Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001316

Physical Location & Seq

Genomic Coordinates Forward (+)

55930189 .. 55931313

Gene Structure 1125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGGCCTCTGACTCTCAATCAGATACCTTAGCACAAGGCCAAGAGCTCAAGGATGGGATGCAGCTTTTTTCAGCATCTGGGATTTTCAGGTTAGGATTCTTTAAGCCTGGGGATGCAAGTAACTCTTACTTGGGTATATGGTACAACAGAAATAATGAAAAAGCAGTATGGGTTGCCAACCGAAACAATCCCATTCTTGACAATTCTGGAGTTCTTAGAATTGATCAGTATGGTAACTTGAAGATTACACAGAAGATGGTAGATGATACTGTACTATATTCAGTTAAAGAAGCAATCAATACTAGTGCTATTCTTCTTGACAGTGGAAATTTTGTGCTTAGTGAGTTGAACGCTGATGGGTCTATAAAGCAGGAGTTGTGGCAAAGCTTTGATTATCCAACTGACACAATTTTGCCAAAAATGAAGTTGGGATTTAATCGAAAAACTGGCCTCAATTGGACTCTCAAATCATGGAGAACTGGAAATTTTCCTAGCATTGGGTCCTTTACACTTGGTTTGGACCCTAGTGGTGTTAAACAAATGGTCATTTCTTGGAGAGGAAATCTGTACTGGACTAGTGGATCCTGGCACACTTGGTGCTTCAGCCTTACAGATGAGTTTTGCAGTAACTATAAGTACAACTTTAGCTACATATCAAATGAGAATGAAACATTCTTGAGTTATTCAGTAGATAAAGGTACCACTATTTTCCCAAGACTCCTGTTGACTGAAGAAGGTGAACTCAGAGGTTTCGGGATGGATGCCATGTTTACAGGAGTTTCATGCACTTCTTCCACCAACTCTACCTTGAAAAATGGGTGTGTTGAGCAAAGGCAACCAGACTGCAGGAGCTCTCATGACAAATTCGTGCCAAAACTTGGTCTCATGTCTCACAGTGGAATCAAGATCGTTGAGAATGAAAACATGACTCTGATTGATTGTTGGGATGTTTGCTTCAAAATGTGTTCTTGTCTTGCTTATGCTTCTGCAAATGATGATGGCACCGGCTGCGAGATTTGGAAGAAAGGAGCAAGTTTCACACAAAACAATTTGGGTAGTCTGAGAGAGATACACATCCTGGAATCCAAAGGTAAATTATCTACATTTTATGACATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

375

Amino Acids

41.91

Weight (kDa)

5.39

Isoelectric Point (pI)

