Prupe.3G034800_v2.0.a1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014615
Physical Location & Seq
Reverse (-)
2546894 .. 2548350
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G034800.1

Sequence Viewer

Length: 486 bp
ATGAGCGGAGTAGCCGATTCGAGTGCTTTCAATGGGGATTTTGCAACAGCAGTGAACCACCTGCTCAATTTCCCTGAAACCATTGACAAGTTCATGTTCCCTTCTCGGGCTCACGAAACCAACAACGAGAACAAAGGAGCGGCTAGCATTCCAGTGGACATTTTGGACTCTCCCAAGGAGTATATATTTTTCTTGGACTTGCCTGGCTTGTCCAAATCTGATATTCAGGTAACAGTTGAAGATGAAAACACTCTGGTGATCCGAAGCAATGGGAAGAGGAAACGTGAAGATGGGGAGGAGGAAGGCTGCAAGTATCTGAGGCTTGAGAGGAGAGGACCCCAGAAGCTGTTGAGGAAGTTTAGGTTGCCCCAAAATGCGAATGTAGGAGCCATATCTGCCAAATGCGAAAATGGGGTTCTCTCTGTGGTGGTTGAGAAACTTCCTCCACCTCCCAAGCCCAAAACAGTTGAAGTTTCTATCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

162

Amino Acids

17.78

Weight (kDa)

6.16

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54050 AT1G54050
fragaria_vesca FvH4_6g35450
malus_domestica MD17G1151000.v1.1
prunus_persica Prupe.3G034800_v2.0.a1
pyrus_communis pycom17g14430
rosa_chinensis RchiOBHm_Chr2g0147001
rosa_laevigata RLG00000020237
rosa_multiflora Rmu_co8216844.1_g000001
rosa_roxburghii Rroxscaffold_2G00099770
rosa_rugosa Rorug02G0397900
rosa_samantha Rh2AG454900 Rh2BG467400 Rh2CG442300 Rh2DG476400
rosa_wichuraiana Rw2G037110 Rw2G037210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 69
AccBSI CCGCTC 2 cut(s) 6, 140
AciI CCGC 2 cut(s) 6, 140
AclWI GGATC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 3 cut(s) 31, 239, 470
AjnI CCWGG 1 cut(s) 202
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 1 cut(s) 346
AluI AGCT 1 cut(s) 346
AlwI GGATC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 346
Ama87I CYCGRG 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 268
AsuNHI GCTAGC 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 105
AvaII GGWCC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 1 cut(s) 204
BfaI CTAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 2 cut(s) 141, 307
BlsI GCNGC 2 cut(s) 142, 308
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 2 cut(s) 337, 388
BmrFI CCNGG 1 cut(s) 204
BmtI GCTAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 311, 343
BseXI GCAGC 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 106
BsmI GAATGC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 258
BspACI CCGC 2 cut(s) 6, 140
BspCNI CTCAG 1 cut(s) 309
BspLI GGNNCC 2 cut(s) 337, 388
BspMI ACCTGC 1 cut(s) 69
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 1 cut(s) 253
BsrBI CCGCTC 2 cut(s) 6, 140
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 235, 466
Bst6I CTCTTC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 317
BstKTI GATC 1 cut(s) 261
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 293
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 159
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 335
CviAII CATG 1 cut(s) 94
CviJI RGCY 9 cut(s) 14, 110, 143, 207, 306, 322, 346, 389, 457
CviKI_1 RGCY 9 cut(s) 14, 110, 143, 207, 306, 322, 346, 389, 457
DdeI CTNAG 1 cut(s) 317
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 97
FaiI YATR 4 cut(s) 95, 183, 185, 392
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 141, 307
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 141, 307
FspBI CTAG 1 cut(s) 144
GluI GCNGC 2 cut(s) 141, 307
Hin1II CATG 1 cut(s) 97
HinfI GANTC 2 cut(s) 17, 167
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 55, 157
Hpy188I TCNGA 3 cut(s) 220, 263, 318
Hpy188III TCNNGA 2 cut(s) 113, 483
Hpy8I GTNNAC 2 cut(s) 55, 157
HpyAV CCTTC 2 cut(s) 111, 296
HpyCH4III ACNGT 2 cut(s) 235, 466
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 44, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 2 cut(s) 137, 386
LpnPI CCDG 8 cut(s) 74, 87, 165, 189, 212, 216, 239, 353
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 260
MbiI CCGCTC 2 cut(s) 6, 140
MboI GATC 1 cut(s) 258
MboII GAAGA 3 cut(s) 251, 286, 299
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 1 cut(s) 67
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 9 cut(s) 270, 289, 292, 312, 321, 326, 345, 453, 459
MslI CAYNNNNRTG 2 cut(s) 152, 254
MspR9I CCNGG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 147
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeII GATC 1 cut(s) 258
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 2 cut(s) 337, 388
OliI CACNNNNGTG 1 cut(s) 254
PaqCI CACCTGC 1 cut(s) 69
PctI GAATGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 142, 308
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PpuMI RGGWCCY 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 337, 388
PspPI GGNCC 1 cut(s) 335
PspPPI RGGWCCY 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 152, 254
SatI GCNGC 2 cut(s) 141, 307
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 1 cut(s) 112
SetI ASST 6 cut(s) 63, 231, 286, 348, 365, 451
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 2 cut(s) 152, 254
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 1 cut(s) 67
SsiI CCGC 2 cut(s) 6, 140
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 235, 466
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 67
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 2 cut(s) 57, 159
TseI GCWGC 1 cut(s) 306
TspDTI ATGAA 2 cut(s) 82, 258
TspRI CASTG 2 cut(s) 57, 159
VpaK11BI GGWCC 1 cut(s) 335
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.