Rh2BG402600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001316
Physical Location & Seq
Forward (+)
57092772 .. 57095474
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG402600.1

Sequence Viewer

Length: 1278 bp
ATGACCGACAGTGTATATAGGGGAAAGGAACATATCTCAGCCCCTTCCAAAAACACGTGGGAGACAACTCGGTCCAAAGCAGCCCCTTCCGACACCGACACCGACACCGACCGTTCCCCACTTTCTGGTGGTGGCTCCAAATCATGCACCACTGTATTCTTGAACAAGGCCTCCTCCTCACGGCCCCCAACATACACTTTTACGATCGGTCAACATCTGGAGGGTGATTATTACAAATGTACATTGACCAACGGACGGGACGATTGGGTCTGTCAAGTTGAACCATCTTGTCTAGTGCCAAAAGCCACTGTTCCTGAAATCCAGGCAGCCACATTGGTGAGTGACGGCTACATCACCAACAACACAAGAAGTGAGTACTCTTTGACGGTTTACTGTCGGGCTAAACTGGAGTACCCCAAAGGATCAGCATCACCACCAAGATTCGCCTTGGTTACAGAGTCCTTCGATTGCACATGGGCCACTTGGTTTCACAAACACTTGAGCCAGATTACAACAGCAAACAAGGACAAAGTAGCAGATCGAAGATCTGCTCTTCTTATCAGGAGTTTAATCTCTGGAGCTGATGATATGCTTGTCAATTCCTCAACCTCCCACAATATGGACCCCAACCACATATACATTGTTGGCAACTCAGTCAAATTCGCTCACTTTGACAAGGTAACAAGAAGTCGAAATGATCAACAGCAAAGCGTCTTTCAGCTTCTGAGAGCTTCTTTGCCACAGAATGTTCTAACTGGAGAGCTGTTACACTTCATTGGCCTACAAACAAACTGTACAAGAGAGGTATTCTTATTCTATAGGCTCCATCCAGGGATTTCCAATGGAGATGAAATGTGCTCCCTAAGACTTCACTCCTATGATATATCAAAAATTCAAGGACTTGATTTGGACAGAGAAATTTCCACAAAATCTAGAACCGCTGCCTATAGTTTAATTATGAATCAGGGGAGCCAGAATTGGCTGTCGAGGATTACCTCAACGAGGCTGAGAGCTTTGGGCTGCTACTCTCTTTATTTGAATAAGCGGAGACCCAAACCAGTGTCAGACTTTGTGAATTTCAGCCGGGCTGCTGTTGAGCATGCCAATGATCAAAAAACTATGGCTAATGATCCTATCTCTCAAGGTCGAATCATTAGTTATGAGGAAGTGGATGAGGAGCTAAACAATGCATGGCCTCAGTTTATGATAGTTTGGTTTGATTGCTGTGTTGATGATCTAGCCTACTACGGCAACATGTTTCATTTCTCTACACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

47.91

Weight (kDa)

7.16

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 70, 266
AccB7I CCANNNNNTGG 2 cut(s) 125, 619
AciI CCGC 2 cut(s) 939, 1045
AclWI GGATC 2 cut(s) 430, 1124
AcsI RAATTY 4 cut(s) 659, 891, 918, 1075
AcvI CACGTG 1 cut(s) 57
AfaI GTAC 4 cut(s) 241, 377, 413, 796
AfiI CCNNNNNNNGG 5 cut(s) 125, 180, 255, 619, 1002
AflIII ACRYGT 2 cut(s) 54, 1254
AgsI TTSAA 4 cut(s) 163, 281, 896, 1039
AjnI CCWGG 2 cut(s) 321, 829
AleI CACNNNNGTG 1 cut(s) 335
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 6 cut(s) 581, 721, 731, 763, 1013, 1180
AluI AGCT 6 cut(s) 581, 721, 731, 763, 1013, 1180
Alw21I GWGCWC 1 cut(s) 860
Alw26I GTCTC 2 cut(s) 56, 1042
AlwI GGATC 2 cut(s) 430, 1124
AlwNI CAGNNNCTG 1 cut(s) 724
AoxI GGCC 5 cut(s) 168, 182, 477, 778, 1193
ApeKI GCWGC 5 cut(s) 80, 326, 941, 1020, 1088
ApoI RAATTY 4 cut(s) 659, 891, 918, 1075
AspS9I GGNCC 4 cut(s) 72, 183, 477, 622
AsuC2I CCSGG 1 cut(s) 1085
AsuHPI GGTGA 4 cut(s) 236, 346, 349, 423
AvaII GGWCC 2 cut(s) 72, 622
BaeI ACNNNNGTAYC 2 cut(s) 395, 428
BbrPI CACGTG 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 860
BbvI GCAGC 5 cut(s) 92, 338, 928, 1007, 1075
BccI CCATC 2 cut(s) 292, 834
BceAI ACGGC 3 cut(s) 197, 361, 1264
BciT130I CCWGG 2 cut(s) 323, 831
BclI TGATCA 2 cut(s) 697, 1108
BcnI CCSGG 1 cut(s) 1085
BcoDI GTCTC 2 cut(s) 56, 1042