26.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	57 - 160	1e-30	D-mannose binding lectin
PAN_2	PF08276	283 - 343	1.9e-08	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030
fragaria_vesca	FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370
prunus_persica	Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0138071
rosa_laevigata	RLG00000019698 RLG00000019716 RLG00000019717 RLG00000019722
rosa_multiflora	Rmu_sc0008250.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106510 Rroxscaffold_2G00106540
rosa_rugosa	Rorug02G0348700 Rorug02G0349200 Rorug02G0349300 Rorug02G0349300 Rorug02G0349400
rosa_samantha	Rh2AG395500 Rh2AG396100 Rh2BG402500 Rh2BG402600 Rh2BG410400 Rh2CG382000 Rh2CG382600 Rh2DG417300 Rh2DG417400 Rh2DG417900
rosa_wichuraiana	Rw2G032340 Rw2G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	701
AccB1I	GGYRCC	2 cut(s)	701, 1004
AccB7I	CCANNNNNTGG	1 cut(s)	881
AclWI	GGATC	2 cut(s)	579, 592
AcsI	RAATTY	3 cut(s)	331, 487, 866
AcuI	CTGAAG	2 cut(s)	589, 753
AdeI	CACNNNGTG	1 cut(s)	600
AfaI	GTAC	5 cut(s)	146, 276, 572, 641, 703
AfiI	CCNNNNNNNGG	2 cut(s)	500, 881
AgsI	TTSAA	4 cut(s)	244, 352, 814, 961
AhlI	ACTAGT	2 cut(s)	305, 578
AjnI	CCWGG	3 cut(s)	109, 587, 1080
AluBI	AGCT	5 cut(s)	49, 67, 390, 651, 855
AluI	AGCT	5 cut(s)	49, 67, 390, 651, 855
Alw21I	GWGCWC	2 cut(s)	51, 857
Alw26I	GTCTC	2 cut(s)	890, 897
AlwI	GGATC	2 cut(s)	579, 592
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	6, 40, 451
ApeKI	GCWGC	2 cut(s)	64, 1011
ApoI	RAATTY	3 cut(s)	331, 487, 866
Asp718I	GGTACC	1 cut(s)	701
AspS9I	GGNCC	2 cut(s)	504, 523
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	2 cut(s)	504, 523
BamHI	GGATCC	1 cut(s)	584
BanI	GGYRCC	2 cut(s)	701, 1004
BanII	GRGCYC	2 cut(s)	51, 857
Bbv12I	GWGCWC	2 cut(s)	51, 857
BbvI	GCAGC	2 cut(s)	76, 998
BccI	CCATC	5 cut(s)	50, 253, 353, 754, 995
BciT130I	CCWGG	3 cut(s)	111, 589, 1082
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	890, 897
BcuI	ACTAGT	2 cut(s)	305, 578
BfaI	CTAG	4 cut(s)	306, 495, 528, 579
BfmI	CTRYAG	1 cut(s)	847
BisI	GCNGC	2 cut(s)	65, 1012
BlsI	GCNGC	2 cut(s)	66, 1013
Bme1390I	CCNGG	3 cut(s)	111, 589, 1082
Bme18I	GGWCC	2 cut(s)	504, 523
BmgT120I	GGNCC	2 cut(s)	504, 523
BmiI	GGNNCC	5 cut(s)	505, 525, 586, 703, 1006
BmrFI	CCNGG	3 cut(s)	111, 589, 1082
BmsI	GCATC	4 cut(s)	51, 86, 106, 754
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	31
BpuEI	CTTGAG	2 cut(s)	35, 700
BsaBI	GATNNNNATC	1 cut(s)	1076
BsaI	GGTCTC	1 cut(s)	890
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 881
Bse118I	RCCGGY	1 cut(s)	1007
Bse1I	ACTGG	3 cut(s)	454, 487, 578
Bse8I	GATNNNNATC	1 cut(s)	1076
BseBI	CCWGG	3 cut(s)	111, 589, 1082
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	7 cut(s)	61, 66, 121, 765, 769, 955, 1077
BseJI	GATNNNNATC	1 cut(s)	1076
BseLI	CCNNNNNNNGG	2 cut(s)	500, 881
BseMII	CTCAG	2 cut(s)	760, 1055
BseNI	ACTGG	3 cut(s)	454, 487, 578
BseXI	GCAGC	2 cut(s)	76, 998
BshFI	GGCC	3 cut(s)	8, 42, 453
BshNI	GGYRCC	2 cut(s)	701, 1004
BsiHKAI	GWGCWC	2 cut(s)	51, 857
BsiSI	CCGG	1 cut(s)	1008
BslI	CCNNNNNNNGG	2 cut(s)	500, 881
