Rorug02G0397900

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014615
Physical Location & Seq
Reverse (-)
50809261 .. 50810287
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0397900.1

Sequence Viewer

Length: 543 bp
ATGGCTTTGGGAAAGAATTGCCGGAGTAGTTCACTGAAATGCAGCTTTTCGTCCGGAGGAGGAGGAGAAGAAGGGTTTGTTCGAGCTTTGGGGAGGAAGAGGATAGAAATCCCGGATGCGGGCCCCAAGACTCCATTGAAGAAGCAGAGGAGCGAGTGTTTCGCTTTTGATTTCGATTTCGAGGGTGAAAGTTCTAAACTTGAAGCTCTGCCTCGGGAGATTCTGATTAAGATTCTGTGTGGAGTTGATCATGAGGATCTTAAACAGCTTTTCAGTGTATCTAAGGCGATTAGAGAAGCGACCCTTATTGCGAAACAGTTGCATTTTGTTTACAGCACACCAAGAAAGATTCCAGCTTTTCGAACCAAGATTGATTTTTCGGAGTCAAATGATGAATTGGATGAGATTGAAGCTCCGAATGCTCCGAGGCTGCATAGGGAGCTTCCGAGCCGGAAAAAGCTTGAAGAGATATCTGTTAACTTATTGGATTCATTGGAGGAAGGAATCAGAAGAGGGCTTTTCATGGATGAAGATGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

180

Amino Acids

20.27

Weight (kDa)

