Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001316

Physical Location & Seq

Genomic Coordinates Forward (+)

55947868 .. 55948995

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGGCCTCTGACTCTCAATCAGATGCCTTAGCACAAGGCCAAGAGCTCAAGGATGGGATGCAGCTTTTTTCAGCATCTGGGATTTTCAGGTTAGGATTCTTTAAGCCTGGGGATGCAAGTAACTCTTACTTAGGTATATGGTACAACAGAAATAATGAAAAAGCAGTATGGGTTGCCAACCGAAACAATTCGATTCTTGATAATTCTGGAGTTCTTAGAATTGATCAGTATGGCAACTTGAAGATTACACAGAAGATGGTAGATGATATTGTTCTATATTCAGTTAAAGAAGCAATCAACGCTAGTGCTATTCTTCTTGACAGTGGAAATTTTGTGCTTAGTGAGTTGAACGCTGATGGGTCTATAAAGCAGGAGCTGTGGCAAAGCTTTGATTATCCAACTGATACACTTTTGCCAAAAATGAAGTTGGGATTTAATAGAAAAACAGGCCTCAATTGGACTCTCAAATCATGGAGAACTGGAAATTTTCCTAGCATTGGGTCCTTTACACTTGGTTTGGACCCTAGTGGTGTTAAACAAATGGTCATTTCTTGGAGAGGAAATCTGTACTGGACTAGTGGATCCTGGCACACTTGGTGCTTCAACCTTACAGACGAGTTTTGCAGTAACTATAAGTACAACTTTAGCTACATATCAAATGAGAATGAAACATACTTGAGTTATTCAGTAGATAAAGGTACCACTATTTTCCCAAGACTCCTGTTAAATGAAGAAGGTGAACTCAGAGGTTTCGGAATGGATGCCATGTTTACTGGAGTTTCATGCACTTCTTCCACCAACTCTACCTTGAAAAATGGGTGTGTTGAGCAAAGGCAACCAGACTGCAGGAGCTCTCATGAAAAATTCGTGCTGCGAAAATTTGGTGTCATGTCTCGCAGTGGAATCAAGATCCTTGAGAATGAAAACATGACTCTGATTGATTGTTGGGATGTTTGCTTCAAAATGTGTTCTTGTCTTGCTTATGCTTCTGCAAATGATGATGGCACCGGCTGCGAGGTTTGGAAGGAAGGAGCAAGTTTCACACAACACAAATTGGGTAGTCTGAGAGAGATACACATCCTGGAATCCAAAGGTAAATTATCTACATTTTATGAGTTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

376

Amino Acids

42.16

Weight (kDa)

