Rh2CG382000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001316
Physical Location & Seq
Reverse (-)
52129669 .. 52138357
8689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG382000.1

Sequence Viewer

Length: 1176 bp
ATGATAAAAAAAACTAAGGCCTCCTCCTCACGGCGCCCAACATACACTTTCACGATCGGTCAACATTTAGAGGGTGATTATTACAAATGTACATTGACCAACAGCTGTGACGATTGGGTCTGTCAAGTTAAACCATCTTGTCTAGTGCCAAAAGCCACTGTTCCTGAAATCCAGGCAGCCACATTGGTGAGTGACGGCTACATCACCAACAACACAAGAAGTGAGTACTCTTTGACGGTTTACTGTCGGGCTAAACTGGAGTACCCCAAAGGATCAGCATCACCACCAAGATTCGCCGTAGTTACAGAGTCGTTCAATTGCACATGGGCCACTTGGTTTCACAAACACTTGAGCCAGATTACAACAGCAAACAAGGACAAATTAGCAGATCGAAGAGCTACTCTTCTTATCAGGAGTTTAATCTCTGGAGCTGATGATATGCTTTTCAATTCCTCAACCTCTCACAATATGGACCCCAACCACATATACATTGTTGGCAACTCAGTCAAATTCGCTCACTTTGACAAGGTAACAAGAAGTCGAGATGATCAACAACAAAGCGTCTTTCAGCTTCTGAGAGCTTCTTTGCCACAGAATGTTCTAACTGGAGAGCTGTTACACTTCATTGGCCTACAAACAAACTGTACAAGAGAGAGATTCTTATTCTATAGGCTCCATCCAGGGATCTCCAATGGAGATGAAATGTGCTCCCTAAGACTTCACTCCTTTGAAACATCAAAAATTCAAGGACTTGGTCTGGCAAATAAAATTCTCAACAAATCTAGAGACACTGCCTATACTTCAATTGTAAAACTGTGGAACAAGCATTGGCACAATAATTGGCTGTTGAGGATTACCTCAACGAGGCTGAGAGCTTTGGGCTGCTACTCTCTTTATTTGAATAAGAAGAAACCCCTACCAGTTGCAGACTTTGTGAATTTCAGCCGGGCTGCTGTTGAGCATGCCAATGATCAAAAAACTATGATTGGTGGCATTTCGAAACGCTTGATTTACATTACGAGAATCTTTCCATATAATTTTCTGGAGCAAAGTTTTACTGGATTGGAACGGCAAAGGCAATCCTCAAGTGCTGTGGATGAAGAGTTGAAGACGTACCAGACAAAGGCATCTGTTTTGTATTTGAAAAATTGTAATGTGAAACTGCTAAATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

391

Amino Acids

44.68

Weight (kDa)