5.59

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014615)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54050 AT1G54050
fragaria_vesca FvH4_6g35450
malus_domestica MD17G1151000.v1.1
prunus_persica Prupe.3G034800_v2.0.a1
pyrus_communis pycom17g14430
rosa_chinensis RchiOBHm_Chr2g0147001
rosa_laevigata RLG00000020237
rosa_multiflora Rmu_co8216844.1_g000001
rosa_roxburghii Rroxscaffold_2G00099770
rosa_rugosa Rorug02G0397900
rosa_samantha Rh2AG454900 Rh2BG467400 Rh2CG442300 Rh2DG476400
rosa_wichuraiana Rw2G037110 Rw2G037210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 118, 119
AgsI TTSAA 4 cut(s) 139, 203, 410, 464
AluBI AGCT 8 cut(s) 45, 86, 206, 268, 356, 413, 442, 460
AluI AGCT 8 cut(s) 45, 86, 206, 268, 356, 413, 442, 460
AlwI GGATC 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 213
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 1 cut(s) 121
ApaI GGGCCC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 42, 430
AspS9I GGNCC 2 cut(s) 121, 122
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 54, 417
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 1 cut(s) 113
BisI GCNGC 2 cut(s) 43, 431
BlsI GCNGC 2 cut(s) 44, 432
Bme1390I CCNGG 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 121, 122
BmiI GGNNCC 2 cut(s) 123, 124
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 361
BpuMI CCSGG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 212, 425
BsaWI WCCGGW 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 119
Bse8I GATNNNNATC 1 cut(s) 107
BseAI TCCGGA 1 cut(s) 53
BseDI CCNNGG 2 cut(s) 212, 425
BseGI GGATG 3 cut(s) 121, 406, 532
BseJI GATNNNNATC 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 118, 119
BseRI GAGGAG 4 cut(s) 72, 75, 78, 163
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 2 cut(s) 54, 417
BshFI GGCC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 4 cut(s) 22, 54, 113, 451
BslI CCNNNNNNNGG 2 cut(s) 118, 119
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 361
Bsp120I GGGCCC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 125
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 2 cut(s) 247, 256
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 123
BspEI TCCGGA 1 cut(s) 53
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 123, 124
BspPI GGATC 1 cut(s) 264
BspT104I TTCGAA 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 212, 425
BssMI GATC 2 cut(s) 247, 256
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 3 cut(s) 92, 459, 505
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 3 cut(s) 121, 406, 532
BstKTI GATC 2 cut(s) 250, 259
BstMBI GATC 2 cut(s) 247, 256
BstMWI GCNNNNNNNGC 2 cut(s) 419, 439
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 54, 417
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 3 cut(s) 121, 406, 532
BtsIMutI CAGTG 2 cut(s) 32, 280
Cac8I GCNNGC 1 cut(s) 121
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 121, 122
CviAII CATG 2 cut(s) 251, 523
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 249, 258
DpnII GATC 2 cut(s) 247, 256
Eam1104I CTCTTC 3 cut(s) 92, 459, 505
EarI CTCTTC 3 cut(s) 92, 459, 505
Eco24I GRGCYC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 122
EcoRV GATATC 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 2 cut(s) 254, 526
FaiI YATR 3 cut(s) 252, 435, 524
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 2 cut(s) 250, 522
FauI CCCGC 1 cut(s) 112
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 43, 431
FokI GGATG 3 cut(s) 128, 413, 539
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 43, 431
GluI GCNGC 2 cut(s) 43, 431
HaeIII GGCC 1 cut(s) 123
HapII CCGG 4 cut(s) 22, 54, 113, 451
Hin1II CATG 2 cut(s) 254, 526
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 7 cut(s) 130, 220, 232, 349, 383, 488, 504
HpaI GTTAAC 1 cut(s) 478
HpaII CCGG 4 cut(s) 22, 54, 113, 451
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 3 cut(s) 32, 331, 478
Hpy188I TCNGA 6 cut(s) 225, 382, 417, 426, 447, 509
Hpy188III TCNNGA 3 cut(s) 54, 215, 251
Hpy8I GTNNAC 3 cut(s) 32, 331, 478
HpyAV CCTTC 2 cut(s) 65, 494
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4V TGCA 3 cut(s) 42, 322, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 439
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 2 cut(s) 254, 526
Kpn2I TCCGGA 1 cut(s) 53
Ksp22I TGATCA 1 cut(s) 247
KspAI GTTAAC 1 cut(s) 478
Kzo9I GATC 2 cut(s) 247, 256
LmnI GCTCC 4 cut(s) 150, 418, 427, 439
LpnPI CCDG 5 cut(s) 35, 67, 126, 366, 464
Lsp1109I GCAGC 2 cut(s) 54, 417
LweI GCATC 1 cut(s) 106
MalI GATC 2 cut(s) 249, 258
MboI GATC 2 cut(s) 247, 256
MboII GAAGA 6 cut(s) 80, 109, 151, 476, 522, 542
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 2 cut(s) 16, 395
MlyI GAGTC 2 cut(s) 124, 392
MroI TCCGGA 1 cut(s) 53
MseI TTAA 3 cut(s) 228, 261, 477
MslI CAYNNNNRTG 1 cut(s) 37
MspI CCGG 4 cut(s) 22, 54, 113, 451
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 424
MwoI GCNNNNNNNGC 2 cut(s) 419, 439
NciI CCSGG 1 cut(s) 113
NdeII GATC 2 cut(s) 247, 256
NlaIII CATG 2 cut(s) 254, 526
NlaIV GGNNCC 2 cut(s) 123, 124
NspV TTCGAA 1 cut(s) 361
PagI TCATGA 1 cut(s) 250
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 5 cut(s) 220, 232, 349, 488, 504
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 2 cut(s) 44, 432
PleI GAGTC 2 cut(s) 124, 391
PpsI GAGTC 2 cut(s) 124, 391
PspN4I GGNNCC 2 cut(s) 123, 124
PspOMI GGGCCC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 121, 122
PsuI RGATCY 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 37
SaqAI TTAA 3 cut(s) 228, 261, 477
SatI GCNGC 2 cut(s) 43, 431
Sau3AI GATC 2 cut(s) 247, 256
Sau96I GGNCC 2 cut(s) 121, 122
SchI GAGTC 2 cut(s) 124, 392
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 125
SetI ASST 8 cut(s) 47, 88, 208, 270, 358, 415, 444, 462
SfaNI GCATC 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 37
Sse9I AATT 2 cut(s) 16, 395
SsiI CCGC 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 318
TaqI TCGA 4 cut(s) 82, 174, 180, 361
TasI AATT 2 cut(s) 16, 395
TfiI GAWTC 5 cut(s) 220, 232, 349, 488, 504
Tru1I TTAA 3 cut(s) 228, 261, 477
Tru9I TTAA 3 cut(s) 228, 261, 477
TscAI CASTG 2 cut(s) 39, 280
TseI GCWGC 2 cut(s) 42, 430
TspDTI ATGAA 4 cut(s) 408, 480, 511, 543
TspRI CASTG 2 cut(s) 39, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.