Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001316

Physical Location & Seq

Genomic Coordinates Reverse (-)

58104155 .. 58113081

Gene Structure 8927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG410400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGAAATCGAAGGCCATCATAGACAGGATCATACTCGTTTGTATTTTGTGCTGCACACTCTTGATGGAGGACTCTGACTCTCAATCAGATACCTTAGCACAAGGCCAAGAGCTCAAGGATGGGATGCAGCTTTTTTCAGCATCTGGGATTTTCAGGTTAGGATTCTTTAAGCCTGGGAATGCTAGTAACTCTTACTTGGGTATATGGTACAACAGAAATAATGAAAAAGCAGTATGGGTTGCCAACCGAAACAATCCGATTCTTGACAATTCTGGAGTTCTTAGAATTGATCAGTTTGGTAACTTGAAGATTACACAGAAGATGGTGGATGATATTGTACTATATTCAGTTAAAGAAGCAATCAATGCCAGTGCTATTCTTCTTGACAGTGGAAATTTTGTGCTTAGTGAGTTGAACGCTGATGGGTCTATAAAGCAGGAGCTGTGGCAAAGCTTTGATTATCCAACCGACACACTTTTGCCAAAAATGAAGTTGGGATTTAATAGAAAAACTGGCCTGAATTGGACTCTCAAATCATGGAGAACTGGAAATTTGCCAAGCATAGGGTCCTTTACACTTGGTTTGGACCCTAGTGGTGTTAAACAAATGGTCATTTCTTGGAGAGGAAATCTGTACTGGACTAGTGGATCCTGGCACACTTGGTGCTTCAGCCTTACAGATGAGTTTTGCAGTAACTATAAGTACAACTTTAGCTACATATCAAATGAGAATGAAACATACTTGAGTTATTCAGTAGATAAAGGTACCACTATTTTCCCAAGACTCCTGTTAAATGAAGAAGGTGAACTCAGAGGTTTCGGAATGGATGCCATGTTTACAGGAGTTTCATGCACTTCTTCCACCTACTCTACCTTGAAAAATGGGTGTGTTGAGCAAAGGCAACCAGACTGCAGGAGCTCTCATGACAAATTCGTGCGAAAACTTGGTGTCATGTCTCGCAGTGGAATCAAGATCCTTGAGAATGAAAACATGACTCTGATTGATTGTTGGGATGTTTGCTTCAAAATGTGTTCTTGTCTTGCTTATGCTTCTGCAAATGATGATGGCACCAGCTGCGAGATTTGGAAGAAAGGGGCAAGTTTCACACAAAACAATTTGGGTAGTCTGAGAGAGATACACATCCTGGAATCCAAAGTAAAGAAGTGGTGGATATGGCTACTCATTTTGGTGGGCGGAACTGCACTTTTTCCTTTCCTTTGCTCTTCCTGCTATGTACTATGGAAAAAATCAAAATCAAAAGGTACTCACTCAATGGAACAGAATATGCTCTTATATGAACTTGGTGAAGGGAGAAAACACCAGAAAGATGGAAACAGAAACAATAATGAGTTGCAGTTATTCAGTTTTGATACCGTTGCTACTGCTACCAACTGTTTCTCATCAACAAATAAGCTAGGAGAAGGCGGATTTGGACCAGTTTATAAGGTACAATTTATACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

487

Amino Acids

54.89

Weight (kDa)

