Rorug02G0008700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016724
Physical Location & Seq
Reverse (-)
721682 .. 723096
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0008700.1

Sequence Viewer

Length: 993 bp
ATGAAGCATAAGACAAACCGAGCTCTCTCAATTACACACACCAAACTCTCAAAAATGGACCGAACCAATAATGAAGAAGAACCACCAGTGACCTCCGACTCCGACTCCGACTCCGACTGGGCCGGGTTGACCTACGAGTGCCTCGCCAACATCCTCGCCCGGCTTCCCTTGGAGCACCGATGGCGTGCGATGCTCCTCTGCAAATCATGGCTGCTCGCCTGCAAGGACCCGCATCTCAACTCGCGCTTCGTCCTCGAGCCCAAGCCCGAGTACGGGTCGGCTCAGTGGTGGGCCCCCGAGTTGGGGAGAAGGGTCGATTCCATTCTCCGATCTGTTGCTGAATGGAGCGAGGGGTCGCTTAGGGAGATTCGCACCCGGAACTGCTCTAATGACTCTCTCCATTTCGTCGCCCAAAGGTGCCCAAACCTTGAGGTTCTTTCGATCAAGTGCTGCCCGAATGTGACTGATGCATCCATGGCTGACATAGCGTTTCGGTGCACCATGATTAAGGAACTTGACATCAGCTATTGCCATGAAATATCTCACGAGTCTCTGGTGTTGATTGGGAAGAATTGCCCTAATCTCACAATTGTTAAACGGAATATGTTGAATTTGCTAGATCCTTCTGAACACGCTGGGATTGTTCCTGAGGAGTATTTAAAAACTTGCCCTCAAGATGGAAATTCAGAAGCTGATGCAATTGGCAAATCTATGCCGAATCTCAAGCACCTTGAACTAAGGTTCTCCAAGGTAACGGCTAAAGGCCTTGGTTTGATATCTGCAGGGTGTCTGAAACTTGAGTACTTGGATGTGTTTGGGTGTGTAAACTTGAATAGTCGTGATATCAACAATGCAACATCCGAGCTGAAGAACTTGAAGGAGATTAAAAAGCCAAATTTCTACATCCCTAGGTCGGTTTTCCATACGGAGGAGAGGTATGGACATTGGAGGCTGTATGATGAGAGATTTCAAACAGATATTTTCAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

37.74

Weight (kDa)

6.83

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 42 - 80 1.9e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04841
malus_domestica MD02G1047700.v1.1 MD15G1186200.v1.1
prunus_persica Prupe.3G070100_v2.0.a1 Prupe.7G230500_v2.0.a1
pyrus_communis pycom02g03990 pycom09g12930 pycom15g16690
rosa_chinensis RchiOBHm_Chr2g0090511
rosa_roxburghii Rroxscaffold_2G00151070
rosa_rugosa Rorug02G0008700 Rorug02G0349200
rosa_samantha Rh2BG410600 Rh2DG417800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 417
AccII CGCG 1 cut(s) 244
AciI CCGC 1 cut(s) 230
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 3 cut(s) 610, 682, 895
AcuI CTGAAG 1 cut(s) 887
AfaI GTAC 2 cut(s) 272, 803
AfiI CCNNNNNNNGG 8 cut(s) 272, 273, 301, 302, 303, 677, 913, 928
AgsI TTSAA 5 cut(s) 610, 734, 832, 877, 971
AluBI AGCT 4 cut(s) 23, 525, 692, 865
AluI AGCT 4 cut(s) 23, 525, 692, 865
Alw21I GWGCWC 3 cut(s) 25, 177, 500
Alw26I GTCTC 1 cut(s) 555
Alw44I GTGCAC 1 cut(s) 496
AlwI GGATC 1 cut(s) 614
AlwNI CAGNNNCTG 1 cut(s) 692
Ama87I CYCGRG 3 cut(s) 254, 266, 296
AoxI GGCC 3 cut(s) 120, 291, 763
ApaI GGGCCC 1 cut(s) 295
ApaLI GTGCAC 1 cut(s) 496
ApeKI GCWGC 2 cut(s) 211, 450
ApoI RAATTY 3 cut(s) 610, 682, 895
AspA2I CCTAGG 1 cut(s) 908
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 5 cut(s) 58, 120, 226, 291, 292
AsuC2I CCSGG 3 cut(s) 124, 160, 376
AvaI CYCGRG 3 cut(s) 254, 266, 296
AvaII GGWCC 2 cut(s) 58, 226
AvrII CCTAGG 1 cut(s) 908
AxyI CCTNAGG 1 cut(s) 648
BaeGI GKGCMC 3 cut(s) 295, 422, 500
