Rorug02G0348700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001316
Physical Location & Seq
Reverse (-)
43719260 .. 43722987
3728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0348700.1

Sequence Viewer

Length: 1320 bp
ATGGATGGGTCTCAAGGTGGTTCGAATGCACCAGCTCCTTTTCTTTCGAAAACATATGACTTGGTGGATGATCCTTCATCCAACCATGTGGTGTCTTGGAGTGAAACTGGTTGTAGTTTTGTAGTTTGGGATCCCACAGAGTTTGCCAAGGATTTGCTTCCCATGTATTTCAAGCACAACAACTTTTCGAGTTTTGTCAGGCAGCTTAATACATATGGGTTTAGGAAGGTTGATCCTGAGCAGTGGGAGTTTGCAAATGAGGAATTCGTAAGAGGAGGAAGGCATCTACTGAAGAATATTCACCGCCGCAAGCCAATTCATAGTCACTCCATGCAAAATCACGAGTATTCTTCAGTTCCTTTAAGCGAGAAAGAAAGAGAAGAATATGAAAAGAAAATCAATAGACTGAATAATGAGAAGAGGTTGCTCGAGTTAGATCTACAAAGACATCAAAAGGAGAATCAGGAGTTTGAATTTGAAATGCAATTGTTAAATGAACAATTGCAAAAGATGGAACTTCGGCAGAGGCAATATACGACCTTCCTAGCTCAAGTATTGAAGAAACCAGGGTTTGCCTCTTTACTTATGCAACAATCGGAAAATCATAACAAAAAGAGAAGACTGTTGAAACCTAACCTCTTTCCTGATGACTTCAGTATGGAAGGTTTGAATTTGAATTCACAGAAAGAGAACCTGGATTCAGTTTCAACTTCCACATCAAAGTCAGACCGGCTTGAGAAAATGGAGTCTTCCTTAAACTTTTGGGAAGATTTTCTACGTGGTATTGAGGAAGCTATACCTGAAGAAGTAAATGATATTGGCCCTTTGTCTGAGGCCTCTCCCATCATTGTTTCAGAAATGCAAGACCTTGGCATGAATAGCAGGCCGTGCTCACCTATATCGAATTTATCTTCGCCGACTTCAATGAATGCTCATTCATCCCCAGAGGTGGCTGGGTCTGCAAATTTTTTCGACATCCTTGCTATATCATCAATGTGTCAAACTGTTGATTTCAGGACTAAATCTTCAGGACTTGATATGAACTCTAAGCCTGATAGTGCACCTGCACTTGAGGCTCCAAAAGAAAGGGTAGTAGAAATGACAACCGCTGAGCCTGCTGCAGCAAATGATGTCTTTTGGGAGCAATGTCTAACAGAGACCCCCGGTTTAGAAGATGCGCAGGAAGTACAATCGGAAAGAATGGATGGTGATGGCGGAGCGGGTGATACCAATGCAGCTGCTCAGAAAAAGCTTTGGTGGAACACAGATAGTGTAGATAACTTTACAAACCAAATAGGGCGCCTCACTCCAGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

49.82

Weight (kDa)

4.96

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 14 - 103 2e-30 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1072
Acc16I TGCGCA 1 cut(s) 1179
Acc36I ACCTGC 1 cut(s) 1072
AccB1I GGYRCC 1 cut(s) 1299
AccBSI CCGCTC 1 cut(s) 1220
AciI CCGC 5 cut(s) 304, 307, 1107, 1215, 1220
AclWI GGATC 4 cut(s) 65, 125, 138, 227
AcsI RAATTY 6 cut(s) 263, 473, 670, 676, 904, 964
AcuI CTGAAG 5 cut(s) 311, 336, 637, 822, 1011
AcyI GRCGYC 1 cut(s) 1300
AfaI GTAC 1 cut(s) 1188
AfiI CCNNNNNNNGG 1 cut(s) 949
AgsI TTSAA 9 cut(s) 172, 473, 479, 559, 628, 670, 676, 708, 924
AjnI CCWGG 2 cut(s) 565, 693
AluBI AGCT 7 cut(s) 35, 205, 548, 794, 1238, 1252, 1313
AluI AGCT 7 cut(s) 35, 205, 548, 794, 1238, 1252, 1313
Alw21I GWGCWC 2 cut(s) 893, 1063
Alw26I GTCTC 2 cut(s) 15, 1151
Alw44I GTGCAC 1 cut(s) 1059
AlwI GGATC 4 cut(s) 65, 125, 138, 227
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 3 cut(s) 820, 834, 884