BfaI CTAG 3 cut(s) 293, 933, 1238
BfmI CTRYAG 2 cut(s) 817, 946
BglII AGATCT 1 cut(s) 545
BisI GCNGC 5 cut(s) 81, 327, 942, 1021, 1089
BlsI GCNGC 5 cut(s) 82, 328, 943, 1022, 1090
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 3 cut(s) 323, 831, 1085
Bme18I GGWCC 2 cut(s) 72, 622
BmgT120I GGNCC 4 cut(s) 72, 183, 477, 622
BmiI GGNNCC 5 cut(s) 136, 185, 624, 824, 971
BmrFI CCNGG 3 cut(s) 323, 831, 1085
BmsI GCATC 1 cut(s) 437
BpmI CTGGAG 4 cut(s) 239, 428, 597, 777
BpuEI CTTGAG 2 cut(s) 520, 1125
BpuMI CCSGG 1 cut(s) 1085
BsaAI YACGTR 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 1042
BsaJI CCNNGG 2 cut(s) 447, 830
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 180, 255, 619, 1002
Bse1I ACTGG 3 cut(s) 411, 760, 1058
Bse8I GATNNNNATC 1 cut(s) 427
BseBI CCWGG 2 cut(s) 323, 831
BseDI CCNNGG 2 cut(s) 447, 830
BseGI GGATG 2 cut(s) 826, 1177
BseJI GATNNNNATC 1 cut(s) 427
BseLI CCNNNNNNNGG 5 cut(s) 125, 180, 255, 619, 1002
BseMII CTCAG 5 cut(s) 51, 666, 716, 998, 1211
BseNI ACTGG 3 cut(s) 411, 760, 1058
BseRI GAGGAG 3 cut(s) 163, 166, 1190
BseXI GCAGC 5 cut(s) 92, 338, 928, 1007, 1075
Bsh1285I CGRYCG 2 cut(s) 112, 207
BshFI GGCC 5 cut(s) 170, 184, 479, 780, 1195
BsiEI CGRYCG 2 cut(s) 112, 207
BsiHKAI GWGCWC 1 cut(s) 860
BsiSI CCGG 1 cut(s) 1084
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 5 cut(s) 125, 180, 255, 619, 1002
BsmAI GTCTC 2 cut(s) 56, 1042
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 5 cut(s) 170, 184, 479, 780, 1195
Bso31I GGTCTC 1 cut(s) 1042
Bsp1286I GDGCHC 1 cut(s) 860
Bsp1407I TGTACA 2 cut(s) 239, 794
Bsp143I GATC 8 cut(s) 204, 422, 538, 545, 697, 1108, 1129, 1234
BspACI CCGC 2 cut(s) 939, 1045
BspANI GGCC 5 cut(s) 170, 184, 479, 780, 1195
BspCNI CTCAG 5 cut(s) 50, 665, 717, 999, 1210
BspLI GGNNCC 5 cut(s) 136, 185, 624, 824, 971
BspPI GGATC 2 cut(s) 430, 1124
BspQI GCTCTTC 1 cut(s) 558
BspTNI GGTCTC 1 cut(s) 1042
BsrGI TGTACA 2 cut(s) 239, 794
BsrI ACTGG 3 cut(s) 411, 760, 1058
BssECI CCNNGG 2 cut(s) 447, 830
BssMI GATC 8 cut(s) 204, 422, 538, 545, 697, 1108, 1129, 1234
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 323, 831
Bst4CI ACNGT 7 cut(s) 11, 113, 154, 310, 388, 395, 794
Bst6I CTCTTC 1 cut(s) 558
BstAUI TGTACA 2 cut(s) 239, 794
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 1101
BstDEI CTNAG 6 cut(s) 37, 652, 725, 863, 1007, 1197
BstENI CCTNNNNNAGG 1 cut(s) 1000
BstF5I GGATG 2 cut(s) 826, 1177
BstKTI GATC 8 cut(s) 207, 425, 541, 548, 700, 1111, 1132, 1237
BstMAI GTCTC 2 cut(s) 56, 1042
BstMBI GATC 8 cut(s) 204, 422, 538, 545, 697, 1108, 1129, 1234
BstMCI CGRYCG 2 cut(s) 112, 207
BstNI CCWGG 2 cut(s) 323, 831
BstNSI RCATGY 2 cut(s) 1103, 1258
BstSCI CCNGG 3 cut(s) 321, 829, 1083
BstSFI CTRYAG 2 cut(s) 817, 946
BstV1I GCAGC 5 cut(s) 92, 338, 928, 1007, 1075
BstX2I RGATCY 1 cut(s) 545
BstYI RGATCY 1 cut(s) 545
BsuRI GGCC 5 cut(s) 170, 184, 479, 780, 1195
BtsCI GGATG 2 cut(s) 826, 1177
