Prupe.3G070100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016724
Physical Location & Seq
Forward (+)
5045541 .. 5046910
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G070100.1

Sequence Viewer

Length: 222 bp
ATGTCTCTAGTGCATTTGATGCTTGGATCATTGGTGAGGCTTGTGACAGCACTGATAGCTCGGCCGGCAGCCACCATCACAACCTTGCTCTACCACAGTGATCTTCTCCCTCGAAATTTCGACTCAGAGCGATTACGTCGATTGGTTCGACATGAGTACCTTCTTGTTCAAGAAAATTGCCTTTTTAGTTCTCTCATCAACGTTTTGAGATGCTTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.51

Weight (kDa)

9.49

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04841
malus_domestica MD02G1047700.v1.1 MD15G1186200.v1.1
prunus_persica Prupe.3G070100_v2.0.a1 Prupe.7G230500_v2.0.a1
pyrus_communis pycom02g03990 pycom09g12930 pycom15g16690
rosa_chinensis RchiOBHm_Chr2g0090511
rosa_roxburghii Rroxscaffold_2G00151070
rosa_rugosa Rorug02G0008700 Rorug02G0349200
rosa_samantha Rh2BG410600 Rh2DG417800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 201
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 34
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 46
BaeI ACNNNNGTAYC 2 cut(s) 140, 173
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 8
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmsI GCATC 2 cut(s) 9, 200
Bse118I RCCGGY 1 cut(s) 64
BseMII CTCAG 1 cut(s) 138
BseX3I CGGCCG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 26, 100
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 137
BspPI GGATC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssMI GATC 2 cut(s) 26, 100
Bst4CI ACNGT 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 124
BstKTI GATC 2 cut(s) 29, 103
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 26, 100
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 3 cut(s) 19, 56, 65
BstV1I GCAGC 1 cut(s) 80
BstZI CGGCCG 1 cut(s) 62
BsuRI GGCC 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 50, 103
Cac8I GCNNGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 64
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 152
CviJI RGCY 4 cut(s) 40, 59, 64, 71
CviKI_1 RGCY 4 cut(s) 40, 59, 64, 71
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 124
DpnI GATC 2 cut(s) 28, 102
DpnII GATC 2 cut(s) 26, 100
EaeI YGGCCR 1 cut(s) 62
EagI CGGCCG 1 cut(s) 62
EclXI CGGCCG 1 cut(s) 62
Eco52I CGGCCG 1 cut(s) 62
FaeI CATG 1 cut(s) 155
FaiI YATR 1 cut(s) 153
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 8
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 65
Hin1II CATG 1 cut(s) 155
HinfI GANTC 1 cut(s) 122
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 170
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 2 cut(s) 136, 201
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 56, 65
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 2 cut(s) 136, 201
Hsp92II CATG 1 cut(s) 155
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 26, 100
LpnPI CCDG 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 2 cut(s) 9, 200
MaeI CTAG 1 cut(s) 8
MaeII ACGT 2 cut(s) 136, 201
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 28, 102
MboI GATC 2 cut(s) 26, 100
MboII GAAGA 1 cut(s) 95
MluCI AATT 2 cut(s) 115, 175
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 2 cut(s) 30, 120
MroNI GCCGGC 1 cut(s) 64
MspI CCGG 1 cut(s) 65
MwoI GCNNNNNNNGC 3 cut(s) 19, 56, 65
NaeI GCCGGC 1 cut(s) 66
NdeII GATC 2 cut(s) 26, 100
NgoMIV GCCGGC 1 cut(s) 64
NlaIII CATG 1 cut(s) 155
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp1406I AACGTT 1 cut(s) 201
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 26, 100
SchI GAGTC 1 cut(s) 116
SetI ASST 5 cut(s) 61, 86, 139, 162, 204
SfaNI GCATC 2 cut(s) 9, 200
Sse9I AATT 2 cut(s) 115, 175
SspMI CTAG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 2 cut(s) 139, 204
TaqI TCGA 4 cut(s) 112, 120, 139, 148
TasI AATT 2 cut(s) 115, 175
TscAI CASTG 2 cut(s) 57, 103
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 43
TspRI CASTG 2 cut(s) 57, 103
XapI RAATTY 1 cut(s) 115
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.