5.56

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	57 - 160	3e-29	D-mannose binding lectin
PAN_2	PF08276	307 - 344	9.4e-08	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030
fragaria_vesca	FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370
prunus_persica	Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0138071
rosa_laevigata	RLG00000019698 RLG00000019716 RLG00000019717 RLG00000019722
rosa_multiflora	Rmu_sc0008250.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106510 Rroxscaffold_2G00106540
rosa_rugosa	Rorug02G0348700 Rorug02G0349200 Rorug02G0349300 Rorug02G0349300 Rorug02G0349400
rosa_samantha	Rh2AG395500 Rh2AG396100 Rh2BG402500 Rh2BG402600 Rh2BG410400 Rh2CG382000 Rh2CG382600 Rh2DG417300 Rh2DG417400 Rh2DG417900
rosa_wichuraiana	Rw2G032340 Rw2G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	701
AccB1I	GGYRCC	2 cut(s)	701, 1007
AclWI	GGATC	3 cut(s)	579, 592, 907
AcsI	RAATTY	4 cut(s)	331, 487, 866, 881
AdeI	CACNNNGTG	1 cut(s)	600
AfaI	GTAC	4 cut(s)	146, 572, 641, 703
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	5 cut(s)	244, 352, 607, 814, 964
AhlI	ACTAGT	1 cut(s)	578
AjnI	CCWGG	3 cut(s)	109, 587, 1083
AluBI	AGCT	6 cut(s)	49, 67, 379, 390, 651, 855
AluI	AGCT	6 cut(s)	49, 67, 379, 390, 651, 855
Alw21I	GWGCWC	2 cut(s)	51, 857
Alw26I	GTCTC	1 cut(s)	900
AlwI	GGATC	3 cut(s)	579, 592, 907
AlwNI	CAGNNNCTG	2 cut(s)	80, 379
AoxI	GGCC	3 cut(s)	6, 40, 451
ApeKI	GCWGC	3 cut(s)	64, 874, 1014
ApoI	RAATTY	4 cut(s)	331, 487, 866, 881
Asp700I	GAANNNNTTC	1 cut(s)	190
Asp718I	GGTACC	1 cut(s)	701
AspS9I	GGNCC	2 cut(s)	504, 523
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	2 cut(s)	504, 523
BamHI	GGATCC	1 cut(s)	584
BanI	GGYRCC	2 cut(s)	701, 1007
BanII	GRGCYC	2 cut(s)	51, 857
Bbv12I	GWGCWC	2 cut(s)	51, 857
BbvI	GCAGC	3 cut(s)	76, 861, 1001
BccI	CCATC	4 cut(s)	50, 253, 353, 998
BciT130I	CCWGG	3 cut(s)	111, 589, 1085
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	900
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	4 cut(s)	306, 495, 528, 579
BfmI	CTRYAG	1 cut(s)	847
BisI	GCNGC	3 cut(s)	65, 875, 1015
BlsI	GCNGC	3 cut(s)	66, 876, 1016
Bme1390I	CCNGG	3 cut(s)	111, 589, 1085
Bme18I	GGWCC	2 cut(s)	504, 523
BmgT120I	GGNCC	2 cut(s)	504, 523
BmiI	GGNNCC	5 cut(s)	505, 525, 586, 703, 1009
BmrFI	CCNGG	3 cut(s)	111, 589, 1085
BmsI	GCATC	5 cut(s)	16, 51, 86, 106, 754
BpmI	CTGGAG	2 cut(s)	231, 798
Bpu10I	CCTNAGC	1 cut(s)	31
BpuEI	CTTGAG	3 cut(s)	35, 700, 938
BsaBI	GATNNNNATC	1 cut(s)	1079
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse118I	RCCGGY	1 cut(s)	1010
Bse1I	ACTGG	3 cut(s)	487, 578, 781
Bse8I	GATNNNNATC	1 cut(s)	1079
BseBI	CCWGG	3 cut(s)	111, 589, 1085
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	6 cut(s)	61, 66, 121, 769, 958, 1080
BseJI	GATNNNNATC	1 cut(s)	1079
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	2 cut(s)	760, 1058
BseNI	ACTGG	3 cut(s)	487, 578, 781
BseXI	GCAGC	3 cut(s)	76, 861, 1001
BshFI	GGCC	3 cut(s)	8, 42, 453
BshNI	GGYRCC	2 cut(s)	701, 1007
BsiHKAI	GWGCWC	2 cut(s)	51, 857