BsmAI	GTCTC	2 cut(s)	890, 897
BsnI	GGCC	3 cut(s)	8, 42, 453
Bso31I	GGTCTC	1 cut(s)	890
Bsp1286I	GDGCHC	2 cut(s)	51, 857
Bsp143I	GATC	3 cut(s)	226, 584, 909
BspANI	GGCC	3 cut(s)	8, 42, 453
BspCNI	CTCAG	2 cut(s)	759, 1056
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	5 cut(s)	505, 525, 586, 703, 1006
BspMAI	CTGCAG	1 cut(s)	851
BspPI	GGATC	2 cut(s)	579, 592
BspT107I	GGYRCC	2 cut(s)	701, 1004
BspTNI	GGTCTC	1 cut(s)	890
BsrFI	RCCGGY	1 cut(s)	1007
BsrI	ACTGG	3 cut(s)	454, 487, 578
BssAI	RCCGGY	1 cut(s)	1007
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	3 cut(s)	226, 584, 909
Bst2UI	CCWGG	3 cut(s)	111, 589, 1082
Bst4CI	ACNGT	3 cut(s)	274, 326, 899
BstAPI	GCANNNNNTGC	1 cut(s)	1011
BstDEI	CTNAG	5 cut(s)	31, 218, 341, 746, 1064
BstF5I	GGATG	7 cut(s)	61, 66, 121, 765, 769, 955, 1077
BstKTI	GATC	3 cut(s)	229, 587, 912
BstMAI	GTCTC	2 cut(s)	890, 897
BstMBI	GATC	3 cut(s)	226, 584, 909
BstMWI	GCNNNNNNNGC	1 cut(s)	1011
BstNI	CCWGG	3 cut(s)	111, 589, 1082
BstSCI	CCNGG	3 cut(s)	109, 587, 1080
BstSFI	CTRYAG	1 cut(s)	847
BstV1I	GCAGC	2 cut(s)	76, 998
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BsuRI	GGCC	3 cut(s)	8, 42, 453
BtsCI	GGATG	7 cut(s)	61, 66, 121, 765, 769, 955, 1077
BtsIMutI	CAGTG	2 cut(s)	331, 904
CaiI	CAGNNNCTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	859
Cfr10I	RCCGGY	1 cut(s)	1007
Cfr13I	GGNCC	2 cut(s)	504, 523
Csp6I	GTAC	5 cut(s)	145, 275, 571, 640, 702
CviAII	CATG	7 cut(s)	474, 769, 786, 860, 889, 928, 1117
CviQI	GTAC	5 cut(s)	145, 275, 571, 640, 702
DdeI	CTNAG	5 cut(s)	31, 218, 341, 746, 1064
DpnI	GATC	3 cut(s)	228, 586, 911
DpnII	GATC	3 cut(s)	226, 584, 909
DraIII	CACNNNGTG	1 cut(s)	600
Ecl136II	GAGCTC	2 cut(s)	49, 855
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	2 cut(s)	51, 857
Eco31I	GGTCTC	1 cut(s)	890
Eco47I	GGWCC	2 cut(s)	504, 523
Eco53kI	GAGCTC	2 cut(s)	49, 855
Eco57I	CTGAAG	2 cut(s)	589, 753
EcoICRI	GAGCTC	2 cut(s)	49, 855
EcoO109I	RGGNCCY	1 cut(s)	504
EcoRII	CCWGG	3 cut(s)	109, 587, 1080
EcoT38I	GRGCYC	2 cut(s)	51, 857
FaeI	CATG	7 cut(s)	477, 772, 789, 863, 892, 931, 1120
FalI	AAGNNNNNCTT	4 cut(s)	112, 144, 629, 661
FatI	CATG	7 cut(s)	473, 768, 785, 859, 888, 927, 1116
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	65, 1012
FokI	GGATG	7 cut(s)	68, 73, 128, 772, 776, 962, 1064
FriOI	GRGCYC	2 cut(s)	51, 857
Fsp4HI	GCNGC	2 cut(s)	65, 1012
FspBI	CTAG	4 cut(s)	306, 495, 528, 579
GluI	GCNGC	2 cut(s)	65, 1012
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	8, 42, 453
HapII	CCGG	1 cut(s)	1008
Hin1II	CATG	7 cut(s)	477, 772, 789, 863, 892, 931, 1120
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	7 cut(s)	14, 99, 463, 720, 903, 931, 1085
HpaII	CCGG	1 cut(s)	1008
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	3 cut(s)	729, 743, 774
Hpy188I	TCNGA	5 cut(s)	13, 25, 749, 936, 1065
Hpy188III	TCNNGA	7 cut(s)	200, 210, 320, 679, 757, 860, 907
Hpy8I	GTNNAC	3 cut(s)	729, 743, 774
HpyAV	CCTTC	1 cut(s)	731
HpyCH4III	ACNGT	3 cut(s)	274, 326, 899
HpyCH4V	TGCA	6 cut(s)	64, 119, 627, 789, 849, 992
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1011
