Rh2BG402500

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001316
Physical Location & Seq
Forward (+)
57091254 .. 57091835
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG402500.1

Sequence Viewer

Length: 582 bp
ATGGTCACTTCTTGGAGAGGAAATCTGTACTGGACTAGAGGATCCTGGCACACTTGGTCCTTCAGCCTTACATATGAGTTTTGCAGTAACTATAAGTACAACTTTAGCTACATATCAAATGAGAATGAAACATACTTGAGTTATTCAGTAGATAAAGGTACCACTATTTTCCCGAGACTCTTGTTAAATGAAGAAGGTGAACTCAGAGGTTACGGGATAGATGCCATGTTTACAGGAGTTTCATGCACTTCTTCCATCAACTCTACCTTGAAAAATGGGTGTGCTGAGCAAAGGCTACTAGGCTGTAGGAGCTCTCATGACAAATTTGTGCCAAAACTTGGTGTCATGTCTGACAGTGGAATCAAGATCCTTGAGAATGACAACATGACTCTGATTGATTGTTGGGATGTTTGCTTCAAAATGTGTTCTTGTCTTGCTTATGCTTCTGCAAATGATGATGGCACCGGCTGTGAGATTTGGAAGAAAGGGGCAAGTTTCACACAAAACAATTTGGGCAGTCTGAGAGAGATATACATCCGGGAATCCAAAGTTAAATTATCTACATTCTATGACATGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

193

Amino Acids

21.92

Weight (kDa)

5.72

Isoelectric Point (pI)

