Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001316

Physical Location & Seq

Genomic Coordinates Forward (+)

43875739 .. 43878018

Gene Structure 2280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0349200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACTTATTCTACTGCCATTGCTTTAGCAATATGCATTTTCTCTCTTTTTCACAATATAGGAGGGACGCTTAGTGATGGGGGCTGTGACCTTTCTCGAGGACAATGGGTCTATGATCCGTCCTATCCTCTCTACAGTTCCACAGACTGTCCCTTCATTTGGAAGGAGTTTGATTGCCAAAAGAATGGTCGACCAGACAATGAGTACCTCAAGTACAGATGGCAGCCCGCTTCTTGCCAGACACCAAGGTTCAGTGGTAGAAGATTTTTGGAAAGATTTAGAGGGAAGCGCATACTGTTTGTAGGAGACTCACTGAGTATGAATCAATGGCAGTCCCTCACATGCATGCTTTACAAATCAGTGCAAGCCAAATACACCATAAACAGGATTGGAGGCCTCTCCATATTCAGCTTTCCAGCATATGATGTTTCGATCATGCTGTCCCGAAATGCATTTCTAGTAGATACAGTGCATATGAGAAATGGGAATGTTCTGATGCTGGACTCAATTGAGAATGGAAGTTACTGGAGAACCTTTGATGTTATCATCTTCAATACATGGCATTGGTGGCTTCATACTGGAAAAAAACAACCGTGGGCTTTTGTTCGTTATGGAGTGAATAATGCACACAAAGACATGAATCGCATGGTGGCGTATGAGAAAGCTCTAAATACATGGGCGAGATGGGTAGACTCAAGTGTGGACACTGATAAAACAAAGATCTTCTTCCAGGGTGTTTCTCCCGATCATGTGAATCCAAGAGAATGGGGTGATGATGCAAACTCAAAGAGTTGTTTGGGAGAAACTGAACCAGTGAAGGGGACACAATATCCAGGAGGTTCACACCCAGGAGAAGTTGTTTTAGAAAGGGTATTGAGAAAAATTTCAAAGCCAGTTCATTTGCTAAACATCACCAGACTTTCACAACTAAGAAAAGACAGTCACCCTTCAGCCTATGGCTTCGGCGGCCACCGTGGCATGGATTGTACCCACTGGTGTGTTCCCGGTGTTCCAGATACTTGGAACCAACTTCTATTTGCAGCACTCTTCCAGGGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

353

Amino Acids

40.44

Weight (kDa)