BsiSI	CCGG	1 cut(s)	1011
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	900
BsnI	GGCC	3 cut(s)	8, 42, 453
Bsp1286I	GDGCHC	2 cut(s)	51, 857
Bsp143I	GATC	3 cut(s)	226, 584, 912
BspANI	GGCC	3 cut(s)	8, 42, 453
BspCNI	CTCAG	2 cut(s)	759, 1059
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	5 cut(s)	505, 525, 586, 703, 1009
BspMAI	CTGCAG	1 cut(s)	851
BspPI	GGATC	3 cut(s)	579, 592, 907
BspT107I	GGYRCC	2 cut(s)	701, 1007
BsrFI	RCCGGY	1 cut(s)	1010
BsrI	ACTGG	3 cut(s)	487, 578, 781
BssAI	RCCGGY	1 cut(s)	1010
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	3 cut(s)	226, 584, 912
Bst2UI	CCWGG	3 cut(s)	111, 589, 1085
Bst4CI	ACNGT	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	1014
BstDEI	CTNAG	6 cut(s)	31, 133, 218, 341, 746, 1067
BstF5I	GGATG	6 cut(s)	61, 66, 121, 769, 958, 1080
BstKTI	GATC	3 cut(s)	229, 587, 915
BstMAI	GTCTC	1 cut(s)	900
BstMBI	GATC	3 cut(s)	226, 584, 912
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 1014
BstNI	CCWGG	3 cut(s)	111, 589, 1085
BstSCI	CCNGG	3 cut(s)	109, 587, 1083
BstSFI	CTRYAG	1 cut(s)	847
BstV1I	GCAGC	3 cut(s)	76, 861, 1001
BstX2I	RGATCY	2 cut(s)	584, 912
BstYI	RGATCY	2 cut(s)	584, 912
BsuRI	GGCC	3 cut(s)	8, 42, 453
BtsCI	GGATG	6 cut(s)	61, 66, 121, 769, 958, 1080
BtsI	GCAGTG	1 cut(s)	907
BtsIMutI	CAGTG	2 cut(s)	331, 907
CaiI	CAGNNNCTG	2 cut(s)	80, 379
CciI	TCATGA	1 cut(s)	859
Cfr10I	RCCGGY	1 cut(s)	1010
Cfr13I	GGNCC	2 cut(s)	504, 523
Csp6I	GTAC	4 cut(s)	145, 571, 640, 702
CviAII	CATG	6 cut(s)	474, 769, 786, 860, 892, 931
CviQI	GTAC	4 cut(s)	145, 571, 640, 702
DdeI	CTNAG	6 cut(s)	31, 133, 218, 341, 746, 1067
DpnI	GATC	3 cut(s)	228, 586, 914
DpnII	GATC	3 cut(s)	226, 584, 912
DraIII	CACNNNGTG	1 cut(s)	600
Ecl136II	GAGCTC	2 cut(s)	49, 855
Eco147I	AGGCCT	2 cut(s)	8, 453
Eco24I	GRGCYC	2 cut(s)	51, 857
Eco47I	GGWCC	2 cut(s)	504, 523
Eco53kI	GAGCTC	2 cut(s)	49, 855
EcoICRI	GAGCTC	2 cut(s)	49, 855
EcoO109I	RGGNCCY	1 cut(s)	504
EcoRII	CCWGG	3 cut(s)	109, 587, 1083
EcoT38I	GRGCYC	2 cut(s)	51, 857
FaeI	CATG	6 cut(s)	477, 772, 789, 863, 895, 934
FalI	AAGNNNNNCTT	4 cut(s)	112, 144, 629, 661
FatI	CATG	6 cut(s)	473, 768, 785, 859, 891, 930
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	3 cut(s)	65, 875, 1015
FokI	GGATG	6 cut(s)	68, 73, 128, 776, 965, 1067
FriOI	GRGCYC	2 cut(s)	51, 857
Fsp4HI	GCNGC	3 cut(s)	65, 875, 1015
FspBI	CTAG	4 cut(s)	306, 495, 528, 579
GluI	GCNGC	3 cut(s)	65, 875, 1015
GsuI	CTGGAG	2 cut(s)	231, 798
HaeIII	GGCC	3 cut(s)	8, 42, 453
HapII	CCGG	1 cut(s)	1011
Hin1II	CATG	6 cut(s)	477, 772, 789, 863, 895, 934
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	8 cut(s)	14, 99, 196, 463, 720, 906, 934, 1088
HpaII	CCGG	1 cut(s)	1011
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	2 cut(s)	743, 774
Hpy188I	TCNGA	6 cut(s)	13, 25, 749, 758, 939, 1068
Hpy188III	TCNNGA	5 cut(s)	200, 210, 320, 860, 910
Hpy8I	GTNNAC	2 cut(s)	743, 774
HpyAV	CCTTC	3 cut(s)	731, 1021, 1025
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	6 cut(s)	64, 119, 627, 789, 849, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 1014
