Rorug02G0349300

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001316
Physical Location & Seq
Forward (+)
43897255 .. 43901657
4403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0349300.1

Sequence Viewer

Length: 672 bp
ATGGCTGTGGCTATGGCTTCTTGCAGTCTTGGGCTTAGCTTGAATACTAGTAATTCTAGTTTGAAGAAACCACTTGTAAACCCATTACCAACTGGGGCTTTGCTGGAAGGCTCCCCTGTGTTTGGTTCTAAAAGCATCAGCATTGTTCAGAAAGGAAGATGGCTATCATCATCAGCTTCAATAATTGCACAAGCATCATCTGCTACAGCTGTGGAGGATGGTAAGCCAGATGAAAGTGACGTGATTCCAGTTCCCAAAGTTATCATTGACCAGGATTCTGATCCAGATGCAACTGTGGTGGAGATAACCTTTGGAGATCGGCTTGGGGCTCTTCTTGATACTATGAGTGCGCTTAAGAACCTGGGCCTGAACGTTGTCAAGGCCAATGTGTTTCTGGATTCTTCTGGAAAGCACAACAAGTTTGCCATTACTAGAGCAGATACTGGTAGAAAAGTAGATGATCCAGAGTTGCTTGAGGCTATTCGTTTGACAATTATAAATAATCTGATACAGTATCATCCGGAATCAAGTTCCCAATTAGCGATGGGAACAGCATTTGGAATTGTGCCACCACCACAACAGGTTGATGTGGATATAGCAACCCGTATACGCATTTATGACGACGGCCCCAACCGAAGATTTCCGCAGTTTGCTTACTGTGGAGTCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

223

Amino Acids

23.68

Weight (kDa)