ApaLI GTGCAC 1 cut(s) 1059
ApeKI GCWGC 5 cut(s) 202, 1118, 1121, 1235, 1238
ApoI RAATTY 6 cut(s) 263, 473, 670, 676, 904, 964
Asp700I GAANNNNTTC 1 cut(s) 771
AspLEI GCGC 2 cut(s) 1180, 1302
AspS9I GGNCC 1 cut(s) 821
AsuC2I CCSGG 1 cut(s) 1164
AsuHPI GGTGA 4 cut(s) 293, 885, 1220, 1235
AsuII TTCGAA 2 cut(s) 23, 47
AvaI CYCGRG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 1063
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 1299
BarI GAAGNNNNNNTAC 2 cut(s) 759, 791
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 625, 741
Bbv12I GWGCWC 2 cut(s) 893, 1063
BbvI GCAGC 5 cut(s) 214, 1105, 1133, 1225, 1247
BccI CCATC 4 cut(s) 505, 851, 1199, 1205
BceAI ACGGC 1 cut(s) 871
BcgI CGANNNNNNTGC 2 cut(s) 962, 996
BciT130I CCWGG 2 cut(s) 567, 695
BcnI CCSGG 1 cut(s) 1164
BcoDI GTCTC 2 cut(s) 15, 1151
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 1 cut(s) 1119
BfoI RGCGCY 1 cut(s) 1303
BfuAI ACCTGC 1 cut(s) 1072
BglII AGATCT 1 cut(s) 436
BisI GCNGC 6 cut(s) 203, 307, 1119, 1122, 1236, 1239
BlpI GCTNAGC 1 cut(s) 1110
BlsI GCNGC 6 cut(s) 204, 308, 1120, 1123, 1237, 1240
Bme1390I CCNGG 3 cut(s) 567, 695, 1164
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 821
BmiI GGNNCC 3 cut(s) 132, 1077, 1301
BmrFI CCNGG 3 cut(s) 567, 695, 1164
BmsI GCATC 2 cut(s) 292, 1165
BpiI GAAGAC 2 cut(s) 625, 741
BpmI CTGGAG 1 cut(s) 1293
Bpu10I CCTNAGC 1 cut(s) 237
Bpu1102I GCTNAGC 1 cut(s) 1110
Bpu14I TTCGAA 2 cut(s) 23, 47
BpuEI CTTGAG 3 cut(s) 534, 755, 1091
BpuMI CCSGG 1 cut(s) 1164
BsaAI YACGTR 1 cut(s) 779
BsaHI GRCGYC 1 cut(s) 1300
BsaI GGTCTC 2 cut(s) 15, 1151
BsaJI CCNNGG 4 cut(s) 147, 566, 868, 1162
Bsc4I CCNNNNNNNGG 1 cut(s) 949
Bse118I RCCGGY 1 cut(s) 729
Bse1I ACTGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 1151
BseBI CCWGG 2 cut(s) 567, 695
BseDI CCNNGG 4 cut(s) 147, 566, 868, 1162
BseGI GGATG 6 cut(s) 10, 73, 77, 938, 975, 1210
BseLI CCNNNNNNNGG 1 cut(s) 949
BseMI GCAATG 1 cut(s) 1151
BseMII CTCAG 4 cut(s) 228, 822, 1101, 1256
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 1063
BseXI GCAGC 5 cut(s) 214, 1105, 1133, 1225, 1247
BseYI CCCAGC 1 cut(s) 953
BsgI GTGCAG 1 cut(s) 1050
BshFI GGCC 3 cut(s) 822, 836, 886
BshNI GGYRCC 1 cut(s) 1299
BsiHKAI GWGCWC 2 cut(s) 893, 1063
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 730, 1164
BslI CCNNNNNNNGG 1 cut(s) 949
BsmAI GTCTC 2 cut(s) 15, 1151
BsmI GAATGC 2 cut(s) 31, 934
BsnI GGCC 3 cut(s) 822, 836, 886
Bso31I GGTCTC 2 cut(s) 15, 1151
BsoBI CYCGRG 1 cut(s) 428