9.53

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 33
AclWI GGATC 2 cut(s) 280, 692
AcsI RAATTY 4 cut(s) 509, 741, 768, 937
AcyI GRCGYC 1 cut(s) 34
AfaI GTAC 5 cut(s) 91, 227, 263, 646, 1115
AfiI CCNNNNNNNGG 3 cut(s) 30, 864, 1123
AgsI TTSAA 8 cut(s) 316, 448, 731, 746, 804, 901, 1108, 1144
AjnI CCWGG 2 cut(s) 171, 679
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 7 cut(s) 105, 398, 431, 571, 581, 613, 875
AluI AGCT 7 cut(s) 105, 398, 431, 571, 581, 613, 875
Alw21I GWGCWC 1 cut(s) 710
Alw26I GTCTC 1 cut(s) 780
AlwI GGATC 2 cut(s) 280, 692
AlwNI CAGNNNCTG 1 cut(s) 574
AoxI GGCC 3 cut(s) 18, 327, 628
ApeKI GCWGC 3 cut(s) 176, 882, 950
ApoI RAATTY 4 cut(s) 509, 741, 768, 937
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 327, 472
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 4 cut(s) 86, 196, 199, 273
AsuII TTCGAA 1 cut(s) 998
AvaII GGWCC 1 cut(s) 472
BaeI ACNNNNGTAYC 2 cut(s) 245, 278
BanI GGYRCC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 1115
Bbv12I GWGCWC 1 cut(s) 710
BbvI GCAGC 3 cut(s) 188, 869, 937
BccI CCATC 2 cut(s) 142, 684
BceAI ACGGC 4 cut(s) 47, 211, 281, 1085
BciT130I CCWGG 2 cut(s) 173, 681
BclI TGATCA 2 cut(s) 547, 970
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 1 cut(s) 780
BfaI CTAG 2 cut(s) 143, 783
BfmI CTRYAG 1 cut(s) 667
BfoI RGCGCY 1 cut(s) 37
BisI GCNGC 3 cut(s) 177, 883, 951
BlsI GCNGC 3 cut(s) 178, 884, 952
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 3 cut(s) 173, 681, 947
Bme18I GGWCC 1 cut(s) 472
BmgT120I GGNCC 2 cut(s) 327, 472
BmiI GGNNCC 3 cut(s) 35, 474, 674
BmrFI CCNGG 3 cut(s) 173, 681, 947
BmsI GCATC 2 cut(s) 287, 1136
BpiI GAAGAC 1 cut(s) 1115
BpmI CTGGAG 4 cut(s) 278, 447, 627, 1064
Bpu14I TTCGAA 1 cut(s) 998
BpuEI CTTGAG 2 cut(s) 370, 1069
BpuMI CCSGG 1 cut(s) 947
BsaBI GATNNNNATC 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 680
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 864, 1123
Bse1I ACTGG 4 cut(s) 261, 610, 920, 1063
Bse8I GATNNNNATC 1 cut(s) 277
BseBI CCWGG 2 cut(s) 173, 681
BseDI CCNNGG 1 cut(s) 680
BseGI GGATG 2 cut(s) 676, 1102
BseJI GATNNNNATC 1 cut(s) 277
BseLI CCNNNNNNNGG 3 cut(s) 30, 864, 1123
BseMII CTCAG 3 cut(s) 516, 566, 860
BseNI ACTGG 4 cut(s) 261, 610, 920, 1063
BseRI GAGGAG 2 cut(s) 13, 16
BseXI GCAGC 3 cut(s) 188, 869, 937
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 20, 329, 630
BshNI GGYRCC 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 710
BsiSI CCGG 1 cut(s) 946
BslI CCNNNNNNNGG 3 cut(s) 30, 864, 1123
BsmAI GTCTC 1 cut(s) 780
BsnI GGCC 3 cut(s) 20, 329, 630
Bsp119I TTCGAA 1 cut(s) 998
Bsp1286I GDGCHC 1 cut(s) 710
Bsp1407I TGTACA 2 cut(s) 89, 644
Bsp143I GATC 6 cut(s) 54, 272, 388, 547, 684, 970
BspANI GGCC 3 cut(s) 20, 329, 630
BspCNI CTCAG 3 cut(s) 515, 567, 861
BspLI GGNNCC 3 cut(s) 35, 474, 674
BspPI GGATC 2 cut(s) 280, 692
BspQI GCTCTTC 1 cut(s) 388
BspT104I TTCGAA 1 cut(s) 998
BspT107I GGYRCC 1 cut(s) 33
BsrGI TGTACA 2 cut(s) 89, 644
BsrI ACTGG 4 cut(s) 261, 610, 920, 1063
BssECI CCNNGG 1 cut(s) 680