HpyF3I	CTNAG	5 cut(s)	31, 218, 341, 746, 1064
Hsp92II	CATG	7 cut(s)	477, 772, 789, 863, 892, 931, 1120
KpnI	GGTACC	1 cut(s)	705
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	226, 584, 909
LmnI	GCTCC	2 cut(s)	852, 1031
Lsp1109I	GCAGC	2 cut(s)	76, 998
LweI	GCATC	4 cut(s)	51, 86, 106, 754
MaeI	CTAG	4 cut(s)	306, 495, 528, 579
MaeIII	GTNAC	3 cut(s)	122, 236, 629
MalI	GATC	3 cut(s)	228, 586, 911
MboI	GATC	3 cut(s)	226, 584, 909
MboII	GAAGA	6 cut(s)	256, 268, 308, 746, 786, 1036
MfeI	CAATTG	1 cut(s)	457
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	2 cut(s)	51, 857
MluCI	AATT	9 cut(s)	205, 222, 331, 411, 457, 487, 866, 1051, 1097
MlyI	GAGTC	4 cut(s)	8, 457, 714, 925
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	4 cut(s)	19, 464, 554, 743
MseI	TTAA	4 cut(s)	105, 288, 438, 537
MspI	CCGG	1 cut(s)	1008
MspR9I	CCNGG	3 cut(s)	111, 589, 1082
MunI	CAATTG	1 cut(s)	457
MvaI	CCWGG	3 cut(s)	111, 589, 1082
MwoI	GCNNNNNNNGC	1 cut(s)	1011
NdeII	GATC	3 cut(s)	226, 584, 909
NlaIII	CATG	7 cut(s)	477, 772, 789, 863, 892, 931, 1120
NlaIV	GGNNCC	5 cut(s)	505, 525, 586, 703, 1006
PagI	TCATGA	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	99, 903, 1085
PflMI	CCANNNNNTGG	1 cut(s)	881
PfoI	TCCNGGA	1 cut(s)	1080
PkrI	GCNGC	2 cut(s)	66, 1013
PleI	GAGTC	4 cut(s)	8, 457, 714, 925
PpsI	GAGTC	4 cut(s)	8, 457, 714, 925
PpuMI	RGGWCCY	1 cut(s)	504
Psp124BI	GAGCTC	2 cut(s)	51, 857
Psp5II	RGGWCCY	1 cut(s)	504
Psp6I	CCWGG	3 cut(s)	109, 587, 1080
PspGI	CCWGG	3 cut(s)	109, 587, 1080
PspN4I	GGNNCC	5 cut(s)	505, 525, 586, 703, 1006
PspPI	GGNCC	2 cut(s)	504, 523
PspPPI	RGGWCCY	1 cut(s)	504
PstI	CTGCAG	1 cut(s)	851
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	584
RsaI	GTAC	5 cut(s)	146, 276, 572, 641, 703
RsaNI	GTAC	5 cut(s)	145, 275, 571, 640, 702
SacI	GAGCTC	2 cut(s)	51, 857
SaqAI	TTAA	4 cut(s)	105, 288, 438, 537
SatI	GCNGC	2 cut(s)	65, 1012
Sau3AI	GATC	3 cut(s)	226, 584, 909
Sau96I	GGNCC	2 cut(s)	504, 523
SchI	GAGTC	4 cut(s)	8, 457, 714, 925
ScrFI	CCNGG	3 cut(s)	111, 589, 1082
SduI	GDGCHC	2 cut(s)	51, 857
SfaNI	GCATC	4 cut(s)	51, 86, 106, 754
SfcI	CTRYAG	1 cut(s)	847
SinI	GGWCC	2 cut(s)	504, 523
SmlI	CTYRAG	2 cut(s)	50, 679
SmoI	CTYRAG	2 cut(s)	50, 679
SpeI	ACTAGT	2 cut(s)	305, 578
Sse9I	AATT	9 cut(s)	205, 222, 331, 411, 457, 487, 866, 1051, 1097
SseBI	AGGCCT	1 cut(s)	8
SspMI	CTAG	4 cut(s)	306, 495, 528, 579
SstI	GAGCTC	2 cut(s)	51, 857
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	109, 587, 1080
TaaI	ACNGT	3 cut(s)	274, 326, 899
TaqI	TCGA	1 cut(s)	442
TasI	AATT	9 cut(s)	205, 222, 331, 411, 457, 487, 866, 1051, 1097
TatI	WGTACW	3 cut(s)	274, 570, 639
TfiI	GAWTC	3 cut(s)	99, 903, 1085
Tru1I	TTAA	4 cut(s)	105, 288, 438, 537
Tru9I	TTAA	4 cut(s)	105, 288, 438, 537
TscAI	CASTG	2 cut(s)	331, 904
TseI	GCWGC	2 cut(s)	64, 1011
TspDTI	ATGAA	5 cut(s)	174, 440, 684, 774, 936
TspRI	CASTG	2 cut(s)	331, 904
Van91I	CCANNNNNTGG	1 cut(s)	881
VpaK11BI	GGWCC	2 cut(s)	504, 523
XapI	RAATTY	3 cut(s)	331, 487, 866
XspI	CTAG	4 cut(s)	306, 495, 528, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.