8.04

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	78 - 181	6.6e-30	D-mannose binding lectin
PAN_2	PF08276	304 - 364	2.3e-07	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030
fragaria_vesca	FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370
prunus_persica	Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0138071
rosa_laevigata	RLG00000019698 RLG00000019716 RLG00000019717 RLG00000019722
rosa_multiflora	Rmu_sc0008250.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106510 Rroxscaffold_2G00106540
rosa_rugosa	Rorug02G0348700 Rorug02G0349200 Rorug02G0349300 Rorug02G0349300 Rorug02G0349400
rosa_samantha	Rh2AG395500 Rh2AG396100 Rh2BG402500 Rh2BG402600 Rh2BG410400 Rh2CG382000 Rh2CG382600 Rh2DG417300 Rh2DG417400 Rh2DG417900
rosa_wichuraiana	Rw2G032340 Rw2G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1443
Acc65I	GGTACC	1 cut(s)	764
AccB1I	GGYRCC	2 cut(s)	764, 1067
AciI	CCGC	2 cut(s)	1194, 1425
AclWI	GGATC	4 cut(s)	35, 642, 655, 967
AcsI	RAATTY	3 cut(s)	394, 550, 929
AcuI	CTGAAG	1 cut(s)	652
AdeI	CACNNNGTG	1 cut(s)	663
AfaI	GTAC	8 cut(s)	209, 339, 635, 704, 766, 1236, 1264, 1449
AfiI	CCNNNNNNNGG	1 cut(s)	563
AgsI	TTSAA	4 cut(s)	307, 415, 877, 1024
AhlI	ACTAGT	1 cut(s)	641
AjnI	CCWGG	3 cut(s)	172, 650, 1143
AjuI	GAANNNNNNNTTGG	2 cut(s)	1413, 1445
AluBI	AGCT	8 cut(s)	112, 130, 442, 453, 714, 918, 1074, 1414
AluI	AGCT	8 cut(s)	112, 130, 442, 453, 714, 918, 1074, 1414
Alw21I	GWGCWC	2 cut(s)	114, 920
Alw26I	GTCTC	1 cut(s)	960
AlwI	GGATC	4 cut(s)	35, 642, 655, 967
AlwNI	CAGNNNCTG	2 cut(s)	143, 442
AoxI	GGCC	3 cut(s)	12, 103, 514
ApeKI	GCWGC	3 cut(s)	51, 127, 1074
ApoI	RAATTY	3 cut(s)	394, 550, 929
Asp718I	GGTACC	1 cut(s)	764
AspS9I	GGNCC	3 cut(s)	567, 586, 1433
AsuHPI	GGTGA	2 cut(s)	815, 1316
AvaII	GGWCC	3 cut(s)	567, 586, 1433
BamHI	GGATCC	1 cut(s)	647
BanI	GGYRCC	2 cut(s)	764, 1067
BanII	GRGCYC	2 cut(s)	114, 920
Bbv12I	GWGCWC	2 cut(s)	114, 920
BbvI	GCAGC	3 cut(s)	38, 139, 1061
BccI	CCATC	7 cut(s)	23, 58, 113, 316, 416, 1058, 1322
BciT130I	CCWGG	3 cut(s)	174, 652, 1145
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	960
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	4 cut(s)	183, 591, 642, 1415
BfmI	CTRYAG	1 cut(s)	910
BisI	GCNGC	3 cut(s)	52, 128, 1075
BlsI	GCNGC	3 cut(s)	53, 129, 1076
Bme1390I	CCNGG	3 cut(s)	174, 652, 1145
Bme18I	GGWCC	3 cut(s)	567, 586, 1433
BmgT120I	GGNCC	3 cut(s)	567, 586, 1433
BmiI	GGNNCC	5 cut(s)	568, 588, 649, 766, 1069
BmrFI	CCNGG	3 cut(s)	174, 652, 1145