BtsIMutI CAGTG 4 cut(s) 16, 150, 306, 1065
Cac8I GCNNGC 1 cut(s) 1101
CaiI CAGNNNCTG 1 cut(s) 724
Cfr13I GGNCC 4 cut(s) 72, 183, 477, 622
CseI GACGC 1 cut(s) 700
Csp6I GTAC 4 cut(s) 240, 376, 412, 795
CviAII CATG 5 cut(s) 144, 474, 1100, 1191, 1255
CviQI GTAC 4 cut(s) 240, 376, 412, 795
DdeI CTNAG 6 cut(s) 37, 652, 725, 863, 1007, 1197
DpnI GATC 8 cut(s) 206, 424, 540, 547, 699, 1110, 1131, 1236
DpnII GATC 8 cut(s) 204, 422, 538, 545, 697, 1108, 1129, 1234
DrdI GACNNNNNNGTC 2 cut(s) 70, 266
DseDI GACNNNNNNGTC 2 cut(s) 70, 266
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 447
Eco147I AGGCCT 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 1042
Eco47I GGWCC 2 cut(s) 72, 622
Eco72I CACGTG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 1000
EcoRII CCWGG 2 cut(s) 321, 829
EcoT14I CCWWGG 1 cut(s) 447
EcoT22I ATGCAT 1 cut(s) 1192
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 5 cut(s) 147, 477, 1103, 1194, 1258
FaqI GGGAC 1 cut(s) 272
FatI CATG 5 cut(s) 143, 473, 1099, 1190, 1254
FbaI TGATCA 2 cut(s) 697, 1108
Fnu4HI GCNGC 5 cut(s) 81, 327, 942, 1021, 1089
FokI GGATG 2 cut(s) 813, 1184
Fsp4HI GCNGC 5 cut(s) 81, 327, 942, 1021, 1089
FspBI CTAG 3 cut(s) 293, 933, 1238
GluI GCNGC 5 cut(s) 81, 327, 942, 1021, 1089
GsuI CTGGAG 4 cut(s) 239, 428, 597, 777
HaeIII GGCC 5 cut(s) 170, 184, 479, 780, 1195
HapII CCGG 1 cut(s) 1084
HgaI GACGC 1 cut(s) 700
Hin1II CATG 5 cut(s) 147, 477, 1103, 1194, 1258
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HinfI GANTC 4 cut(s) 441, 458, 961, 1149
HpaII CCGG 1 cut(s) 1084
HphI GGTGA 4 cut(s) 236, 346, 349, 423
Hpy166II GTNNAC 2 cut(s) 212, 391
Hpy188I TCNGA 3 cut(s) 91, 726, 1066
Hpy188III TCNNGA 6 cut(s) 160, 218, 314, 562, 576, 933
Hpy8I GTNNAC 2 cut(s) 212, 391
HpyAV CCTTC 3 cut(s) 54, 96, 472
HpyCH4III ACNGT 7 cut(s) 11, 113, 154, 310, 388, 395, 794
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 147, 471, 1190
HpyF3I CTNAG 6 cut(s) 37, 652, 725, 863, 1007, 1197
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 5 cut(s) 147, 477, 1103, 1194, 1258
Ksp22I TGATCA 2 cut(s) 697, 1108
Kzo9I GATC 8 cut(s) 204, 422, 538, 545, 697, 1108, 1129, 1234
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 6 cut(s) 140, 578, 828, 863, 969, 1177
Lsp1109I GCAGC 5 cut(s) 92, 338, 928, 1007, 1075
LweI GCATC 1 cut(s) 437
MaeI CTAG 3 cut(s) 293, 933, 1238
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 4 cut(s) 341, 451, 679, 765
MalI GATC 8 cut(s) 206, 424, 540, 547, 699, 1110, 1131, 1236
MboI GATC 8 cut(s) 204, 422, 538, 545, 697, 1108, 1129, 1234
MboII GAAGA 2 cut(s) 545, 555
MflI RGATCY 1 cut(s) 545
MhlI GDGCHC 1 cut(s) 860
MluCI AATT 7 cut(s) 598, 659, 891, 918, 954, 976, 1075
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 1192
MseI TTAA 2 cut(s) 569, 953
MslI CAYNNNNRTG 3 cut(s) 335, 876, 1104
MspA1I CMGCKG 1 cut(s) 941
MspI CCGG 1 cut(s) 1084
MspR9I CCNGG 3 cut(s) 323, 831, 1085