BssMI GATC 6 cut(s) 54, 272, 388, 547, 684, 970
BssNI GRCGYC 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 173, 681
Bst4CI ACNGT 5 cut(s) 160, 238, 245, 644, 816
Bst6I CTCTTC 3 cut(s) 388, 408, 1095
BstACI GRCGYC 1 cut(s) 34
BstAUI TGTACA 2 cut(s) 89, 644
BstBI TTCGAA 1 cut(s) 998
BstC8I GCNNGC 1 cut(s) 963
BstDEI CTNAG 5 cut(s) 15, 502, 575, 713, 869
BstENI CCTNNNNNAGG 1 cut(s) 862
BstF5I GGATG 2 cut(s) 676, 1102
BstH2I RGCGCY 1 cut(s) 37
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 6 cut(s) 57, 275, 391, 550, 687, 973
BstMAI GTCTC 1 cut(s) 780
BstMBI GATC 6 cut(s) 54, 272, 388, 547, 684, 970
BstMCI CGRYCG 1 cut(s) 57
BstNI CCWGG 2 cut(s) 173, 681
BstNSI RCATGY 1 cut(s) 965
BstSCI CCNGG 3 cut(s) 171, 679, 945
BstSFI CTRYAG 1 cut(s) 667
BstV1I GCAGC 3 cut(s) 188, 869, 937
BstV2I GAAGAC 1 cut(s) 1115
BstX2I RGATCY 1 cut(s) 684
BstYI RGATCY 1 cut(s) 684
BsuRI GGCC 3 cut(s) 20, 329, 630
BtsCI GGATG 2 cut(s) 676, 1102
BtsI GCAGTG 1 cut(s) 789
BtsIMutI CAGTG 2 cut(s) 156, 789
Cac8I GCNNGC 1 cut(s) 963
CaiI CAGNNNCTG 1 cut(s) 574
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 327, 472
CseI GACGC 1 cut(s) 550
Csp6I GTAC 5 cut(s) 90, 226, 262, 645, 1114
CspCI CAANNNNNGTGG 2 cut(s) 1074, 1109
CviAII CATG 2 cut(s) 324, 962
CviQI GTAC 5 cut(s) 90, 226, 262, 645, 1114
DdeI CTNAG 5 cut(s) 15, 502, 575, 713, 869
DinI GGCGCC 1 cut(s) 35
DpnI GATC 6 cut(s) 56, 274, 390, 549, 686, 972
DpnII GATC 6 cut(s) 54, 272, 388, 547, 684, 970
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 3 cut(s) 388, 408, 1095
EarI CTCTTC 3 cut(s) 388, 408, 1095
Eco147I AGGCCT 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 472
EcoNI CCTNNNNNAGG 1 cut(s) 862
EcoRII CCWGG 2 cut(s) 171, 679
EgeI GGCGCC 1 cut(s) 35
EheI GGCGCC 1 cut(s) 35
FaeI CATG 2 cut(s) 327, 965
FatI CATG 2 cut(s) 323, 961
FbaI TGATCA 2 cut(s) 547, 970
Fnu4HI GCNGC 3 cut(s) 177, 883, 951
FokI GGATG 2 cut(s) 663, 1109
Fsp4HI GCNGC 3 cut(s) 177, 883, 951
FspBI CTAG 2 cut(s) 143, 783
GlaI GCGC 1 cut(s) 35
GluI GCNGC 3 cut(s) 177, 883, 951
GsuI CTGGAG 4 cut(s) 278, 447, 627, 1064
HaeII RGCGCY 1 cut(s) 37
HaeIII GGCC 3 cut(s) 20, 329, 630
HapII CCGG 1 cut(s) 946
HgaI GACGC 1 cut(s) 550
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 34
Hin1II CATG 2 cut(s) 327, 965
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HinfI GANTC 4 cut(s) 291, 308, 657, 1023
HpaII CCGG 1 cut(s) 946
HphI GGTGA 4 cut(s) 86, 196, 199, 273
Hpy166II GTNNAC 2 cut(s) 62, 241
Hpy188I TCNGA 1 cut(s) 576
Hpy188III TCNNGA 7 cut(s) 52, 164, 412, 426, 542, 783, 1043
Hpy8I GTNNAC 2 cut(s) 62, 241
HpyCH4III ACNGT 5 cut(s) 160, 238, 245, 644, 816
HpyCH4IV ACGT 1 cut(s) 1112
HpyCH4V TGCA 2 cut(s) 321, 926
HpyF3I CTNAG 5 cut(s) 15, 502, 575, 713, 869
HpySE526I ACGT 1 cut(s) 1112
Hsp92I GRCGYC 1 cut(s) 34
Hsp92II CATG 2 cut(s) 327, 965
HspAI GCGC 1 cut(s) 34
KasI GGCGCC 1 cut(s) 33
Ksp22I TGATCA 2 cut(s) 547, 970
Kzo9I GATC 6 cut(s) 54, 272, 388, 547, 684, 970
LguI GCTCTTC 1 cut(s) 388
LmnI GCTCC 4 cut(s) 428, 678, 713, 1045
