Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001316

Physical Location & Seq

Genomic Coordinates Forward (+)

59204230 .. 59205678

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG396100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAAATCGATGGCCATCATAGAAAGGATCATACTTGTTTGTATTTTGTGCTGCACACTCTTGATGGAGGCCTCTGACTCTCAATCAGATGGGATGCAGCTTTTTTCAGCATCTGGGATTTTCAGGTTAGGATTCTTTAAGCCTGGGGATGCAAGTAACTCTTACTTAGGTATATGGTACAACAGAAATAATGAAAAAGCAGTATGGGTTGCCAACCGAAACAATCCGATTCTTGACAATTCTGGAGTTCTTAGAATTGATCAGTATGGTAACTTGAAGATTACACAGAAGATGGTGGATGATATTGTACTATATTCAGTTAAAAAAGCAATCAATACTAGTGCTACTCTTCTTGACAGTGGAAATTTTGTGCTTAGTGAGTTGAACGCTGATGGGTCTATAAAGCAGGAGTTGTGGCAAAGCTTTGATTATCCAACCGACACACTTTTGCCAAAAATGAAGTTGGGATTTAATAGAAAAGCTGGCCTCAATTGGACTCTCAAATCATGGAGAACTGGAAATTTGCCTAGCATAGGGTCCTTTACACTTGGTTTGGACCCTAGTGGTGTTAAACAAATGGTCATTTCTTGGAGAGGAAATCTGTACTGGACTAGTGGATCCTGGCACACTTGGTGCTTCAGCCTTACAGATGAGTTTTGCAGTAACTATAAGTACAACTTTAGCTACATATCAAATGAGAATGAAACATACTTGAGTTATTCAGTAGATAAAGGTGCCACTATTTTCCCAAGACTCCTGTTAAATGAAGAAGGTGAACTCAGAGGTTTCAGGATGGATGACATGTTTACAGGAGTTTCATGCACTTCTTCCATCAACTCTACCTTGAAAAATGGGTGTGTTGAGCAAAGGCAACCAGACTGCAGGAGCTCTCATGACAAATTCGTGCCAAAACTTGGTGTCATGTCTCACAGTGGAATCAAGATCCTTGAGAATGAAAACATGACTCTGATTGATTGTTGGGATGTTTGCTTCAAAATGTGTTCTTGTCTTGCTTATGCTTCTGCAAATGATGATGGCACCGGCTGTGAGATTTGGAAGAAAGGGGCAAGTTTCACACAAAACAATTTGGGTAGTCTGAGAGAGATACACATCCTGGAATCCAAAGAAGCAACAAATTGCAACCCCTGGGGATATACTGGGGAAAAAAAAAACAGACTGAAATGGAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

397

Amino Acids

44.78

Weight (kDa)