Bsp119I TTCGAA 2 cut(s) 23, 47
Bsp1286I GDGCHC 2 cut(s) 893, 1063
Bsp143I GATC 4 cut(s) 70, 130, 232, 436
Bsp1720I GCTNAGC 1 cut(s) 1110
BspACI CCGC 5 cut(s) 304, 307, 1107, 1215, 1220
BspANI GGCC 3 cut(s) 822, 836, 886
BspCNI CTCAG 4 cut(s) 229, 823, 1102, 1255
BspLI GGNNCC 3 cut(s) 132, 1077, 1301
BspMAI CTGCAG 1 cut(s) 1123
BspMI ACCTGC 1 cut(s) 1072
BspPI GGATC 4 cut(s) 65, 125, 138, 227
BspT104I TTCGAA 2 cut(s) 23, 47
BspT107I GGYRCC 1 cut(s) 1299
BspTNI GGTCTC 2 cut(s) 15, 1151
BsrBI CCGCTC 1 cut(s) 1220
BsrDI GCAATG 1 cut(s) 1151
BsrFI RCCGGY 1 cut(s) 729
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 729
BssECI CCNNGG 4 cut(s) 147, 566, 868, 1162
BssMI GATC 4 cut(s) 70, 130, 232, 436
BssNI GRCGYC 1 cut(s) 1300
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 2 cut(s) 147, 868
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 567, 695
Bst4CI ACNGT 2 cut(s) 624, 1006
Bst6I CTCTTC 1 cut(s) 413
BstACI GRCGYC 1 cut(s) 1300
BstAPI GCANNNNNTGC 1 cut(s) 888
BstBAI YACGTR 1 cut(s) 779
BstBI TTCGAA 2 cut(s) 23, 47
BstC8I GCNNGC 3 cut(s) 311, 884, 1116
BstDEI CTNAG 5 cut(s) 237, 831, 1047, 1110, 1242
BstF5I GGATG 6 cut(s) 10, 73, 77, 938, 975, 1210
BstH2I RGCGCY 1 cut(s) 1303
BstHHI GCGC 2 cut(s) 1180, 1302
BstKTI GATC 4 cut(s) 73, 133, 235, 439
BstMAI GTCTC 2 cut(s) 15, 1151
BstMBI GATC 4 cut(s) 70, 130, 232, 436
BstMWI GCNNNNNNNGC 5 cut(s) 879, 888, 959, 1073, 1115
BstNI CCWGG 2 cut(s) 567, 695
BstSCI CCNGG 3 cut(s) 565, 693, 1162
BstSFI CTRYAG 1 cut(s) 1119
BstSLI GKGCMC 1 cut(s) 1063
BstV1I GCAGC 5 cut(s) 214, 1105, 1133, 1225, 1247
BstV2I GAAGAC 2 cut(s) 625, 741
BstX2I RGATCY 2 cut(s) 130, 436
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 2 cut(s) 130, 436
BsuRI GGCC 3 cut(s) 822, 836, 886
BtsCI GGATG 6 cut(s) 10, 73, 77, 938, 975, 1210
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 248
BveI ACCTGC 1 cut(s) 1072
Cac8I GCNNGC 3 cut(s) 311, 884, 1116
CfoI GCGC 2 cut(s) 1180, 1302
Cfr10I RCCGGY 1 cut(s) 729
Cfr13I GGNCC 1 cut(s) 821
Csp6I GTAC 1 cut(s) 1187
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 4 cut(s) 86, 163, 331, 874
CviQI GTAC 1 cut(s) 1187
DdeI CTNAG 5 cut(s) 237, 831, 1047, 1110, 1242
DinI GGCGCC 1 cut(s) 1301
DpnI GATC 4 cut(s) 72, 132, 234, 438
DpnII GATC 4 cut(s) 70, 130, 232, 436
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
EciI GGCGGA 1 cut(s) 1230
Eco130I CCWWGG 2 cut(s) 147, 868
Eco147I AGGCCT 1 cut(s) 836
Eco31I GGTCTC 2 cut(s) 15, 1151
Eco57I CTGAAG 5 cut(s) 311, 336, 637, 822, 1011
Eco88I CYCGRG 1 cut(s) 428
