Rmu_sc0006867.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006867.1
OG0017701
Physical Location & Seq
Reverse (-)
140450 .. 142790
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006867.1_g000027.1.cds

Sequence Viewer

Length: 999 bp
atggaactcaaacacacaagaattgcttctactgttctgattcttctctgcatcctcgtctatacttttgcatttacggttcgagatggcgaagagcgagagagggaagaagtacgaattgccaaaccatcgttatgggagattttcaaaaatggcttctctgtgtacacatcttcgcctttgaaagttacaagctactgggagaaggtcaagtcgcttgtacgccaactacatgcctacttcttccctcccaatttggagtatgttcctcagctcgatcatctacttagcaagctttgttcttcagttctagtactttgtgttgaaagttatgagttgttcatgtgttttaggggaactagctgtagtgaagaagcaagagtcgatcaacctagcagtcctagaattggtggtgatggtggaggtggagctggagagaaggtgaaagaggcggtgagcaagagtttcgggaagagcaaagcaactgtggaggacacggctaaatcagctgctaaagcagtaggtgaaactgtgcagaagaccaaggagaaggtgaaaaggagcttttctaacagagaagcagggagacatgcgaagtggcggccgccagatccgatcgcatccagcactggccacgacttggtgagacagtacatgttctcggcttgtggaggaaagctccgtgcgatagtgataatccggcaaggagaaaggttggagagagtcgtttggatctatcggcgtttctttcccggaggcatggtcgaggagacgccggctgaggcgcaagcaagcttgatcgaccctgtgatgcggtgggggataggtcggccgccggagacggaggggaaggctctattggcttgggtttgggtatggttatctaagctcgggctcaaccttgggttgatggggcagaggagtcttcctgctaggcaaatattgatttgggcttgggccttcgggcttgggctttggtcaaggcaatctgggccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

37.22

Weight (kDa)

9.51

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37070
malus_domestica MD17G1163900.v1.1
prunus_persica Prupe.3G021100_v2.0.a1
pyrus_communis pycom17g15700
rosa_laevigata RLG00000020430
rosa_multiflora Rmu_sc0006867.1_g000027
rosa_roxburghii Rroxscaffold_2G00097900
rosa_rugosa Rorug02G0413500
rosa_samantha Rh2BG485500 Rh2CG459500 Rh2DG494700
rosa_wichuraiana Rw2G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 640
AciI CCGC 5 cut(s) 452, 601, 605, 814, 833
AclWI GGATC 2 cut(s) 605, 740
AcoI YGGCCR 3 cut(s) 602, 631, 830
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 773
AfaI GTAC 5 cut(s) 114, 167, 222, 315, 653
AfiI CCNNNNNNNGG 2 cut(s) 407, 640
AflIII ACRYGT 1 cut(s) 654
AgsI TTSAA 3 cut(s) 148, 184, 326
AjuI GAANNNNNNNTTGG 2 cut(s) 842, 874
Alw26I GTCTC 4 cut(s) 580, 640, 764, 833
AlwI GGATC 2 cut(s) 605, 740
Ama87I CYCGRG 1 cut(s) 890
AoxI GGCC 5 cut(s) 602, 631, 830, 957, 992
ApaI GGGCCC 1 cut(s) 996
ApeKI GCWGC 1 cut(s) 509
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 3 cut(s) 957, 992, 993
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 6 cut(s) 425, 454, 466, 536, 565, 655
AvaI CYCGRG 1 cut(s) 890
BaeGI GKGCMC 1 cut(s) 996
BalI TGGCCA 1 cut(s) 633
BanII GRGCYC 2 cut(s) 897, 996
BbsI GAAGAC 2 cut(s) 545, 917
BbvCI CCTCAGC 2 cut(s) 270, 780
BbvI GCAGC 1 cut(s) 496
BccI CCATC 4 cut(s) 80, 136, 410, 904
BceAI ACGGC 1 cut(s) 513
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 4 cut(s) 580, 640, 764, 833