6.87

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	68 - 171	2e-30	D-mannose binding lectin
PAN_2	PF08276	294 - 354	2.8e-08	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030
fragaria_vesca	FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370
prunus_persica	Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0138071
rosa_laevigata	RLG00000019698 RLG00000019716 RLG00000019717 RLG00000019722
rosa_multiflora	Rmu_sc0008250.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106510 Rroxscaffold_2G00106540
rosa_rugosa	Rorug02G0348700 Rorug02G0349200 Rorug02G0349300 Rorug02G0349300 Rorug02G0349400
rosa_samantha	Rh2AG395500 Rh2AG396100 Rh2BG402500 Rh2BG402600 Rh2BG410400 Rh2CG382000 Rh2CG382600 Rh2DG417300 Rh2DG417400 Rh2DG417900
rosa_wichuraiana	Rw2G032340 Rw2G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	734, 1037
AccB7I	CCANNNNNTGG	1 cut(s)	914
AclWI	GGATC	4 cut(s)	35, 612, 625, 937
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	364, 520, 899
AcuI	CTGAAG	1 cut(s)	622
AdeI	CACNNNGTG	1 cut(s)	633
AfaI	GTAC	4 cut(s)	179, 309, 605, 674
AfiI	CCNNNNNNNGG	2 cut(s)	533, 914
AflIII	ACRYGT	1 cut(s)	801
AgsI	TTSAA	4 cut(s)	277, 385, 847, 994
AhlI	ACTAGT	2 cut(s)	338, 611
AjnI	CCWGG	4 cut(s)	142, 620, 1113, 1145
AluBI	AGCT	5 cut(s)	100, 423, 482, 684, 888
AluI	AGCT	5 cut(s)	100, 423, 482, 684, 888
Alw21I	GWGCWC	1 cut(s)	890
Alw26I	GTCTC	1 cut(s)	930
AlwI	GGATC	4 cut(s)	35, 612, 625, 937
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	3 cut(s)	12, 69, 484
ApeKI	GCWGC	2 cut(s)	51, 97
ApoI	RAATTY	3 cut(s)	364, 520, 899
AspS9I	GGNCC	2 cut(s)	537, 556
AsuHPI	GGTGA	1 cut(s)	785
AvaII	GGWCC	2 cut(s)	537, 556
BalI	TGGCCA	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	617
BanI	GGYRCC	2 cut(s)	734, 1037
BanII	GRGCYC	1 cut(s)	890
Bbv12I	GWGCWC	1 cut(s)	890
BbvI	GCAGC	2 cut(s)	38, 109
BccI	CCATC	9 cut(s)	4, 23, 58, 83, 286, 386, 787, 839, 1028
BciT130I	CCWGG	4 cut(s)	144, 622, 1115, 1147
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	930
BcuI	ACTAGT	2 cut(s)	338, 611
BfaI	CTAG	4 cut(s)	339, 528, 561, 612
BfmI	CTRYAG	1 cut(s)	880
BisI	GCNGC	2 cut(s)	52, 98
BlsI	GCNGC	2 cut(s)	53, 99
Bme1390I	CCNGG	4 cut(s)	144, 622, 1115, 1147
Bme18I	GGWCC	2 cut(s)	537, 556
BmgT120I	GGNCC	2 cut(s)	537, 556
BmiI	GGNNCC	5 cut(s)	538, 558, 619, 736, 1039
BmrFI	CCNGG	4 cut(s)	144, 622, 1115, 1147
BmrI	ACTGGG	1 cut(s)	1167
BmsI	GCATC	3 cut(s)	84, 119, 139
BmuI	ACTGGG	1 cut(s)	1167
BpmI	CTGGAG	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	733, 968
Bsa29I	ATCGAT	1 cut(s)	8
BsaBI	GATNNNNATC	2 cut(s)	14, 1109
BsaJI	CCNNGG	3 cut(s)	143, 1145, 1146
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 914
Bse118I	RCCGGY	1 cut(s)	1040
Bse1I	ACTGG	3 cut(s)	520, 611, 1162
Bse8I	GATNNNNATC	2 cut(s)	14, 1109
BseBI	CCWGG	4 cut(s)	144, 622, 1115, 1147
BseCI	ATCGAT	1 cut(s)	8
BseDI	CCNNGG	3 cut(s)	143, 1145, 1146
BseGI	GGATG	7 cut(s)	99, 154, 304, 798, 802, 988, 1110
BseJI	GATNNNNATC	2 cut(s)	14, 1109
BseLI	CCNNNNNNNGG	2 cut(s)	533, 914
BseMII	CTCAG	2 cut(s)	793, 1088
BseNI	ACTGG	3 cut(s)	520, 611, 1162
BseXI	GCAGC	2 cut(s)	38, 109
BsgI	GTGCAG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	14, 71, 486
BshNI	GGYRCC	2 cut(s)	734, 1037
BshVI	ATCGAT	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	890