EcoRI GAATTC 2 cut(s) 263, 676
EcoRII CCWGG 2 cut(s) 565, 693
EcoT14I CCWWGG 2 cut(s) 147, 868
EgeI GGCGCC 1 cut(s) 1301
EheI GGCGCC 1 cut(s) 1301
ErhI CCWWGG 2 cut(s) 147, 868
FaeI CATG 4 cut(s) 89, 166, 334, 877
FatI CATG 4 cut(s) 85, 162, 330, 873
FauI CCCGC 1 cut(s) 1213
FauNDI CATATG 2 cut(s) 55, 214
Fnu4HI GCNGC 6 cut(s) 203, 307, 1119, 1122, 1236, 1239
FokI GGATG 6 cut(s) 17, 64, 80, 925, 962, 1217
Fsp4HI GCNGC 6 cut(s) 203, 307, 1119, 1122, 1236, 1239
FspBI CTAG 1 cut(s) 545
FspI TGCGCA 1 cut(s) 1179
GlaI GCGC 2 cut(s) 1179, 1301
GluI GCNGC 6 cut(s) 203, 307, 1119, 1122, 1236, 1239
GsaI CCCAGC 1 cut(s) 957
GsuI CTGGAG 1 cut(s) 1293
HaeII RGCGCY 1 cut(s) 1303
HaeIII GGCC 3 cut(s) 822, 836, 886
HapII CCGG 2 cut(s) 730, 1164
HhaI GCGC 2 cut(s) 1180, 1302
Hin1I GRCGYC 1 cut(s) 1300
Hin1II CATG 4 cut(s) 89, 166, 334, 877
Hin6I GCGC 2 cut(s) 1178, 1300
HinP1I GCGC 2 cut(s) 1178, 1300
HindIII AAGCTT 1 cut(s) 1250
HinfI GANTC 3 cut(s) 460, 698, 746
HpaII CCGG 2 cut(s) 730, 1164
HphI GGTGA 4 cut(s) 293, 885, 1220, 1235
Hpy166II GTNNAC 1 cut(s) 1061
Hpy188I TCNGA 6 cut(s) 598, 727, 832, 856, 1195, 1245
Hpy188III TCNNGA 6 cut(s) 236, 341, 464, 644, 1015, 1029
Hpy8I GTNNAC 1 cut(s) 1061
HpyAV CCTTC 5 cut(s) 84, 220, 273, 550, 656
HpyCH4III ACNGT 2 cut(s) 624, 1006
HpyCH4IV ACGT 1 cut(s) 778
HpyF10VI GCNNNNNNNGC 5 cut(s) 879, 888, 959, 1073, 1115
HpyF3I CTNAG 5 cut(s) 237, 831, 1047, 1110, 1242
HpySE526I ACGT 1 cut(s) 778
Hsp92I GRCGYC 1 cut(s) 1300
Hsp92II CATG 4 cut(s) 89, 166, 334, 877
HspAI GCGC 2 cut(s) 1178, 1300
KasI GGCGCC 1 cut(s) 1299
Kzo9I GATC 4 cut(s) 70, 130, 232, 436
LmnI GCTCC 4 cut(s) 40, 1081, 1141, 1217
Lsp1109I GCAGC 5 cut(s) 214, 1105, 1133, 1225, 1247
LweI GCATC 2 cut(s) 292, 1165
MaeI CTAG 1 cut(s) 545
MaeII ACGT 1 cut(s) 778
MaeIII GTNAC 1 cut(s) 323
MalI GATC 4 cut(s) 72, 132, 234, 438
MbiI CCGCTC 1 cut(s) 1220
MboI GATC 4 cut(s) 70, 130, 232, 436
MfeI CAATTG 2 cut(s) 485, 500
MflI RGATCY 2 cut(s) 130, 436
MhlI GDGCHC 2 cut(s) 893, 1063
MluCI AATT 9 cut(s) 263, 315, 473, 485, 500, 670, 676, 904, 964
Mly113I GGCGCC 1 cut(s) 1300
MlyI GAGTC 1 cut(s) 755
MmeI TCCRAC 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 771
MseI TTAA 4 cut(s) 207, 362, 491, 755
MslI CAYNNNNRTG 1 cut(s) 994
MspA1I CMGCKG 2 cut(s) 1109, 1238
MspI CCGG 2 cut(s) 730, 1164
MspR9I CCNGG 3 cut(s) 567, 695, 1164
MunI CAATTG 2 cut(s) 485, 500
Mva1269I GAATGC 2 cut(s) 31, 934
MvaI CCWGG 2 cut(s) 567, 695
MwoI GCNNNNNNNGC 5 cut(s) 879, 888, 959, 1073, 1115
NarI GGCGCC 1 cut(s) 1300