BfaI CTAG 5 cut(s) 311, 360, 393, 402, 933
BfmI CTRYAG 1 cut(s) 364
BisI GCNGC 4 cut(s) 510, 602, 605, 833
BlsI GCNGC 4 cut(s) 511, 603, 606, 834
BmcAI AGTACT 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 753
BmeT110I CYCGRG 1 cut(s) 890
BmgT120I GGNCC 3 cut(s) 957, 992, 993
BmiI GGNNCC 1 cut(s) 994
BmrFI CCNGG 1 cut(s) 753
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 3 cut(s) 60, 629, 801
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 2 cut(s) 545, 917
BplI GAGNNNNNCTC 2 cut(s) 663, 695
BpmI CTGGAG 1 cut(s) 453
Bpu10I CCTNAGC 2 cut(s) 270, 780
BpuMI CCSGG 1 cut(s) 753
BsaHI GRCGYC 1 cut(s) 773
BsaJI CCNNGG 2 cut(s) 543, 901
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 747, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 640
Bse118I RCCGGY 1 cut(s) 775
Bse1I ACTGG 2 cut(s) 203, 634
BseDI CCNNGG 2 cut(s) 543, 901
BseGI GGATG 2 cut(s) 51, 620
BseLI CCNNNNNNNGG 2 cut(s) 407, 640
BseMII CTCAG 2 cut(s) 284, 771
BseNI ACTGG 2 cut(s) 203, 634
BseRI GAGGAG 2 cut(s) 782, 934
BseSI GKGCMC 1 cut(s) 996
BseX3I CGGCCG 2 cut(s) 602, 830
BseXI GCAGC 1 cut(s) 496
BsgI GTGCAG 1 cut(s) 554
Bsh1285I CGRYCG 3 cut(s) 605, 618, 833
BshFI GGCC 5 cut(s) 604, 633, 832, 959, 994
BsiEI CGRYCG 3 cut(s) 605, 618, 833
BsiHKCI CYCGRG 1 cut(s) 890
BsiSI CCGG 4 cut(s) 700, 753, 776, 836
BslI CCNNNNNNNGG 2 cut(s) 407, 640
BsmAI GTCTC 4 cut(s) 580, 640, 764, 833
BsmBI CGTCTC 2 cut(s) 764, 833
BsnI GGCC 5 cut(s) 604, 633, 832, 959, 994
BsoBI CYCGRG 1 cut(s) 890
Bsp120I GGGCCC 1 cut(s) 992
Bsp1286I GDGCHC 2 cut(s) 897, 996
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 6 cut(s) 277, 385, 610, 615, 732, 798
BspACI CCGC 5 cut(s) 452, 601, 605, 814, 833
BspANI GGCC 5 cut(s) 604, 633, 832, 959, 994
BspCNI CTCAG 2 cut(s) 283, 772
BspLI GGNNCC 1 cut(s) 994
BspPI GGATC 2 cut(s) 605, 740
BspQI GCTCTTC 2 cut(s) 87, 467
BsrFI RCCGGY 1 cut(s) 775
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 2 cut(s) 203, 634
BssAI RCCGGY 1 cut(s) 775
BssECI CCNNGG 2 cut(s) 543, 901
BssMI GATC 6 cut(s) 277, 385, 610, 615, 732, 798
BssNI GRCGYC 1 cut(s) 773
BssT1I CCWWGG 2 cut(s) 543, 901
Bst4CI ACNGT 5 cut(s) 34, 79, 487, 532, 651
Bst6I CTCTTC 2 cut(s) 87, 467
BstACI GRCGYC 1 cut(s) 773
BstAUI TGTACA 1 cut(s) 165
BstC8I GCNNGC 4 cut(s) 293, 777, 789, 793
BstDEI CTNAG 4 cut(s) 270, 287, 780, 885
BstF5I GGATG 2 cut(s) 51, 620
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 6 cut(s) 280, 388, 613, 618, 735, 801
BstMAI GTCTC 4 cut(s) 580, 640, 764, 833
BstMBI GATC 6 cut(s) 277, 385, 610, 615, 732, 798
BstMCI CGRYCG 3 cut(s) 605, 618, 833
BstMWI GCNNNNNNNGC 4 cut(s) 506, 515, 860, 991
BstNSI RCATGY 3 cut(s) 236, 593, 658
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 364
BstSLI GKGCMC 1 cut(s) 996
BstV1I GCAGC 1 cut(s) 496