HpyF3I	CTNAG	6 cut(s)	31, 133, 218, 341, 746, 1067
Hsp92II	CATG	6 cut(s)	477, 772, 789, 863, 895, 934
KpnI	GGTACC	1 cut(s)	705
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	226, 584, 912
LmnI	GCTCC	3 cut(s)	376, 852, 1034
Lsp1109I	GCAGC	3 cut(s)	76, 861, 1001
LweI	GCATC	5 cut(s)	16, 51, 86, 106, 754
MaeI	CTAG	4 cut(s)	306, 495, 528, 579
MaeIII	GTNAC	2 cut(s)	122, 629
MalI	GATC	3 cut(s)	228, 586, 914
MboI	GATC	3 cut(s)	226, 584, 912
MboII	GAAGA	5 cut(s)	256, 268, 308, 746, 786
MfeI	CAATTG	1 cut(s)	457
MflI	RGATCY	2 cut(s)	584, 912
MhlI	GDGCHC	2 cut(s)	51, 857
MlyI	GAGTC	4 cut(s)	8, 457, 714, 928
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	5 cut(s)	19, 464, 554, 743, 1012
MroXI	GAANNNNTTC	1 cut(s)	190
MseI	TTAA	6 cut(s)	105, 288, 438, 537, 728, 1126
MspI	CCGG	1 cut(s)	1011
MspR9I	CCNGG	3 cut(s)	111, 589, 1085
MunI	CAATTG	1 cut(s)	457
MvaI	CCWGG	3 cut(s)	111, 589, 1085
MwoI	GCNNNNNNNGC	2 cut(s)	302, 1014
NdeII	GATC	3 cut(s)	226, 584, 912
NlaIII	CATG	6 cut(s)	477, 772, 789, 863, 895, 934
NlaIV	GGNNCC	5 cut(s)	505, 525, 586, 703, 1009
PagI	TCATGA	1 cut(s)	859
PceI	AGGCCT	2 cut(s)	8, 453
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	4 cut(s)	99, 196, 906, 1088
PfoI	TCCNGGA	1 cut(s)	1083
PkrI	GCNGC	3 cut(s)	66, 876, 1016
PleI	GAGTC	4 cut(s)	8, 457, 714, 928
PpsI	GAGTC	4 cut(s)	8, 457, 714, 928
PpuMI	RGGWCCY	1 cut(s)	504
Psp124BI	GAGCTC	2 cut(s)	51, 857
Psp5II	RGGWCCY	1 cut(s)	504
Psp6I	CCWGG	3 cut(s)	109, 587, 1083
PspGI	CCWGG	3 cut(s)	109, 587, 1083
PspN4I	GGNNCC	5 cut(s)	505, 525, 586, 703, 1009
PspPI	GGNCC	2 cut(s)	504, 523
PspPPI	RGGWCCY	1 cut(s)	504
PstI	CTGCAG	1 cut(s)	851
PstNI	CAGNNNCTG	2 cut(s)	80, 379
PsuI	RGATCY	2 cut(s)	584, 912
RsaI	GTAC	4 cut(s)	146, 572, 641, 703
RsaNI	GTAC	4 cut(s)	145, 571, 640, 702
SacI	GAGCTC	2 cut(s)	51, 857
SaqAI	TTAA	6 cut(s)	105, 288, 438, 537, 728, 1126
SatI	GCNGC	3 cut(s)	65, 875, 1015
Sau3AI	GATC	3 cut(s)	226, 584, 912
Sau96I	GGNCC	2 cut(s)	504, 523
SchI	GAGTC	4 cut(s)	8, 457, 714, 928
ScrFI	CCNGG	3 cut(s)	111, 589, 1085
SduI	GDGCHC	2 cut(s)	51, 857
SfaNI	GCATC	5 cut(s)	16, 51, 86, 106, 754
SfcI	CTRYAG	1 cut(s)	847
SinI	GGWCC	2 cut(s)	504, 523
SmlI	CTYRAG	3 cut(s)	50, 679, 917
SmoI	CTYRAG	3 cut(s)	50, 679, 917
SpeI	ACTAGT	1 cut(s)	578
SseBI	AGGCCT	2 cut(s)	8, 453
SspMI	CTAG	4 cut(s)	306, 495, 528, 579
SstI	GAGCTC	2 cut(s)	51, 857
StuI	AGGCCT	2 cut(s)	8, 453
StyD4I	CCNGG	3 cut(s)	109, 587, 1083
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	1 cut(s)	194
TatI	WGTACW	2 cut(s)	570, 639
TfiI	GAWTC	4 cut(s)	99, 196, 906, 1088
Tru1I	TTAA	6 cut(s)	105, 288, 438, 537, 728, 1126
Tru9I	TTAA	6 cut(s)	105, 288, 438, 537, 728, 1126
TscAI	CASTG	2 cut(s)	331, 907
TseI	GCWGC	3 cut(s)	64, 874, 1014
TspDTI	ATGAA	7 cut(s)	174, 440, 684, 747, 774, 876, 939
TspRI	CASTG	2 cut(s)	331, 907
VpaK11BI	GGWCC	2 cut(s)	504, 523
XapI	RAATTY	4 cut(s)	331, 487, 866, 881
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	4 cut(s)	306, 495, 528, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.