BmsI	GCATC	3 cut(s)	114, 149, 817
BpmI	CTGGAG	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	94
BpuEI	CTTGAG	3 cut(s)	98, 763, 998
BsaBI	GATNNNNATC	1 cut(s)	1139
BsaJI	CCNNGG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	5 cut(s)	369, 517, 550, 641, 1436
Bse8I	GATNNNNATC	1 cut(s)	1139
BseBI	CCWGG	3 cut(s)	174, 652, 1145
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	6 cut(s)	124, 129, 334, 832, 1018, 1140
BseJI	GATNNNNATC	1 cut(s)	1139
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMII	CTCAG	2 cut(s)	823, 1118
BseNI	ACTGG	5 cut(s)	369, 517, 550, 641, 1436
BseXI	GCAGC	3 cut(s)	38, 139, 1061
BsgI	GTGCAG	2 cut(s)	37, 1185
BshFI	GGCC	3 cut(s)	14, 105, 516
BshNI	GGYRCC	2 cut(s)	764, 1067
BsiHKAI	GWGCWC	2 cut(s)	114, 920
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	1 cut(s)	960
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	3 cut(s)	14, 105, 516
Bsp1286I	GDGCHC	2 cut(s)	114, 920
Bsp143I	GATC	4 cut(s)	27, 289, 647, 972
BspACI	CCGC	2 cut(s)	1194, 1425
BspANI	GGCC	3 cut(s)	14, 105, 516
BspCNI	CTCAG	2 cut(s)	822, 1119
BspHI	TCATGA	1 cut(s)	922
BspLI	GGNNCC	5 cut(s)	568, 588, 649, 766, 1069
BspMAI	CTGCAG	1 cut(s)	914
BspPI	GGATC	4 cut(s)	35, 642, 655, 967
BspQI	GCTCTTC	1 cut(s)	1228
BspT107I	GGYRCC	2 cut(s)	764, 1067
BsrI	ACTGG	5 cut(s)	369, 517, 550, 641, 1436
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	4 cut(s)	27, 289, 647, 972
Bst2UI	CCWGG	3 cut(s)	174, 652, 1145
Bst4CI	ACNGT	3 cut(s)	389, 1375, 1394
Bst6I	CTCTTC	1 cut(s)	1228
BstAPI	GCANNNNNTGC	2 cut(s)	365, 1074
BstDEI	CTNAG	5 cut(s)	94, 281, 404, 809, 1127
BstF5I	GGATG	6 cut(s)	124, 129, 334, 832, 1018, 1140
BstKTI	GATC	4 cut(s)	30, 292, 650, 975
BstMAI	GTCTC	1 cut(s)	960
BstMBI	GATC	4 cut(s)	27, 289, 647, 972
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 1074, 1227
BstNI	CCWGG	3 cut(s)	174, 652, 1145
BstSCI	CCNGG	3 cut(s)	172, 650, 1143
BstSFI	CTRYAG	1 cut(s)	910
BstV1I	GCAGC	3 cut(s)	38, 139, 1061
BstX2I	RGATCY	2 cut(s)	647, 972
BstXI	CCANNNNNNTGG	1 cut(s)	1328
BstYI	RGATCY	2 cut(s)	647, 972
BsuRI	GGCC	3 cut(s)	14, 105, 516
BtsCI	GGATG	6 cut(s)	124, 129, 334, 832, 1018, 1140
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	3 cut(s)	376, 394, 967
CaiI	CAGNNNCTG	2 cut(s)	143, 442
CciI	TCATGA	1 cut(s)	922
Cfr13I	GGNCC	3 cut(s)	567, 586, 1433
Csp6I	GTAC	8 cut(s)	208, 338, 634, 703, 765, 1235, 1263, 1448
CviAII	CATG	6 cut(s)	537, 832, 849, 923, 952, 991
CviQI	GTAC	8 cut(s)	208, 338, 634, 703, 765, 1235, 1263, 1448