8.97

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	28 - 80	8.4e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	82 - 347	5e-88	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030
fragaria_vesca	FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370
prunus_persica	Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0138071
rosa_laevigata	RLG00000019698 RLG00000019716 RLG00000019717 RLG00000019722
rosa_multiflora	Rmu_sc0008250.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106510 Rroxscaffold_2G00106540
rosa_rugosa	Rorug02G0348700 Rorug02G0349200 Rorug02G0349300 Rorug02G0349300 Rorug02G0349400
rosa_samantha	Rh2AG395500 Rh2AG396100 Rh2BG402500 Rh2BG402600 Rh2BG410400 Rh2CG382000 Rh2CG382600 Rh2DG417300 Rh2DG417400 Rh2DG417900
rosa_wichuraiana	Rw2G032340 Rw2G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	190, 690
AciI	CCGC	2 cut(s)	228, 966
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	967
AcsI	RAATTY	1 cut(s)	882
AcuI	CTGAAG	1 cut(s)	933
AfaI	GTAC	3 cut(s)	206, 215, 988
AfiI	CCNNNNNNNGG	4 cut(s)	159, 384, 818, 979
AgsI	TTSAA	2 cut(s)	553, 888
AhdI	GACNNNNNGTC	1 cut(s)	107
AjnI	CCWGG	4 cut(s)	729, 832, 847, 1050
AleI	CACNNNNGTG	1 cut(s)	996
AluBI	AGCT	2 cut(s)	411, 665
AluI	AGCT	2 cut(s)	411, 665
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	2 cut(s)	394, 967
ApeKI	GCWGC	2 cut(s)	223, 1040
ApoI	RAATTY	1 cut(s)	882
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
Asp700I	GAANNNNTTC	1 cut(s)	883
AspLEI	GCGC	1 cut(s)	291
AsuC2I	CCSGG	1 cut(s)	1005
AsuHPI	GGTGA	3 cut(s)	782, 904, 935
AvaI	CYCGRG	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	1058
BbvI	GCAGC	2 cut(s)	235, 1052
BccI	CCATC	3 cut(s)	71, 213, 678
BciT130I	CCWGG	4 cut(s)	731, 834, 849, 1052
BcnI	CCSGG	1 cut(s)	1005
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	975
BglII	AGATCT	1 cut(s)	720
BisI	GCNGC	3 cut(s)	224, 967, 1041
BlsI	GCNGC	3 cut(s)	225, 968, 1042
Bme1390I	CCNGG	5 cut(s)	731, 834, 849, 1005, 1052
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	1025
BmrFI	CCNGG	5 cut(s)	731, 834, 849, 1005, 1052
BmsI	GCATC	2 cut(s)	486, 766
BpmI	CTGGAG	1 cut(s)	547
BpuEI	CTTGAG	2 cut(s)	194, 679
BpuMI	CCSGG	1 cut(s)	1005
BsaJI	CCNNGG	6 cut(s)	245, 593, 730, 847, 973, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 384, 818, 979
Bse1I	ACTGG	5 cut(s)	530, 583, 812, 893, 998
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	4 cut(s)	731, 834, 849, 1052
BseDI	CCNNGG	6 cut(s)	245, 593, 730, 847, 973, 1051
BseLI	CCNNNNNNNGG	4 cut(s)	159, 384, 818, 979
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	5 cut(s)	530, 583, 812, 893, 998
BseXI	GCAGC	2 cut(s)	235, 1052
BshFI	GGCC	2 cut(s)	396, 969
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	1005
BslFI	GGGAC	5 cut(s)	79, 135, 319, 427, 835
BslI	CCNNNNNNNGG	4 cut(s)	159, 384, 818, 979
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	5 cut(s)	79, 135, 319, 427, 835
BsnI	GGCC	2 cut(s)	396, 969
BsoBI	CYCGRG	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	1058
Bsp143I	GATC	4 cut(s)	115, 432, 720, 745
BspACI	CCGC	2 cut(s)	228, 966
BspANI	GGCC	2 cut(s)	396, 969