BsiSI	CCGG	1 cut(s)	1041
BslI	CCNNNNNNNGG	2 cut(s)	533, 914
BsmAI	GTCTC	1 cut(s)	930
BsnI	GGCC	3 cut(s)	14, 71, 486
Bsp1286I	GDGCHC	1 cut(s)	890
Bsp143I	GATC	4 cut(s)	27, 259, 617, 942
BspANI	GGCC	3 cut(s)	14, 71, 486
BspCNI	CTCAG	2 cut(s)	792, 1089
BspDI	ATCGAT	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	5 cut(s)	538, 558, 619, 736, 1039
BspMAI	CTGCAG	1 cut(s)	884
BspPI	GGATC	4 cut(s)	35, 612, 625, 937
BspT107I	GGYRCC	2 cut(s)	734, 1037
BsrFI	RCCGGY	1 cut(s)	1040
BsrI	ACTGG	3 cut(s)	520, 611, 1162
BssAI	RCCGGY	1 cut(s)	1040
BssECI	CCNNGG	3 cut(s)	143, 1145, 1146
BssMI	GATC	4 cut(s)	27, 259, 617, 942
Bst2UI	CCWGG	4 cut(s)	144, 622, 1115, 1147
Bst4CI	ACNGT	2 cut(s)	359, 932
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	5 cut(s)	166, 251, 374, 779, 1097
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstF5I	GGATG	7 cut(s)	99, 154, 304, 798, 802, 988, 1110
BstKTI	GATC	4 cut(s)	30, 262, 620, 945
BstMAI	GTCTC	1 cut(s)	930
BstMBI	GATC	4 cut(s)	27, 259, 617, 942
BstNI	CCWGG	4 cut(s)	144, 622, 1115, 1147
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	4 cut(s)	142, 620, 1113, 1145
BstSFI	CTRYAG	1 cut(s)	880
BstV1I	GCAGC	2 cut(s)	38, 109
BstX2I	RGATCY	2 cut(s)	617, 942
BstYI	RGATCY	2 cut(s)	617, 942
Bsu15I	ATCGAT	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	14, 71, 486
BsuTUI	ATCGAT	1 cut(s)	8
BtsCI	GGATG	7 cut(s)	99, 154, 304, 798, 802, 988, 1110
BtsIMutI	CAGTG	2 cut(s)	364, 937
Cac8I	GCNNGC	1 cut(s)	484
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	892
Cfr10I	RCCGGY	1 cut(s)	1040
Cfr13I	GGNCC	2 cut(s)	537, 556
ClaI	ATCGAT	1 cut(s)	8
Csp6I	GTAC	4 cut(s)	178, 308, 604, 673
CviAII	CATG	6 cut(s)	507, 802, 819, 893, 922, 961
CviQI	GTAC	4 cut(s)	178, 308, 604, 673
DdeI	CTNAG	5 cut(s)	166, 251, 374, 779, 1097
DpnI	GATC	4 cut(s)	29, 261, 619, 944
DpnII	GATC	4 cut(s)	27, 259, 617, 942
DraIII	CACNNNGTG	1 cut(s)	633
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	888
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	890
Eco47I	GGWCC	2 cut(s)	537, 556
Eco53kI	GAGCTC	1 cut(s)	888
Eco57I	CTGAAG	1 cut(s)	622
EcoICRI	GAGCTC	1 cut(s)	888
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRII	CCWGG	4 cut(s)	142, 620, 1113, 1145
EcoT38I	GRGCYC	1 cut(s)	890
FaeI	CATG	6 cut(s)	510, 805, 822, 896, 925, 964
FalI	AAGNNNNNCTT	4 cut(s)	145, 177, 662, 694
FatI	CATG	6 cut(s)	506, 801, 818, 892, 921, 960
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	52, 98
FokI	GGATG	7 cut(s)	106, 161, 311, 805, 809, 995, 1097
FriOI	GRGCYC	1 cut(s)	890
Fsp4HI	GCNGC	2 cut(s)	52, 98
FspBI	CTAG	4 cut(s)	339, 528, 561, 612
GluI	GCNGC	2 cut(s)	52, 98
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	14, 71, 486
HapII	CCGG	1 cut(s)	1041
Hin1II	CATG	6 cut(s)	510, 805, 822, 896, 925, 964
HindIII	AAGCTT	1 cut(s)	421
HinfI	GANTC	8 cut(s)	77, 132, 229, 496, 753, 936, 964, 1118
HpaII	CCGG	1 cut(s)	1041
HphI	GGTGA	1 cut(s)	785
Hpy166II	GTNNAC	2 cut(s)	776, 807
Hpy188I	TCNGA	6 cut(s)	76, 88, 228, 782, 969, 1098
Hpy188III	TCNNGA	7 cut(s)	61, 233, 243, 353, 790, 893, 940
Hpy8I	GTNNAC	2 cut(s)	776, 807
HpyAV	CCTTC	1 cut(s)	764
HpyCH4III	ACNGT	2 cut(s)	359, 932
HpyCH4V	TGCA	8 cut(s)	54, 97, 152, 660, 822, 882, 1025, 1140
HpyF3I	CTNAG	5 cut(s)	166, 251, 374, 779, 1097
Hsp92II	CATG	6 cut(s)	510, 805, 822, 896, 925, 964