BstV2I GAAGAC 2 cut(s) 545, 917
BstX2I RGATCY 2 cut(s) 610, 732
BstXI CCANNNNNNTGG 1 cut(s) 135
BstYI RGATCY 2 cut(s) 610, 732
BstZI CGGCCG 2 cut(s) 602, 830
BsuRI GGCC 5 cut(s) 604, 633, 832, 959, 994
BtsCI GGATG 2 cut(s) 51, 620
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 4 cut(s) 293, 777, 789, 793
CciNI GCGGCCGC 1 cut(s) 602
CfoI GCGC 1 cut(s) 787
Cfr10I RCCGGY 1 cut(s) 775
Cfr13I GGNCC 3 cut(s) 957, 992, 993
CseI GACGC 1 cut(s) 781
Csp6I GTAC 5 cut(s) 113, 166, 221, 314, 652
CviAII CATG 5 cut(s) 233, 343, 590, 655, 760
CviQI GTAC 5 cut(s) 113, 166, 221, 314, 652
DdeI CTNAG 4 cut(s) 270, 287, 780, 885
DpnI GATC 6 cut(s) 279, 387, 612, 617, 734, 800
DpnII GATC 6 cut(s) 277, 385, 610, 615, 732, 798
EaeI YGGCCR 3 cut(s) 602, 631, 830
EagI CGGCCG 2 cut(s) 602, 830
Eam1104I CTCTTC 2 cut(s) 87, 467
EarI CTCTTC 2 cut(s) 87, 467
EclXI CGGCCG 2 cut(s) 602, 830
Eco130I CCWWGG 2 cut(s) 543, 901
Eco24I GRGCYC 2 cut(s) 897, 996
Eco52I CGGCCG 2 cut(s) 602, 830
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 890
EcoO109I RGGNCCY 1 cut(s) 993
EcoT14I CCWWGG 2 cut(s) 543, 901
EcoT38I GRGCYC 2 cut(s) 897, 996
ErhI CCWWGG 2 cut(s) 543, 901
Esp3I CGTCTC 2 cut(s) 764, 833
FaeI CATG 5 cut(s) 236, 346, 593, 658, 763
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FatI CATG 5 cut(s) 232, 342, 589, 654, 759
Fnu4HI GCNGC 4 cut(s) 510, 602, 605, 833
FokI GGATG 2 cut(s) 38, 607
FriOI GRGCYC 2 cut(s) 897, 996
Fsp4HI GCNGC 4 cut(s) 510, 602, 605, 833
FspBI CTAG 5 cut(s) 311, 360, 393, 402, 933
GlaI GCGC 1 cut(s) 786
GluI GCNGC 4 cut(s) 510, 602, 605, 833
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 5 cut(s) 604, 633, 832, 959, 994
HapII CCGG 4 cut(s) 700, 753, 776, 836
HgaI GACGC 1 cut(s) 781
HhaI GCGC 1 cut(s) 787
Hin1I GRCGYC 1 cut(s) 773
Hin1II CATG 5 cut(s) 236, 346, 593, 658, 763
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HindIII AAGCTT 2 cut(s) 293, 793
HinfI GANTC 4 cut(s) 40, 381, 723, 922
HpaII CCGG 4 cut(s) 700, 753, 776, 836
HphI GGTGA 6 cut(s) 425, 454, 466, 536, 565, 655
Hpy166II GTNNAC 2 cut(s) 166, 168
Hpy188I TCNGA 2 cut(s) 39, 615
Hpy188III TCNNGA 2 cut(s) 83, 469
Hpy8I GTNNAC 2 cut(s) 166, 168
HpyAV CCTTC 5 cut(s) 199, 433, 544, 844, 970
HpyCH4III ACNGT 5 cut(s) 34, 79, 487, 532, 651
HpyCH4V TGCA 3 cut(s) 51, 71, 535
HpyF10VI GCNNNNNNNGC 4 cut(s) 506, 515, 860, 991
HpyF3I CTNAG 4 cut(s) 270, 287, 780, 885
Hsp92I GRCGYC 1 cut(s) 773
Hsp92II CATG 5 cut(s) 236, 346, 593, 658, 763
HspAI GCGC 1 cut(s) 785
KroI GCCGGC 1 cut(s) 775
KroNI GCCGGC 1 cut(s) 777
Kzo9I GATC 6 cut(s) 277, 385, 610, 615, 732, 798
LguI GCTCTTC 2 cut(s) 87, 467
LmnI GCTCC 3 cut(s) 428, 561, 684
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 3 cut(s) 60, 629, 801
MaeI CTAG 5 cut(s) 311, 360, 393, 402, 933
MaeIII GTNAC 1 cut(s) 187