BspCNI	CTCAG	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	1058
BspLI	GGNNCC	1 cut(s)	1025
BspPI	GGATC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	5 cut(s)	530, 583, 812, 893, 998
BssECI	CCNNGG	6 cut(s)	245, 593, 730, 847, 973, 1051
BssMI	GATC	4 cut(s)	115, 432, 720, 745
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	4 cut(s)	731, 834, 849, 1052
Bst4CI	ACNGT	7 cut(s)	137, 149, 297, 469, 594, 941, 974
Bst6I	CTCTTC	1 cut(s)	1052
BstC8I	GCNNGC	3 cut(s)	228, 347, 366
BstDEI	CTNAG	3 cut(s)	71, 314, 929
BstDSI	CCRYGG	2 cut(s)	593, 973
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	4 cut(s)	118, 435, 723, 748
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	4 cut(s)	115, 432, 720, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	568, 966, 975
BstNI	CCWGG	4 cut(s)	731, 834, 849, 1052
BstNSI	RCATGY	2 cut(s)	345, 349
BstSCI	CCNGG	5 cut(s)	729, 832, 847, 1003, 1050
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	235, 1052
BstX2I	RGATCY	1 cut(s)	720
BstXI	CCANNNNNNTGG	3 cut(s)	185, 765, 1020
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	396, 969
BtgI	CCRYGG	2 cut(s)	593, 973
BtsIMutI	CAGTG	7 cut(s)	259, 311, 366, 474, 705, 819, 991
Cac8I	GCNNGC	3 cut(s)	228, 347, 366
CciI	TCATGA	1 cut(s)	1058
CfoI	GCGC	1 cut(s)	291
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	3 cut(s)	205, 214, 987
CviQI	GTAC	3 cut(s)	205, 214, 987
DdeI	CTNAG	3 cut(s)	71, 314, 929
DpnI	GATC	4 cut(s)	117, 434, 722, 747
DpnII	GATC	4 cut(s)	115, 432, 720, 745
DriI	GACNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	967
Eam1104I	CTCTTC	1 cut(s)	1052
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	1052
Eco130I	CCWWGG	1 cut(s)	245
Eco147I	AGGCCT	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	1058
Eco57I	CTGAAG	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	96
EcoRII	CCWGG	4 cut(s)	729, 832, 847, 1050
EcoT14I	CCWWGG	1 cut(s)	245
EcoT22I	ATGCAT	3 cut(s)	38, 347, 454
EcoT38I	GRGCYC	1 cut(s)	1058
ErhI	CCWWGG	1 cut(s)	245
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	5 cut(s)	79, 135, 319, 427, 835
FauI	CCCGC	1 cut(s)	235
FauNDI	CATATG	2 cut(s)	421, 474
FblI	GTMKAC	2 cut(s)	190, 690
Fnu4HI	GCNGC	3 cut(s)	224, 967, 1041
FriOI	GRGCYC	1 cut(s)	1058
Fsp4HI	GCNGC	3 cut(s)	224, 967, 1041
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	3 cut(s)	224, 967, 1041
GsuI	CTGGAG	1 cut(s)	547
HaeIII	GGCC	2 cut(s)	396, 969
HapII	CCGG	1 cut(s)	1005
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	291
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HinfI	GANTC	6 cut(s)	308, 322, 503, 640, 692, 754
HpaII	CCGG	1 cut(s)	1005
HphI	GGTGA	3 cut(s)	782, 904, 935
Hpy166II	GTNNAC	4 cut(s)	191, 691, 703, 842
Hpy188I	TCNGA	1 cut(s)	495
Hpy188III	TCNNGA	5 cut(s)	96, 444, 743, 1013, 1059
Hpy8I	GTNNAC	4 cut(s)	191, 691, 703, 842
HpyAV	CCTTC	4 cut(s)	157, 163, 811, 957
HpyCH4III	ACNGT	7 cut(s)	137, 149, 297, 469, 594, 941, 974
HpyCH4V	TGCA	8 cut(s)	36, 345, 364, 452, 472, 626, 779, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	568, 966, 975
HpyF3I	CTNAG	3 cut(s)	71, 314, 929
HspAI	GCGC	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	115, 432, 720, 745