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	27, 259, 617, 942
LmnI	GCTCC	1 cut(s)	885
Lsp1109I	GCAGC	2 cut(s)	38, 109
LweI	GCATC	3 cut(s)	84, 119, 139
MaeI	CTAG	4 cut(s)	339, 528, 561, 612
MaeIII	GTNAC	3 cut(s)	155, 269, 662
MalI	GATC	4 cut(s)	29, 261, 619, 944
MboI	GATC	4 cut(s)	27, 259, 617, 942
MboII	GAAGA	6 cut(s)	289, 301, 341, 779, 819, 1069
MfeI	CAATTG	1 cut(s)	490
MflI	RGATCY	2 cut(s)	617, 942
MhlI	GDGCHC	1 cut(s)	890
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	8 cut(s)	238, 255, 364, 490, 520, 899, 1084, 1135
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	4 cut(s)	71, 490, 747, 958
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	5 cut(s)	61, 82, 497, 587, 776
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	5 cut(s)	138, 321, 471, 570, 761
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	1 cut(s)	1041
MspR9I	CCNGG	4 cut(s)	144, 622, 1115, 1147
MunI	CAATTG	1 cut(s)	490
MvaI	CCWGG	4 cut(s)	144, 622, 1115, 1147
NdeII	GATC	4 cut(s)	27, 259, 617, 942
NlaIII	CATG	6 cut(s)	510, 805, 822, 896, 925, 964
NlaIV	GGNNCC	5 cut(s)	538, 558, 619, 736, 1039
NspI	RCATGY	1 cut(s)	805
PagI	TCATGA	1 cut(s)	892
PasI	CCCWGGG	1 cut(s)	1146
PceI	AGGCCT	1 cut(s)	71
PciI	ACATGT	1 cut(s)	801
PfeI	GAWTC	4 cut(s)	132, 229, 936, 1118
PflMI	CCANNNNNTGG	1 cut(s)	914
PfoI	TCCNGGA	1 cut(s)	1113
PkrI	GCNGC	2 cut(s)	53, 99
PleI	GAGTC	4 cut(s)	71, 490, 747, 958
PpsI	GAGTC	4 cut(s)	71, 490, 747, 958
PpuMI	RGGWCCY	1 cut(s)	537
PscI	ACATGT	1 cut(s)	801
Psp124BI	GAGCTC	1 cut(s)	890
Psp5II	RGGWCCY	1 cut(s)	537
Psp6I	CCWGG	4 cut(s)	142, 620, 1113, 1145
PspGI	CCWGG	4 cut(s)	142, 620, 1113, 1145
PspN4I	GGNNCC	5 cut(s)	538, 558, 619, 736, 1039
PspPI	GGNCC	2 cut(s)	537, 556
PspPPI	RGGWCCY	1 cut(s)	537
PstI	CTGCAG	1 cut(s)	884
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	617, 942
RsaI	GTAC	4 cut(s)	179, 309, 605, 674
RsaNI	GTAC	4 cut(s)	178, 308, 604, 673
SacI	GAGCTC	1 cut(s)	890
SaqAI	TTAA	5 cut(s)	138, 321, 471, 570, 761
SatI	GCNGC	2 cut(s)	52, 98
Sau3AI	GATC	4 cut(s)	27, 259, 617, 942
Sau96I	GGNCC	2 cut(s)	537, 556
SchI	GAGTC	4 cut(s)	71, 490, 747, 958
ScrFI	CCNGG	4 cut(s)	144, 622, 1115, 1147
SduI	GDGCHC	1 cut(s)	890
SfaNI	GCATC	3 cut(s)	84, 119, 139
SfcI	CTRYAG	1 cut(s)	880
SinI	GGWCC	2 cut(s)	537, 556
SmlI	CTYRAG	2 cut(s)	712, 947
SmoI	CTYRAG	2 cut(s)	712, 947
SpeI	ACTAGT	2 cut(s)	338, 611
Sse9I	AATT	8 cut(s)	238, 255, 364, 490, 520, 899, 1084, 1135
SseBI	AGGCCT	1 cut(s)	71
SspMI	CTAG	4 cut(s)	339, 528, 561, 612
SstI	GAGCTC	1 cut(s)	890
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	4 cut(s)	142, 620, 1113, 1145
TaaI	ACNGT	2 cut(s)	359, 932
TaqI	TCGA	1 cut(s)	8
TasI	AATT	8 cut(s)	238, 255, 364, 490, 520, 899, 1084, 1135
TatI	WGTACW	3 cut(s)	307, 603, 672
TfiI	GAWTC	4 cut(s)	132, 229, 936, 1118
Tru1I	TTAA	5 cut(s)	138, 321, 471, 570, 761
Tru9I	TTAA	5 cut(s)	138, 321, 471, 570, 761
TscAI	CASTG	2 cut(s)	364, 937
TseI	GCWGC	2 cut(s)	51, 97
TspDTI	ATGAA	7 cut(s)	17, 207, 473, 717, 780, 807, 969
TspRI	CASTG	2 cut(s)	364, 937
Van91I	CCANNNNNTGG	1 cut(s)	914
VpaK11BI	GGWCC	2 cut(s)	537, 556
XagI	CCTNNNNNAGG	1 cut(s)	531
XapI	RAATTY	3 cut(s)	364, 520, 899
XceI	RCATGY	1 cut(s)	805
XspI	CTAG	4 cut(s)	339, 528, 561, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.