MalI GATC 6 cut(s) 279, 387, 612, 617, 734, 800
MboI GATC 6 cut(s) 277, 385, 610, 615, 732, 798
MflI RGATCY 2 cut(s) 610, 732
MhlI GDGCHC 2 cut(s) 897, 996
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 4 cut(s) 21, 117, 253, 405
MluNI TGGCCA 1 cut(s) 633
MlyI GAGTC 3 cut(s) 390, 732, 931
MmeI TCCRAC 1 cut(s) 696
Mox20I TGGCCA 1 cut(s) 633
MroNI GCCGGC 1 cut(s) 775
MroXI GAANNNNTTC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 633
MslI CAYNNNNRTG 1 cut(s) 133
Msp20I TGGCCA 1 cut(s) 633
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 4 cut(s) 700, 753, 776, 836
MspR9I CCNGG 1 cut(s) 753
MwoI GCNNNNNNNGC 4 cut(s) 506, 515, 860, 991
NaeI GCCGGC 1 cut(s) 777
NciI CCSGG 1 cut(s) 753
NdeII GATC 6 cut(s) 277, 385, 610, 615, 732, 798
NgoMIV GCCGGC 1 cut(s) 775
NlaIII CATG 5 cut(s) 236, 346, 593, 658, 763
NlaIV GGNNCC 1 cut(s) 994
NmeAIII GCCGAG 1 cut(s) 641
NotI GCGGCCGC 1 cut(s) 602
NspI RCATGY 3 cut(s) 236, 593, 658
PciI ACATGT 1 cut(s) 654
PciSI GCTCTTC 2 cut(s) 87, 467
PdiI GCCGGC 1 cut(s) 777
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 640
PfoI TCCNGGA 1 cut(s) 751
PkrI GCNGC 4 cut(s) 511, 603, 606, 834
Ple19I CGATCG 1 cut(s) 618
PleI GAGTC 3 cut(s) 389, 731, 930
PpsI GAGTC 3 cut(s) 389, 731, 930
PscI ACATGT 1 cut(s) 654
PspN4I GGNNCC 1 cut(s) 994
PspOMI GGGCCC 1 cut(s) 992
PspPI GGNCC 3 cut(s) 957, 992, 993
PsuI RGATCY 2 cut(s) 610, 732
PvuI CGATCG 1 cut(s) 618
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 5 cut(s) 114, 167, 222, 315, 653
RsaNI GTAC 5 cut(s) 113, 166, 221, 314, 652
RseI CAYNNNNRTG 1 cut(s) 133
SapI GCTCTTC 2 cut(s) 87, 467
SatI GCNGC 4 cut(s) 510, 602, 605, 833
Sau3AI GATC 6 cut(s) 277, 385, 610, 615, 732, 798
Sau96I GGNCC 3 cut(s) 957, 992, 993
ScaI AGTACT 1 cut(s) 315
SchI GAGTC 3 cut(s) 390, 732, 931
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 2 cut(s) 897, 996
SfaNI GCATC 3 cut(s) 60, 629, 801
SfcI CTRYAG 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 133
Sse9I AATT 4 cut(s) 21, 117, 253, 405
SsiI CCGC 5 cut(s) 452, 601, 605, 814, 833
SspI AATATT 1 cut(s) 942
SspMI CTAG 5 cut(s) 311, 360, 393, 402, 933
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 2 cut(s) 543, 901
TaaI ACNGT 5 cut(s) 34, 79, 487, 532, 651
TaqI TCGA 5 cut(s) 82, 276, 384, 765, 801
TasI AATT 4 cut(s) 21, 117, 253, 405
TatI WGTACW 3 cut(s) 165, 313, 651
TauI GCSGC 3 cut(s) 604, 607, 835
TfiI GAWTC 1 cut(s) 40
TscAI CASTG 1 cut(s) 634
TseI GCWGC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 331
TspGWI ACGGA 2 cut(s) 671, 857
TspRI CASTG 1 cut(s) 634
Van91I CCANNNNNTGG 1 cut(s) 640
XceI RCATGY 3 cut(s) 236, 593, 658
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 5 cut(s) 311, 360, 393, 402, 933
ZrmI AGTACT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.