Lsp1109I GCAGC 3 cut(s) 188, 869, 937
LweI GCATC 2 cut(s) 287, 1136
MaeI CTAG 2 cut(s) 143, 783
MaeII ACGT 1 cut(s) 1112
MaeIII GTNAC 5 cut(s) 107, 191, 301, 529, 615
MalI GATC 6 cut(s) 56, 274, 390, 549, 686, 972
MboI GATC 6 cut(s) 54, 272, 388, 547, 684, 970
MboII GAAGA 5 cut(s) 395, 405, 919, 1112, 1120
MfeI CAATTG 2 cut(s) 316, 804
MflI RGATCY 1 cut(s) 684
MhlI GDGCHC 1 cut(s) 710
Mly113I GGCGCC 1 cut(s) 34
MlyI GAGTC 1 cut(s) 317
MseI TTAA 2 cut(s) 129, 419
MslI CAYNNNNRTG 2 cut(s) 185, 966
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 1 cut(s) 946
MspR9I CCNGG 3 cut(s) 173, 681, 947
MunI CAATTG 2 cut(s) 316, 804
MvaI CCWGG 2 cut(s) 173, 681
NarI GGCGCC 1 cut(s) 34
NciI CCSGG 1 cut(s) 947
NdeII GATC 6 cut(s) 54, 272, 388, 547, 684, 970
NlaIII CATG 2 cut(s) 327, 965
NlaIV GGNNCC 3 cut(s) 35, 474, 674
NmuCI GTSAC 2 cut(s) 107, 191
NspI RCATGY 1 cut(s) 965
NspV TTCGAA 1 cut(s) 998
OliI CACNNNNGTG 1 cut(s) 185
PaeI GCATGC 1 cut(s) 965
PceI AGGCCT 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 388
PfeI GAWTC 3 cut(s) 291, 657, 1023
PflFI GACNNNGTC 1 cut(s) 753
PkrI GCNGC 3 cut(s) 178, 884, 952
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 1 cut(s) 316
PluTI GGCGCC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 171, 679
PspGI CCWGG 2 cut(s) 171, 679
PspN4I GGNNCC 3 cut(s) 35, 474, 674
PspPI GGNCC 2 cut(s) 327, 472
PstNI CAGNNNCTG 1 cut(s) 574
PsuI RGATCY 1 cut(s) 684
PsyI GACNNNGTC 1 cut(s) 753
PvuI CGATCG 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 105
RsaI GTAC 5 cut(s) 91, 227, 263, 646, 1115
RsaNI GTAC 5 cut(s) 90, 226, 262, 645, 1114
RseI CAYNNNNRTG 2 cut(s) 185, 966
SapI GCTCTTC 1 cut(s) 388
SaqAI TTAA 2 cut(s) 129, 419
SatI GCNGC 3 cut(s) 177, 883, 951
Sau3AI GATC 6 cut(s) 54, 272, 388, 547, 684, 970
Sau96I GGNCC 2 cut(s) 327, 472
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 173, 681, 947
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 2 cut(s) 287, 1136
SfcI CTRYAG 1 cut(s) 667
SfoI GGCGCC 1 cut(s) 35
SfuI TTCGAA 1 cut(s) 998
SinI GGWCC 1 cut(s) 472
SmiMI CAYNNNNRTG 2 cut(s) 185, 966
SmlI CTYRAG 2 cut(s) 349, 1084
SmoI CTYRAG 2 cut(s) 349, 1084
SphI GCATGC 1 cut(s) 965
SseBI AGGCCT 1 cut(s) 20
SspDI GGCGCC 1 cut(s) 33
SspMI CTAG 2 cut(s) 143, 783
StuI AGGCCT 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 171, 679, 945
TaaI ACNGT 5 cut(s) 160, 238, 245, 644, 816
TaiI ACGT 1 cut(s) 1115
TaqI TCGA 3 cut(s) 391, 541, 998
TaqII GACCGA 1 cut(s) 47
TatI WGTACW 3 cut(s) 89, 225, 644
TfiI GAWTC 3 cut(s) 291, 657, 1023
Tru1I TTAA 2 cut(s) 129, 419
Tru9I TTAA 2 cut(s) 129, 419
TscAI CASTG 2 cut(s) 163, 796
TseFI GTSAC 2 cut(s) 107, 191
TseI GCWGC 3 cut(s) 176, 882, 950
Tsp45I GTSAC 2 cut(s) 107, 191
TspDTI ATGAA 3 cut(s) 613, 714, 1113
TspRI CASTG 2 cut(s) 163, 796
Tth111I GACNNNGTC 1 cut(s) 753
VpaK11BI GGWCC 1 cut(s) 472
XagI CCTNNNNNAGG 1 cut(s) 862
XapI RAATTY 4 cut(s) 509, 741, 768, 937
XbaI TCTAGA 1 cut(s) 782
XceI RCATGY 1 cut(s) 965
XspI CTAG 2 cut(s) 143, 783
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.