) 410
PluTI GGCGCC 1 cut(s) 80
PmeI GTTTAAAC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 537
PspN4I GGNNCC 2 cut(s) 78, 222
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 2 cut(s) 86, 166
SacI GAGCTC 1 cut(s) 537
SapI GCTCTTC 1 cut(s) 476
SaqAI TTAA 3 cut(s) 9, 141, 255
SatI GCNGC 5 cut(s) 107, 110, 113, 343, 432
Sau3AI GATC 1 cut(s) 63
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 3 cut(s) 223, 330, 537
SetI ASST 7 cut(s) 271, 355, 366, 375, 488, 526, 537
SfoI GGCGCC 1 cut(s) 78
SmiMI CAYNNNNRTG 2 cut(s) 86, 166
Sse9I AATT 3 cut(s) 18, 261, 286
SsiI CCGC 1 cut(s) 342
SspDI GGCGCC 1 cut(s) 76
SspI AATATT 1 cut(s) 316
SspMI CTAG 1 cut(s) 538
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 2 cut(s) 409, 454
TaqI TCGA 1 cut(s) 265
TasI AATT 3 cut(s) 18, 261, 286
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 3 cut(s) 9, 141, 255
Tru9I TTAA 3 cut(s) 9, 141, 255
TscAI CASTG 2 cut(s) 343, 502
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 4 cut(s) 106, 109, 112, 431
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 2 cut(s) 343, 502
XapI RAATTY 2 cut(s) 18, 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.