BanI GGYRCC 1 cut(s) 417
BanII GRGCYC 3 cut(s) 25, 261, 295
BauI CACGAG 1 cut(s) 545
Bbv12I GWGCWC 3 cut(s) 25, 177, 500
BbvI GCAGC 2 cut(s) 198, 437
BccI CCATC 2 cut(s) 174, 671
BceAI ACGGC 1 cut(s) 771
BcnI CCSGG 3 cut(s) 124, 160, 376
BcoDI GTCTC 1 cut(s) 555
BfaI CTAG 2 cut(s) 617, 909
BfmI CTRYAG 1 cut(s) 780
BisI GCNGC 2 cut(s) 212, 451
BlnI CCTAGG 1 cut(s) 908
BlsI GCNGC 2 cut(s) 213, 452
BmcAI AGTACT 1 cut(s) 803
Bme1390I CCNGG 3 cut(s) 124, 160, 376
Bme18I GGWCC 2 cut(s) 58, 226
BmeT110I CYCGRG 3 cut(s) 254, 266, 296
BmgT120I GGNCC 5 cut(s) 58, 120, 226, 291, 292
BmiI GGNNCC 4 cut(s) 228, 293, 294, 419
BmrFI CCNGG 3 cut(s) 124, 160, 376
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 5 cut(s) 180, 241, 457, 479, 685
BmuI ACTGGG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 359
BpuEI CTTGAG 4 cut(s) 449, 657, 707, 818
BpuMI CCSGG 3 cut(s) 124, 160, 376
BsaJI CCNNGG 5 cut(s) 168, 474, 747, 766, 908
BsaXI ACNNNNNCTCC 6 cut(s) 89, 95, 119, 125, 920, 950
Bsc4I CCNNNNNNNGG 8 cut(s) 272, 273, 301, 302, 303, 677, 913, 928
Bse1I ACTGG 2 cut(s) 86, 122
Bse21I CCTNAGG 1 cut(s) 648
BseDI CCNNGG 5 cut(s) 168, 474, 747, 766, 908
BseGI GGATG 5 cut(s) 150, 470, 814, 857, 903
BseLI CCNNNNNNNGG 8 cut(s) 272, 273, 301, 302, 303, 677, 913, 928
BseMII CTCAG 2 cut(s) 296, 639
BseNI ACTGG 2 cut(s) 86, 122
BseRI GAGGAG 3 cut(s) 185, 665, 944
BseSI GKGCMC 3 cut(s) 295, 422, 500
BseXI GCAGC 2 cut(s) 198, 437
BseYI CCCAGC 1 cut(s) 635
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 3 cut(s) 122, 293, 765
BshNI GGYRCC 1 cut(s) 417
BsiHKAI GWGCWC 3 cut(s) 25, 177, 500
BsiHKCI CYCGRG 3 cut(s) 254, 266, 296
BsiSI CCGG 3 cut(s) 123, 160, 376
BslI CCNNNNNNNGG 8 cut(s) 272, 273, 301, 302, 303, 677, 913, 928
BsmAI GTCTC 1 cut(s) 555
BsnI GGCC 3 cut(s) 122, 293, 765
BsoBI CYCGRG 3 cut(s) 254, 266, 296
Bsp120I GGGCCC 1 cut(s) 291
Bsp1286I GDGCHC 6 cut(s) 25, 177, 261, 295, 422, 500
Bsp143I GATC 3 cut(s) 329, 441, 619
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 1 cut(s) 230
BspANI GGCC 3 cut(s) 122, 293, 765
BspCNI CTCAG 2 cut(s) 295, 640
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 4 cut(s) 228, 293, 294, 419
BspMAI CTGCAG 1 cut(s) 784
BspPI GGATC 1 cut(s) 614
BspT107I GGYRCC 1 cut(s) 417
BsrI ACTGG 2 cut(s) 86, 122
BssECI CCNNGG 5 cut(s) 168, 474, 747, 766, 908
BssMI GATC 3 cut(s) 329, 441, 619
BssSI CACGAG 1 cut(s) 545
BssT1I CCWWGG 5 cut(s) 168, 474, 747, 766, 908
Bst2BI CACGAG 1 cut(s) 545
BstC8I GCNNGC 3 cut(s) 186, 216, 220
BstDEI CTNAG 4 cut(s) 282, 359, 648, 737
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 5 cut(s) 150, 470, 814, 857, 903
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 3 cut(s) 332, 444, 622
BstMAI GTCTC 1 cut(s) 555
BstMBI GATC 3 cut(s) 329, 441, 619
BstMWI GCNNNNNNNGC 4 cut(s) 181, 190, 476, 485