Lsp1109I	GCAGC	2 cut(s)	235, 1052
LweI	GCATC	2 cut(s)	486, 766
MaeI	CTAG	1 cut(s)	458
MaeIII	GTNAC	3 cut(s)	86, 521, 941
MalI	GATC	4 cut(s)	117, 434, 722, 747
MboI	GATC	4 cut(s)	115, 432, 720, 745
MboII	GAAGA	5 cut(s)	273, 541, 715, 718, 1039
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	1 cut(s)	1058
MluCI	AATT	2 cut(s)	507, 882
MlyI	GAGTC	3 cut(s)	302, 497, 686
MnlI	CCTC	9 cut(s)	56, 92, 138, 218, 275, 347, 386, 407, 830
Mph1103I	ATGCAT	3 cut(s)	38, 347, 454
MroXI	GAANNNNTTC	1 cut(s)	883
MslI	CAYNNNNRTG	2 cut(s)	344, 996
MspI	CCGG	1 cut(s)	1005
MspR9I	CCNGG	5 cut(s)	731, 834, 849, 1005, 1052
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	4 cut(s)	731, 834, 849, 1052
MwoI	GCNNNNNNNGC	3 cut(s)	568, 966, 975
NciI	CCSGG	1 cut(s)	1005
NdeI	CATATG	2 cut(s)	421, 474
NdeII	GATC	4 cut(s)	115, 432, 720, 745
NlaIV	GGNNCC	1 cut(s)	1025
NmuCI	GTSAC	2 cut(s)	86, 941
NsiI	ATGCAT	3 cut(s)	38, 347, 454
NspI	RCATGY	2 cut(s)	345, 349
OliI	CACNNNNGTG	1 cut(s)	996
PaeI	GCATGC	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	96
PagI	TCATGA	1 cut(s)	1058
PceI	AGGCCT	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	883
PfeI	GAWTC	3 cut(s)	322, 640, 754
PfoI	TCCNGGA	1 cut(s)	832
PkrI	GCNGC	3 cut(s)	225, 968, 1042
PleI	GAGTC	3 cut(s)	302, 497, 686
PpsI	GAGTC	3 cut(s)	302, 497, 686
Psp6I	CCWGG	4 cut(s)	729, 832, 847, 1050
PspGI	CCWGG	4 cut(s)	729, 832, 847, 1050
PspN4I	GGNNCC	1 cut(s)	1025
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	3 cut(s)	206, 215, 988
RsaNI	GTAC	3 cut(s)	205, 214, 987
RseI	CAYNNNNRTG	2 cut(s)	344, 996
SalI	GTCGAC	1 cut(s)	189
SatI	GCNGC	3 cut(s)	224, 967, 1041
Sau3AI	GATC	4 cut(s)	115, 432, 720, 745
SchI	GAGTC	3 cut(s)	302, 497, 686
ScrFI	CCNGG	5 cut(s)	731, 834, 849, 1005, 1052
SduI	GDGCHC	1 cut(s)	1058
SetI	ASST	7 cut(s)	93, 210, 251, 413, 536, 667, 841
SfaNI	GCATC	2 cut(s)	486, 766
SfcI	CTRYAG	1 cut(s)	133
Sfr274I	CTCGAG	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	96
SmiMI	CAYNNNNRTG	2 cut(s)	344, 996
SmlI	CTYRAG	3 cut(s)	96, 209, 694
SmoI	CTYRAG	3 cut(s)	96, 209, 694
SphI	GCATGC	1 cut(s)	349
Sse9I	AATT	2 cut(s)	507, 882
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	2 cut(s)	228, 966
SspMI	CTAG	1 cut(s)	458
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	5 cut(s)	729, 832, 847, 1003, 1050
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	7 cut(s)	137, 149, 297, 469, 594, 941, 974
TaqI	TCGA	3 cut(s)	97, 190, 431
TasI	AATT	2 cut(s)	507, 882
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	969
TfiI	GAWTC	3 cut(s)	322, 640, 754
TscAI	CASTG	7 cut(s)	259, 318, 366, 474, 712, 819, 998
TseFI	GTSAC	2 cut(s)	86, 941
TseI	GCWGC	2 cut(s)	223, 1040
Tsp45I	GTSAC	2 cut(s)	86, 941
TspDTI	ATGAA	5 cut(s)	145, 335, 563, 653, 887
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	7 cut(s)	259, 318, 366, 474, 712, 819, 998
XapI	RAATTY	1 cut(s)	882
XceI	RCATGY	2 cut(s)	345, 349
XhoI	CTCGAG	1 cut(s)	96
XmiI	GTMKAC	2 cut(s)	190, 690
XmnI	GAANNNNTTC	1 cut(s)	883
XspI	CTAG	1 cut(s)	458
Zsp2I	ATGCAT	3 cut(s)	38, 347, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.