NciI CCSGG 1 cut(s) 1164
NdeI CATATG 2 cut(s) 55, 214
NdeII GATC 4 cut(s) 70, 130, 232, 436
NlaIII CATG 4 cut(s) 89, 166, 334, 877
NlaIV GGNNCC 3 cut(s) 132, 1077, 1301
NmuCI GTSAC 1 cut(s) 323
NsbI TGCGCA 1 cut(s) 1179
NspV TTCGAA 2 cut(s) 23, 47
PaeR7I CTCGAG 1 cut(s) 428
PaqCI CACCTGC 1 cut(s) 1072
PceI AGGCCT 1 cut(s) 836
PctI GAATGC 2 cut(s) 31, 934
PdmI GAANNNNTTC 1 cut(s) 771
PfeI GAWTC 2 cut(s) 460, 698
PkrI GCNGC 6 cut(s) 204, 308, 1120, 1123, 1237, 1240
PleI GAGTC 1 cut(s) 754
PluTI GGCGCC 1 cut(s) 1303
PpsI GAGTC 1 cut(s) 754
Ppu21I YACGTR 1 cut(s) 779
Psp6I CCWGG 2 cut(s) 565, 693
PspFI CCCAGC 1 cut(s) 953
PspGI CCWGG 2 cut(s) 565, 693
PspN4I GGNNCC 3 cut(s) 132, 1077, 1301
PspPI GGNCC 1 cut(s) 821
PspXI VCTCGAGB 1 cut(s) 428
PstI CTGCAG 1 cut(s) 1123
PsuI RGATCY 2 cut(s) 130, 436
PvuII CAGCTG 1 cut(s) 1238
RsaI GTAC 1 cut(s) 1188
RsaNI GTAC 1 cut(s) 1187
RseI CAYNNNNRTG 1 cut(s) 994
SaqAI TTAA 4 cut(s) 207, 362, 491, 755
SatI GCNGC 6 cut(s) 203, 307, 1119, 1122, 1236, 1239
Sau3AI GATC 4 cut(s) 70, 130, 232, 436
Sau96I GGNCC 1 cut(s) 821
SchI GAGTC 1 cut(s) 755
ScrFI CCNGG 3 cut(s) 567, 695, 1164
SduI GDGCHC 2 cut(s) 893, 1063
SfaNI GCATC 2 cut(s) 292, 1165
SfcI CTRYAG 1 cut(s) 1119
SfoI GGCGCC 1 cut(s) 1301
Sfr274I CTCGAG 1 cut(s) 428
SfuI TTCGAA 2 cut(s) 23, 47
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 994
SmlI CTYRAG 5 cut(s) 12, 428, 549, 734, 1070
SmoI CTYRAG 5 cut(s) 12, 428, 549, 734, 1070
Sse9I AATT 9 cut(s) 263, 315, 473, 485, 500, 670, 676, 904, 964
SseBI AGGCCT 1 cut(s) 836
SsiI CCGC 5 cut(s) 304, 307, 1107, 1215, 1220
SspDI GGCGCC 1 cut(s) 1299
SspI AATATT 1 cut(s) 298
SspMI CTAG 1 cut(s) 545
StuI AGGCCT 1 cut(s) 836
StyD4I CCNGG 3 cut(s) 565, 693, 1162
StyI CCWWGG 2 cut(s) 147, 868
TaaI ACNGT 2 cut(s) 624, 1006
TaiI ACGT 1 cut(s) 781
TaqI TCGA 6 cut(s) 23, 47, 188, 429, 902, 972
TasI AATT 9 cut(s) 263, 315, 473, 485, 500, 670, 676, 904, 964
TatI WGTACW 1 cut(s) 1186
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 2 cut(s) 460, 698
Tru1I TTAA 4 cut(s) 207, 362, 491, 755
Tru9I TTAA 4 cut(s) 207, 362, 491, 755
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 5 cut(s) 202, 1118, 1121, 1235, 1238
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 8 cut(s) 66, 308, 402, 510, 890, 927, 941, 1055
TspRI CASTG 1 cut(s) 248
VneI GTGCAC 1 cut(s) 1059
XapI RAATTY 6 cut(s) 263, 473, 670, 676, 904, 964
XhoI CTCGAG 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 771
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.