DdeI	CTNAG	5 cut(s)	94, 281, 404, 809, 1127
DpnI	GATC	4 cut(s)	29, 291, 649, 974
DpnII	GATC	4 cut(s)	27, 289, 647, 972
DraIII	CACNNNGTG	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	1228
EarI	CTCTTC	1 cut(s)	1228
EciI	GGCGGA	2 cut(s)	1209, 1440
Ecl136II	GAGCTC	2 cut(s)	112, 918
Eco24I	GRGCYC	2 cut(s)	114, 920
Eco47I	GGWCC	3 cut(s)	567, 586, 1433
Eco53kI	GAGCTC	2 cut(s)	112, 918
Eco57I	CTGAAG	1 cut(s)	652
EcoICRI	GAGCTC	2 cut(s)	112, 918
EcoO109I	RGGNCCY	1 cut(s)	567
EcoRII	CCWGG	3 cut(s)	172, 650, 1143
EcoT38I	GRGCYC	2 cut(s)	114, 920
FaeI	CATG	6 cut(s)	540, 835, 852, 926, 955, 994
FalI	AAGNNNNNCTT	2 cut(s)	692, 724
FatI	CATG	6 cut(s)	536, 831, 848, 922, 951, 990
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	52, 128, 1075
FokI	GGATG	6 cut(s)	131, 136, 341, 839, 1025, 1127
FriOI	GRGCYC	2 cut(s)	114, 920
Fsp4HI	GCNGC	3 cut(s)	52, 128, 1075
FspBI	CTAG	4 cut(s)	183, 591, 642, 1415
GluI	GCNGC	3 cut(s)	52, 128, 1075
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	14, 105, 516
Hin1II	CATG	6 cut(s)	540, 835, 852, 926, 955, 994
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	9 cut(s)	71, 77, 162, 259, 526, 783, 966, 994, 1148
HphI	GGTGA	2 cut(s)	815, 1316
Hpy166II	GTNNAC	2 cut(s)	806, 837
Hpy188I	TCNGA	7 cut(s)	76, 88, 258, 812, 821, 999, 1128
Hpy188III	TCNNGA	6 cut(s)	61, 263, 273, 383, 923, 970
Hpy8I	GTNNAC	2 cut(s)	806, 837
HpyAV	CCTTC	4 cut(s)	4, 794, 1301, 1415
HpyCH4III	ACNGT	3 cut(s)	389, 1375, 1394
HpyCH4V	TGCA	8 cut(s)	54, 127, 690, 852, 912, 1055, 1202, 1354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 1074, 1227
HpyF3I	CTNAG	5 cut(s)	94, 281, 404, 809, 1127
Hsp92II	CATG	6 cut(s)	540, 835, 852, 926, 955, 994
KpnI	GGTACC	1 cut(s)	768
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	27, 289, 647, 972
LguI	GCTCTTC	1 cut(s)	1228
LmnI	GCTCC	2 cut(s)	439, 915
Lsp1109I	GCAGC	3 cut(s)	38, 139, 1061
LweI	GCATC	3 cut(s)	114, 149, 817
MaeI	CTAG	4 cut(s)	183, 591, 642, 1415
MaeIII	GTNAC	3 cut(s)	185, 299, 692
MalI	GATC	4 cut(s)	29, 291, 649, 974
MboI	GATC	4 cut(s)	27, 289, 647, 972
MboII	GAAGA	7 cut(s)	319, 331, 371, 809, 849, 1099, 1215
MflI	RGATCY	2 cut(s)	647, 972
MhlI	GDGCHC	2 cut(s)	114, 920
MluCI	AATT	8 cut(s)	268, 285, 394, 520, 550, 929, 1114, 1451
MlyI	GAGTC	5 cut(s)	65, 71, 520, 777, 988
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	3 cut(s)	61, 617, 806
MseI	TTAA	5 cut(s)	168, 351, 501, 600, 791
MslI	CAYNNNNRTG	1 cut(s)	1187
MspA1I	CMGCKG	1 cut(s)	1074
MspR9I	CCNGG	3 cut(s)	174, 652, 1145