BstSCI CCNGG 3 cut(s) 122, 158, 374
BstSFI CTRYAG 1 cut(s) 780
BstSLI GKGCMC 3 cut(s) 295, 422, 500
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 198, 437
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
Bsu36I CCTNAGG 1 cut(s) 648
BsuRI GGCC 3 cut(s) 122, 293, 765
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 5 cut(s) 150, 470, 814, 857, 903
BtsIMutI CAGTG 2 cut(s) 93, 290
Cac8I GCNNGC 3 cut(s) 186, 216, 220
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 5 cut(s) 58, 120, 226, 291, 292
Csp6I GTAC 2 cut(s) 271, 802
CviAII CATG 4 cut(s) 207, 475, 502, 533
CviQI GTAC 2 cut(s) 271, 802
DdeI CTNAG 4 cut(s) 282, 359, 648, 737
DpnI GATC 3 cut(s) 331, 443, 621
DpnII GATC 3 cut(s) 329, 441, 619
DraI TTTAAA 1 cut(s) 660
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 5 cut(s) 168, 474, 747, 766, 908
Eco147I AGGCCT 1 cut(s) 765
Eco24I GRGCYC 3 cut(s) 25, 261, 295
Eco32I GATATC 2 cut(s) 777, 844
Eco47I GGWCC 2 cut(s) 58, 226
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 887
Eco81I CCTNAGG 1 cut(s) 648
Eco88I CYCGRG 3 cut(s) 254, 266, 296
EcoICRI GAGCTC 1 cut(s) 23
EcoO109I RGGNCCY 2 cut(s) 226, 292
EcoRV GATATC 2 cut(s) 777, 844
EcoT14I CCWWGG 5 cut(s) 168, 474, 747, 766, 908
EcoT22I ATGCAT 1 cut(s) 472
EcoT38I GRGCYC 3 cut(s) 25, 261, 295
ErhI CCWWGG 5 cut(s) 168, 474, 747, 766, 908
FaeI CATG 4 cut(s) 210, 478, 505, 536
FatI CATG 4 cut(s) 206, 474, 501, 532
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 212, 451
FokI GGATG 5 cut(s) 137, 457, 821, 844, 890
FriOI GRGCYC 3 cut(s) 25, 261, 295
Fsp4HI GCNGC 2 cut(s) 212, 451
FspBI CTAG 2 cut(s) 617, 909
GlaI GCGC 1 cut(s) 245
GluI GCNGC 2 cut(s) 212, 451
GsaI CCCAGC 1 cut(s) 639
HaeIII GGCC 3 cut(s) 122, 293, 765
HapII CCGG 3 cut(s) 123, 160, 376
HhaI GCGC 1 cut(s) 246
Hin1II CATG 4 cut(s) 210, 478, 505, 536
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 9 cut(s) 98, 104, 110, 317, 367, 392, 548, 718, 987
HpaII CCGG 3 cut(s) 123, 160, 376
Hpy166II GTNNAC 3 cut(s) 129, 498, 826
Hpy188III TCNNGA 4 cut(s) 545, 647, 674, 839
Hpy8I GTNNAC 3 cut(s) 129, 498, 826
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 3 cut(s) 303, 633, 871
HpyCH4V TGCA 7 cut(s) 201, 222, 470, 498, 698, 782, 854
HpyF10VI GCNNNNNNNGC 4 cut(s) 181, 190, 476, 485
HpyF3I CTNAG 4 cut(s) 282, 359, 648, 737
Hsp92II CATG 4 cut(s) 210, 478, 505, 536
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 3 cut(s) 329, 441, 619
LmnI GCTCC 3 cut(s) 172, 198, 345
Lsp1109I GCAGC 2 cut(s) 198, 437
LweI GCATC 5 cut(s) 180, 241, 457, 479, 685
MaeI CTAG 2 cut(s) 617, 909
MaeIII GTNAC 3 cut(s) 88, 460, 751
MalI GATC 3 cut(s) 331, 443, 621
MboI GATC 3 cut(s) 329, 441, 619
MboII GAAGA 4 cut(s) 86, 89, 580, 880
MfeI CAATTG 2 cut(s) 588, 699
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 6 cut(s) 25, 177, 261, 295, 422, 500