5.18

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AccI GTMKAC 1 cut(s) 607
AccIII TCCGGA 1 cut(s) 520
AciI CCGC 1 cut(s) 644
AclI AACGTT 1 cut(s) 372
AclWI GGATC 2 cut(s) 275, 455
AfiI CCNNNNNNNGG 1 cut(s) 122
AflII CTTAAG 1 cut(s) 353
AgsI TTSAA 3 cut(s) 43, 64, 180
AhlI ACTAGT 1 cut(s) 47
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 2 cut(s) 270, 360
AluBI AGCT 4 cut(s) 39, 176, 209, 669
AluI AGCT 4 cut(s) 39, 176, 209, 669
AlwI GGATC 2 cut(s) 275, 455
AlwNI CAGNNNCTG 1 cut(s) 443
Aor13HI TCCGGA 1 cut(s) 520
AoxI GGCC 3 cut(s) 364, 381, 625
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 364, 626
BanII GRGCYC 1 cut(s) 331
BccI CCATC 3 cut(s) 153, 212, 538
BceAI ACGGC 1 cut(s) 640
BciT130I CCWGG 2 cut(s) 272, 362
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 3 cut(s) 48, 57, 432
BfmI CTRYAG 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 353
BlpI GCTNAGC 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 272, 362
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 364, 626
BmiI GGNNCC 2 cut(s) 112, 628
BmrFI CCNGG 2 cut(s) 272, 362
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 3 cut(s) 144, 203, 277
BmuI ACTGGG 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 494
BsaBI GATNNNNATC 2 cut(s) 163, 279
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 520
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 3 cut(s) 97, 248, 448
Bse8I GATNNNNATC 2 cut(s) 163, 279
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 2 cut(s) 272, 362
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 2 cut(s) 223, 517
BseJI GATNNNNATC 2 cut(s) 163, 279
BseLI CCNNNNNNNGG 1 cut(s) 122
BseNI ACTGG 3 cut(s) 97, 248, 448
BshFI GGCC 3 cut(s) 366, 383, 627
BsiSI CCGG 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 122
BsnI GGCC 3 cut(s) 366, 383, 627
Bsp1286I GDGCHC 1 cut(s) 331
Bsp13I TCCGGA 1 cut(s) 520
Bsp143I GATC 3 cut(s) 280, 316, 460
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 1 cut(s) 644
BspANI GGCC 3 cut(s) 366, 383, 627
BspEI TCCGGA 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 112, 628
BspPI GGATC 2 cut(s) 275, 455
BspQI GCTCTTC 1 cut(s) 336
BspTI CTTAAG 1 cut(s) 353
BsrI ACTGG 3 cut(s) 97, 248, 448
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 3 cut(s) 280, 316, 460
BssNAI GTATAC 1 cut(s) 608
Bst1107I GTATAC 1 cut(s) 608
Bst2UI CCWGG 2 cut(s) 272, 362
Bst4CI ACNGT 3 cut(s) 295, 513, 659
Bst6I CTCTTC 1 cut(s) 336
BstAFI CTTAAG 1 cut(s) 353
BstAPI GCANNNNNTGC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 223, 517
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 3 cut(s) 283, 319, 463
BstMBI GATC 3 cut(s) 280, 316, 460
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 2 cut(s) 272, 362
BstSCI CCNGG 2 cut(s) 270, 360
BstSFI CTRYAG 1 cut(s) 204
BstZ17I GTATAC 1 cut(s) 608
BsuRI GGCC 3 cut(s) 366, 383, 627
BtgZI GCGATG 1 cut(s) 557
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 223, 517
CaiI CAGNNNCTG 1 cut(s) 443
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 2 cut(s) 364, 626
CspCI CAANNNNNGTGG 2 cut(s) 279, 314
DdeI CTNAG 1 cut(s) 35
DpnI GATC 3 cut(s) 282, 318, 462
DpnII GATC 3 cut(s) 280, 316, 460
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 270, 360
EcoT38I GRGCYC 1 cut(s) 331
FaiI YATR 6 cut(s) 14, 344, 497, 596, 608, 618
FblI GTMKAC 1 cut(s) 607
FokI GGATG 2 cut(s) 230, 504
FriOI GRGCYC 1 cut(s) 331
FspBI CTAG 3 cut(s) 48, 57, 432
GlaI GCGC 1 cut(s) 351
HaeIII GGCC 3 cut(s) 366, 383, 627
HapII CCGG 1 cut(s) 521
HhaI GCGC 1 cut(s) 352
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HinfI GANTC 5 cut(s) 244, 275, 398, 524, 663
HpaII CCGG 1 cut(s) 521
Hpy166II GTNNAC 2 cut(s) 79, 608
Hpy188I TCNGA 3 cut(s) 150, 280, 507
Hpy188III TCNNGA 6 cut(s) 284, 335, 395, 405, 464, 521
Hpy8I GTNNAC 2 cut(s) 79, 608
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 3 cut(s) 295, 513, 659
HpyCH4IV ACGT 2 cut(s) 240, 372
HpyCH4V TGCA 3 cut(s) 24, 188, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 2 cut(s) 240, 372
HspAI GCGC 1 cut(s) 350
Kpn2I TCCGGA 1 cut(s) 520
Kzo9I GATC 3 cut(s) 280, 316, 460
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 116
LweI GCATC 3 cut(s) 144, 203, 277
MaeI CTAG 3 cut(s) 48, 57, 432
MaeII ACGT 2 cut(s) 240, 372
MaeIII GTNAC 1 cut(s) 236
MalI GATC 3 cut(s) 282, 318, 462
MboI GATC 3 cut(s) 280, 316, 460
MboII GAAGA 5 cut(s) 76, 168, 323, 393, 648
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 5 cut(s) 52, 183, 492, 536, 561
MlyI GAGTC 1 cut(s) 672
MnlI CCTC 2 cut(s) 208, 469
MroI TCCGGA 1 cut(s) 520
MseI TTAA 1 cut(s) 354
MspA1I CMGCKG 2 cut(s) 209, 669
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 1 cut(s) 521
MspR9I CCNGG 2 cut(s) 272, 362
MvaI CCWGG 2 cut(s) 272, 362
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 3 cut(s) 280, 316, 460
NlaIV GGNNCC 2 cut(s) 112, 628
NmuCI GTSAC 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 336
PfeI GAWTC 4 cut(s) 244, 275, 398, 524
PleI GAGTC 1 cut(s) 671
PpsI GAGTC 1 cut(s) 671
PsiI TTATAA 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 270, 360
PspGI CCWGG 2 cut(s) 270, 360
PspN4I GGNNCC 2 cut(s) 112, 628
PspPI GGNCC 2 cut(s) 364, 626
PstNI CAGNNNCTG 1 cut(s) 443
PvuII CAGCTG 2 cut(s) 209, 669
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 354
Sau3AI GATC 3 cut(s) 280, 316, 460
Sau96I GGNCC 2 cut(s) 364, 626
SchI GAGTC 1 cut(s) 672
ScrFI CCNGG 2 cut(s) 272, 362
SduI GDGCHC 1 cut(s) 331
SetI ASST 9 cut(s) 41, 178, 211, 243, 311, 363, 375, 585, 671
SfaNI GCATC 3 cut(s) 144, 203, 277
SfcI CTRYAG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 353, 473
SmoI CTYRAG 2 cut(s) 353, 473
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 5 cut(s) 52, 183, 492, 536, 561
SsiI CCGC 1 cut(s) 644
SspMI CTAG 3 cut(s) 48, 57, 432
StyD4I CCNGG 2 cut(s) 270, 360
TaaI ACNGT 3 cut(s) 295, 513, 659
TaiI ACGT 2 cut(s) 243, 375
TasI AATT 5 cut(s) 52, 183, 492, 536, 561
TfiI GAWTC 4 cut(s) 244, 275, 398, 524
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseFI GTSAC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 246
Vha464I CTTAAG 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 607
XspI CTAG 3 cut(s) 48, 57, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.