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	3 cut(s)	174, 652, 1145
MwoI	GCNNNNNNNGC	3 cut(s)	365, 1074, 1227
NdeII	GATC	4 cut(s)	27, 289, 647, 972
NlaIII	CATG	6 cut(s)	540, 835, 852, 926, 955, 994
NlaIV	GGNNCC	5 cut(s)	568, 588, 649, 766, 1069
PagI	TCATGA	1 cut(s)	922
PciSI	GCTCTTC	1 cut(s)	1228
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	4 cut(s)	162, 259, 966, 1148
PfoI	TCCNGGA	1 cut(s)	1143
PkrI	GCNGC	3 cut(s)	53, 129, 1076
PleI	GAGTC	5 cut(s)	65, 71, 520, 777, 988
PpsI	GAGTC	5 cut(s)	65, 71, 520, 777, 988
PpuMI	RGGWCCY	1 cut(s)	567
PsiI	TTATAA	1 cut(s)	1443
Psp124BI	GAGCTC	2 cut(s)	114, 920
Psp5II	RGGWCCY	1 cut(s)	567
Psp6I	CCWGG	3 cut(s)	172, 650, 1143
PspGI	CCWGG	3 cut(s)	172, 650, 1143
PspN4I	GGNNCC	5 cut(s)	568, 588, 649, 766, 1069
PspPI	GGNCC	3 cut(s)	567, 586, 1433
PspPPI	RGGWCCY	1 cut(s)	567
PstI	CTGCAG	1 cut(s)	914
PstNI	CAGNNNCTG	2 cut(s)	143, 442
PsuI	RGATCY	2 cut(s)	647, 972
PvuII	CAGCTG	1 cut(s)	1074
RsaI	GTAC	8 cut(s)	209, 339, 635, 704, 766, 1236, 1264, 1449
RsaNI	GTAC	8 cut(s)	208, 338, 634, 703, 765, 1235, 1263, 1448
RseI	CAYNNNNRTG	1 cut(s)	1187
SacI	GAGCTC	2 cut(s)	114, 920
SapI	GCTCTTC	1 cut(s)	1228
SaqAI	TTAA	5 cut(s)	168, 351, 501, 600, 791
SatI	GCNGC	3 cut(s)	52, 128, 1075
Sau3AI	GATC	4 cut(s)	27, 289, 647, 972
Sau96I	GGNCC	3 cut(s)	567, 586, 1433
SchI	GAGTC	5 cut(s)	65, 71, 520, 777, 988
ScrFI	CCNGG	3 cut(s)	174, 652, 1145
SduI	GDGCHC	2 cut(s)	114, 920
SfaNI	GCATC	3 cut(s)	114, 149, 817
SfcI	CTRYAG	1 cut(s)	910
SinI	GGWCC	3 cut(s)	567, 586, 1433
SmiMI	CAYNNNNRTG	1 cut(s)	1187
SmlI	CTYRAG	3 cut(s)	113, 742, 977
SmoI	CTYRAG	3 cut(s)	113, 742, 977
SpeI	ACTAGT	1 cut(s)	641
Sse9I	AATT	8 cut(s)	268, 285, 394, 520, 550, 929, 1114, 1451
SsiI	CCGC	2 cut(s)	1194, 1425
SspMI	CTAG	4 cut(s)	183, 591, 642, 1415
SstI	GAGCTC	2 cut(s)	114, 920
StyD4I	CCNGG	3 cut(s)	172, 650, 1143
TaaI	ACNGT	3 cut(s)	389, 1375, 1394
TaqI	TCGA	1 cut(s)	8
TasI	AATT	8 cut(s)	268, 285, 394, 520, 550, 929, 1114, 1451
TatI	WGTACW	4 cut(s)	337, 633, 702, 1234
TfiI	GAWTC	4 cut(s)	162, 259, 966, 1148
Tru1I	TTAA	5 cut(s)	168, 351, 501, 600, 791
Tru9I	TTAA	5 cut(s)	168, 351, 501, 600, 791
TscAI	CASTG	3 cut(s)	376, 394, 967
TseI	GCWGC	3 cut(s)	51, 127, 1074
TspDTI	ATGAA	8 cut(s)	17, 237, 503, 747, 810, 837, 999, 1311
TspRI	CASTG	3 cut(s)	376, 394, 967
VpaK11BI	GGWCC	3 cut(s)	567, 586, 1433
XapI	RAATTY	3 cut(s)	394, 550, 929
XspI	CTAG	4 cut(s)	183, 591, 642, 1415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.