MluCI AATT 7 cut(s) 30, 571, 588, 610, 682, 699, 895
MlyI GAGTC 5 cut(s) 92, 98, 104, 386, 557
MmeI TCCRAC 4 cut(s) 120, 126, 132, 138
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 4 cut(s) 507, 594, 659, 885
MspI CCGG 3 cut(s) 123, 160, 376
MspR9I CCNGG 3 cut(s) 124, 160, 376
MunI CAATTG 2 cut(s) 588, 699
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 181, 190, 476, 485
NciI CCSGG 3 cut(s) 124, 160, 376
NcoI CCATGG 1 cut(s) 474
NdeII GATC 3 cut(s) 329, 441, 619
NlaIII CATG 4 cut(s) 210, 478, 505, 536
NlaIV GGNNCC 4 cut(s) 228, 293, 294, 419
NmuCI GTSAC 2 cut(s) 88, 460
NsiI ATGCAT 1 cut(s) 472
PaeR7I CTCGAG 1 cut(s) 254
PceI AGGCCT 1 cut(s) 765
PfeI GAWTC 4 cut(s) 317, 367, 718, 987
PkrI GCNGC 2 cut(s) 213, 452
PleI GAGTC 5 cut(s) 92, 98, 104, 386, 556
PpsI GAGTC 5 cut(s) 92, 98, 104, 386, 556
PpuMI RGGWCCY 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 226
PspFI CCCAGC 1 cut(s) 635
PspN4I GGNNCC 4 cut(s) 228, 293, 294, 419
PspOMI GGGCCC 1 cut(s) 291
PspPI GGNCC 5 cut(s) 58, 120, 226, 291, 292
PspPPI RGGWCCY 1 cut(s) 226
PspXI VCTCGAGB 1 cut(s) 254
PstI CTGCAG 1 cut(s) 784
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 1 cut(s) 619
RsaI GTAC 2 cut(s) 272, 803
RsaNI GTAC 2 cut(s) 271, 802
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 4 cut(s) 507, 594, 659, 885
SatI GCNGC 2 cut(s) 212, 451
Sau3AI GATC 3 cut(s) 329, 441, 619
Sau96I GGNCC 5 cut(s) 58, 120, 226, 291, 292
ScaI AGTACT 1 cut(s) 803
SchI GAGTC 5 cut(s) 92, 98, 104, 386, 557
ScrFI CCNGG 3 cut(s) 124, 160, 376
SduI GDGCHC 6 cut(s) 25, 177, 261, 295, 422, 500
SfaNI GCATC 5 cut(s) 180, 241, 457, 479, 685
SfcI CTRYAG 1 cut(s) 780
Sfr274I CTCGAG 1 cut(s) 254
SinI GGWCC 2 cut(s) 58, 226
SlaI CTCGAG 1 cut(s) 254
SmlI CTYRAG 5 cut(s) 254, 428, 672, 722, 797
SmoI CTYRAG 5 cut(s) 254, 428, 672, 722, 797
Sse9I AATT 7 cut(s) 30, 571, 588, 610, 682, 699, 895
SseBI AGGCCT 1 cut(s) 765
SsiI CCGC 1 cut(s) 230
SspMI CTAG 2 cut(s) 617, 909
SstI GAGCTC 1 cut(s) 25
StuI AGGCCT 1 cut(s) 765
StyD4I CCNGG 3 cut(s) 122, 158, 374
StyI CCWWGG 5 cut(s) 168, 474, 747, 766, 908
TaqI TCGA 3 cut(s) 255, 315, 440
TaqII GACCGA 1 cut(s) 75
TasI AATT 7 cut(s) 30, 571, 588, 610, 682, 699, 895
TatI WGTACW 1 cut(s) 801
TfiI GAWTC 4 cut(s) 317, 367, 718, 987
Tru1I TTAA 4 cut(s) 507, 594, 659, 885
Tru9I TTAA 4 cut(s) 507, 594, 659, 885
TscAI CASTG 2 cut(s) 93, 290
TseFI GTSAC 2 cut(s) 88, 460
TseI GCWGC 2 cut(s) 211, 450
Tsp45I GTSAC 2 cut(s) 88, 460
TspDTI ATGAA 3 cut(s) 17, 87, 549
TspGWI ACGGA 2 cut(s) 613, 941
TspRI CASTG 2 cut(s) 93, 290
VneI GTGCAC 1 cut(s) 496
VpaK11BI GGWCC 2 cut(s) 58, 226
XapI RAATTY 3 cut(s) 610, 682, 895
XhoI CTCGAG 1 cut(s) 254
XmaJI CCTAGG 1 cut(s) 908
XspI CTAG 2 cut(s) 617, 909
ZrmI AGTACT 1 cut(s) 803
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.