MvaI CCWGG 2 cut(s) 323, 831
NciI CCSGG 1 cut(s) 1085
NdeII GATC 8 cut(s) 204, 422, 538, 545, 697, 1108, 1129, 1234
NlaIII CATG 5 cut(s) 147, 477, 1103, 1194, 1258
NlaIV GGNNCC 5 cut(s) 136, 185, 624, 824, 971
NmuCI GTSAC 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 1192
NspI RCATGY 2 cut(s) 1103, 1258
OliI CACNNNNGTG 1 cut(s) 335
PaeI GCATGC 1 cut(s) 1103
PceI AGGCCT 1 cut(s) 170
PciI ACATGT 1 cut(s) 1254
PciSI GCTCTTC 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 3 cut(s) 441, 961, 1149
PflMI CCANNNNNTGG 2 cut(s) 125, 619
PkrI GCNGC 5 cut(s) 82, 328, 943, 1022, 1090
Ple19I CGATCG 1 cut(s) 207
PleI GAGTC 1 cut(s) 466
PmaCI CACGTG 1 cut(s) 57
PmlI CACGTG 1 cut(s) 57
PpsI GAGTC 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 57
PscI ACATGT 1 cut(s) 1254
Psp6I CCWGG 2 cut(s) 321, 829
PspCI CACGTG 1 cut(s) 57
PspGI CCWGG 2 cut(s) 321, 829
PspN4I GGNNCC 5 cut(s) 136, 185, 624, 824, 971
PspPI GGNCC 4 cut(s) 72, 183, 477, 622
PstNI CAGNNNCTG 1 cut(s) 724
PsuI RGATCY 1 cut(s) 545
PvuI CGATCG 1 cut(s) 207
RsaI GTAC 4 cut(s) 241, 377, 413, 796
RsaNI GTAC 4 cut(s) 240, 376, 412, 795
RseI CAYNNNNRTG 3 cut(s) 335, 876, 1104
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 2 cut(s) 569, 953
SatI GCNGC 5 cut(s) 81, 327, 942, 1021, 1089
Sau3AI GATC 8 cut(s) 204, 422, 538, 545, 697, 1108, 1129, 1234
Sau96I GGNCC 4 cut(s) 72, 183, 477, 622
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 3 cut(s) 323, 831, 1085
SduI GDGCHC 1 cut(s) 860
SfaNI GCATC 1 cut(s) 437
SfcI CTRYAG 2 cut(s) 817, 946
SinI GGWCC 2 cut(s) 72, 622
SmiMI CAYNNNNRTG 3 cut(s) 335, 876, 1104
SmlI CTYRAG 2 cut(s) 499, 1140
SmoI CTYRAG 2 cut(s) 499, 1140
SphI GCATGC 1 cut(s) 1103
Sse9I AATT 7 cut(s) 598, 659, 891, 918, 954, 976, 1075
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 2 cut(s) 939, 1045
SspMI CTAG 3 cut(s) 293, 933, 1238
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 3 cut(s) 321, 829, 1083
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 7 cut(s) 11, 113, 154, 310, 388, 395, 794
TaiI ACGT 1 cut(s) 59
TaqI TCGA 5 cut(s) 465, 541, 691, 986, 1147
TaqII GACCGA 3 cut(s) 20, 60, 197
TasI AATT 7 cut(s) 598, 659, 891, 918, 954, 976, 1075
TatI WGTACW 3 cut(s) 239, 375, 794
TfiI GAWTC 3 cut(s) 441, 961, 1149
Tru1I TTAA 2 cut(s) 569, 953
Tru9I TTAA 2 cut(s) 569, 953
TscAI CASTG 4 cut(s) 16, 157, 313, 1065
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 5 cut(s) 80, 326, 941, 1020, 1088
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 4 cut(s) 763, 864, 974, 1250
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 4 cut(s) 16, 157, 313, 1065
Van91I CCANNNNNTGG 2 cut(s) 125, 619
VpaK11BI GGWCC 2 cut(s) 72, 622
XagI CCTNNNNNAGG 1 cut(s) 1000
XapI RAATTY 4 cut(s) 659, 891, 918, 1075
XbaI TCTAGA 1 cut(s) 932
XceI RCATGY 2 cut(s) 1103, 1258
XspI CTAG 3 cut(s) 293, 933, 1238
ZrmI AGTACT 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.