25.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 102 - 162 7.4e-09 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 2 cut(s) 158, 461
AccB7I CCANNNNNTGG 1 cut(s) 338
AclWI GGATC 3 cut(s) 36, 49, 361
AcsI RAATTY 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 46
AfaI GTAC 3 cut(s) 29, 98, 160
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 2 cut(s) 271, 418
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 2 cut(s) 108, 312
AluI AGCT 2 cut(s) 108, 312
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 3 cut(s) 36, 49, 361
Ama87I CYCGRG 1 cut(s) 172
ApoI RAATTY 1 cut(s) 323
Asp718I GGTACC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 539
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 172
AvaII GGWCC 1 cut(s) 57
BamHI GGATCC 1 cut(s) 41
BanI GGYRCC 2 cut(s) 158, 461
BanII GRGCYC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 314
BccI CCATC 2 cut(s) 263, 452
BciT130I CCWGG 1 cut(s) 46
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 36, 299
BfmI CTRYAG 1 cut(s) 304
BlpI GCTNAGC 1 cut(s) 285
Bme1390I CCNGG 2 cut(s) 46, 539
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 3 cut(s) 43, 160, 463
BmrFI CCNGG 2 cut(s) 46, 539
BmsI GCATC 1 cut(s) 211
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 157, 392
BpuMI CCSGG 1 cut(s) 539
BsaBI GATNNNNATC 1 cut(s) 533
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 533
BseBI CCWGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 412, 534
BseJI GATNNNNATC 1 cut(s) 533
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 3 cut(s) 217, 276, 512
BseNI ACTGG 1 cut(s) 35
BshNI GGYRCC 2 cut(s) 158, 461
BsiHKAI GWGCWC 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 2 cut(s) 465, 538
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 41, 366
Bsp1720I GCTNAGC 1 cut(s) 285
BspCNI CTCAG 3 cut(s) 216, 277, 513
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 3 cut(s) 43, 160, 463
BspPI GGATC 3 cut(s) 36, 49, 361
BspT107I GGYRCC 2 cut(s) 158, 461
BsrFI RCCGGY 1 cut(s) 464
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 464
BssMI GATC 2 cut(s) 41, 366
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 356
BstDEI CTNAG 3 cut(s) 203, 285, 521
BstF5I GGATG 2 cut(s) 412, 534
BstKTI GATC 2 cut(s) 44, 369
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 41, 366
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 44, 537
BstSFI CTRYAG 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 41, 366
BstYI RGATCY 2 cut(s) 41, 366
BtsCI GGATG 2 cut(s) 412, 534
BtsIMutI CAGTG 1 cut(s) 361
CciI TCATGA 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 3 cut(s) 28, 97, 159
CviAII CATG 6 cut(s) 226, 243, 317, 346, 385, 574
CviJI RGCY 6 cut(s) 66, 108, 295, 303, 312, 468
CviKI_1 RGCY 6 cut(s) 66, 108, 295, 303, 312, 468
CviQI GTAC 3 cut(s) 28, 97, 159
DdeI CTNAG 3 cut(s) 203, 285, 521
DpnI GATC 2 cut(s) 43, 368
DpnII GATC 2 cut(s) 41, 366
Ecl136II GAGCTC 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 314
FaeI CATG 6 cut(s) 229, 246, 320, 349, 388, 577
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FatI CATG 6 cut(s) 225, 242, 316, 345, 384, 573
FauNDI CATATG 1 cut(s) 73
FokI GGATG 2 cut(s) 419, 521
FriOI GRGCYC 1 cut(s) 314
FspBI CTAG 2 cut(s) 36, 299
HapII CCGG 2 cut(s) 465, 538
Hin1II CATG 6 cut(s) 229, 246, 320, 349, 388, 577
HinfI GANTC 4 cut(s) 177, 360, 388, 542
HpaII CCGG 2 cut(s) 465, 538
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 200, 231
Hpy188I TCNGA 4 cut(s) 206, 352, 393, 522
Hpy188III TCNNGA 3 cut(s) 172, 317, 364
Hpy8I GTNNAC 2 cut(s) 200, 231
HpyAV CCTTC 2 cut(s) 70, 188
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 3 cut(s) 84, 246, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpyF3I CTNAG 3 cut(s) 203, 285, 521
Hsp92II CATG 6 cut(s) 229, 246, 320, 349, 388, 577
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 41, 366
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 6 cut(s) 16, 31, 58, 219, 478, 551
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 36, 299
MaeIII GTNAC 3 cut(s) 4, 86, 209
MalI GATC 2 cut(s) 43, 368
MboI GATC 2 cut(s) 41, 366
MboII GAAGA 3 cut(s) 203, 243, 493
MflI RGATCY 2 cut(s) 41, 366
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 3 cut(s) 323, 508, 554
MlyI GAGTC 2 cut(s) 171, 382
MnlI CCTC 3 cut(s) 11, 32, 200
MseI TTAA 3 cut(s) 185, 552, 580
MspI CCGG 2 cut(s) 465, 538
MspR9I CCNGG 2 cut(s) 46, 539
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 309
NciI CCSGG 1 cut(s) 539
NdeI CATATG 1 cut(s) 73
NdeII GATC 2 cut(s) 41, 366
NlaIII CATG 6 cut(s) 229, 246, 320, 349, 388, 577
NlaIV GGNNCC 3 cut(s) 43, 160, 463
NmuCI GTSAC 1 cut(s) 4
PagI TCATGA 1 cut(s) 316
PfeI GAWTC 2 cut(s) 360, 542
PflMI CCANNNNNTGG 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 537
PleI GAGTC 2 cut(s) 171, 382
PpsI GAGTC 2 cut(s) 171, 382
Psp124BI GAGCTC 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 3 cut(s) 43, 160, 463
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 2 cut(s) 41, 366
RsaI GTAC 3 cut(s) 29, 98, 160
RsaNI GTAC 3 cut(s) 28, 97, 159
SacI GAGCTC 1 cut(s) 314
SaqAI TTAA 3 cut(s) 185, 552, 580
Sau3AI GATC 2 cut(s) 41, 366
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 2 cut(s) 171, 382
ScrFI CCNGG 2 cut(s) 46, 539
SduI GDGCHC 1 cut(s) 314
SetI ASST 6 cut(s) 110, 160, 199, 211, 269, 314
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 304
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 136, 371
SmoI CTYRAG 2 cut(s) 136, 371
Sse9I AATT 3 cut(s) 323, 508, 554
SspMI CTAG 2 cut(s) 36, 299
SstI GAGCTC 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 44, 537
TaaI ACNGT 1 cut(s) 356
TasI AATT 3 cut(s) 323, 508, 554
TatI WGTACW 2 cut(s) 27, 96
TfiI GAWTC 2 cut(s) 360, 542
Tru1I TTAA 3 cut(s) 185, 552, 580
Tru9I TTAA 3 cut(s) 185, 552, 580
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 141, 204, 231
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 1 cut(s) 323
XspI CTAG 2 cut(s) 36, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.