RLG00000019698

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001316
Physical Location & Seq
Forward (+)
55583843 .. 55587852
4010 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019698

Sequence Viewer

Length: 1503 bp
ATGTTTACAGGAGTTTCATGCACTTCTTCCATCAACTCTACCTTGAAAAATGGGTGTGCTGAGCAAAGGCTACTAGACTGTAGGAGCTCTCATGACAAATTTGTGCCAAAACTTGGTGTCATGTCTGACAGTGGAATCAAGATCCTTGAGAATGACAACATGACTCTGATTGATTGTTGGGATGTTTGCTTCAAAATGTGTTCTTGTCTTGCTTATGCTTCTGCAAATGATGATGGCACCGGCTGTGAGATTTGGAAGAAAGGGGCAAGTTTCACACAAAACAATTTGGGCAGTCTGAGAGAGATATACATCCGGGAATCCAAAGGGGCCTCACATTCCACATTTAGATCCGGTAGGGGGACCGTTGGTTGTTGTCTTTTTGTTTCTTTGTTGGCCTCCTCCTCACGGCCCCCAACATACACTTTTACGATCGGTCAACATCTGGAGGGTGATTATTACAAATGTACATTGACCAACGGACGGGACGATTGGGTCTGTCAAGTTGAACCATCTTGTCTAGTGCCAAAAGCCACTGTTCCTGAAATCCAGGCAGCCACATTGGTGAGTGACGGCTACATCACCAACAACACAAGAAGTGAGTACTCTTTGACGGTTTACTGTCGGGCTAAACTGGAGTACCCCAAAGGATCAGCATCACCACCAAGATTCGCCTTGGTTACAGAGTCCTTCGATTGCACATGGGCCACTTGGTTTCACAAACACTTGAGCCAGATTACAACAGCAAACAAGGACAAAGTAGCAGATCGAAGATCTGCTCTTCTTATCAGGAGTTTAATCTCTGGAGCTGATGATATGCTTGTCAATTCCTCAACCTCCCACAATATGGACCCCAACCACATATACATTGTTGGCAACTCAGTCAAATTCGCTCACTTTGACAAGGTAACAAGAAGTCGAAATGATCAACAGCAAAGCGTCTTTCAGCTTCTGAGAGCTTCTTTGCCACAGAATGTTCTAACTGGAGAGCTGTTACACTTCATTGGCCTACAAACAAACTGTACAAGAGAGGTATTCTTATTCTATAGGCTCCATCCAGGGATTTCCAATGGAGATGAAATGTGCTCCCTAAGACTTCACTCCTATGATATATCAAAAATTCAAGGACTTGATTTGGACAGAGAAATTTCCACAAAATCTAGAAACGTTGCCTATAGTTTAATTATAAATCAGGGGAGCCAGAATTGGCTGTCGAGGATTACCTCAACGAGGCTGAGAGCTTTGGGCTGCTACTCTCTTTATTTGAATAAGCGGAGACCCAAACCAGTGTCAGACTTTGTGAATTTCAGCCGGGCTGCTGTTGAGCATGCCAATGATAAAAAAACTATGGCTAATGATCCTATCTCTCAAGGTCTAATCATTAGTTATGAGGAAGTGGATGAGGAGCTAAACAATGCATGGCCTCAGTTTATGATACTCTGGTTTGATTGCTGTGTTGATGATATAGCCTACTACGGCAACATGTTTCATTTCTCTACACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

501

Amino Acids

56.14

Weight (kDa)

7.14

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 27 - 87 3.5e-08 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1184
AasI GACNNNNNNGTC 1 cut(s) 491
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 2 cut(s) 113, 844
AciI CCGC 1 cut(s) 1270
AclI AACGTT 1 cut(s) 1164
AclWI GGATC 4 cut(s) 136, 342, 655, 1349
AcsI RAATTY 5 cut(s) 98, 884, 1116, 1143, 1300
AfaI GTAC 4 cut(s) 466, 602, 638, 1021
AfiI CCNNNNNNNGG 6 cut(s) 113, 357, 405, 480, 844, 1227
AflIII ACRYGT 1 cut(s) 1479
AgsI TTSAA 5 cut(s) 46, 193, 506, 1121, 1264
AjnI CCWGG 2 cut(s) 546, 1054
AleI CACNNNNGTG 1 cut(s) 560
AluBI AGCT 7 cut(s) 87, 806, 946, 956, 988, 1238, 1405
AluI AGCT 7 cut(s) 87, 806, 946, 956, 988, 1238, 1405
Alw21I GWGCWC 2 cut(s) 89, 1085
Alw26I GTCTC 1 cut(s) 1267
AlwI GGATC 4 cut(s) 136, 342, 655, 1349
AlwNI CAGNNNCTG 1 cut(s) 949
AoxI GGCC 6 cut(s) 327, 393, 407, 702, 1003, 1418
ApeKI GCWGC 3 cut(s) 551, 1245, 1313
ApoI RAATTY 5 cut(s) 98, 884, 1116, 1143, 1300
AspS9I GGNCC 5 cut(s) 327, 360, 408, 702, 847
AsuC2I CCSGG 2 cut(s) 314, 1310
AsuHPI GGTGA 4 cut(s) 461, 571, 574, 648
AvaII GGWCC 2 cut(s) 360, 847
BaeI ACNNNNGTAYC 4 cut(s) 620, 653, 1424, 1457
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 89
Bbv12I GWGCWC 2 cut(s) 89, 1085
BbvI GCAGC 3 cut(s) 563, 1232, 1300
BccI CCATC 4 cut(s) 38, 227, 517, 1059
BceAI ACGGC 3 cut(s) 422, 586, 1489
BciT130I CCWGG 2 cut(s) 548, 1056
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 2 cut(s) 314, 1310
BcoDI GTCTC 1 cut(s) 1267
BfaI CTAG 3 cut(s) 74, 518, 1158
BfmI CTRYAG 3 cut(s) 79, 1042, 1171
BglII AGATCT 1 cut(s) 770
BisI GCNGC 3 cut(s) 552, 1246, 1314
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 3 cut(s) 553, 1247, 1315
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 4 cut(s) 314, 548, 1056, 1310
Bme18I GGWCC 2 cut(s) 360, 847
BmgT120I GGNCC 5 cut(s) 327, 360, 408, 702, 847
BmiI GGNNCC 7 cut(s) 238, 328, 361, 410, 849, 1049, 1196
BmrFI CCNGG 4 cut(s) 314, 548, 1056, 1310
BmsI GCATC 1 cut(s) 662
BpmI CTGGAG 4 cut(s) 464, 653, 822, 1002
Bpu1102I GCTNAGC 1 cut(s) 60
BpuEI CTTGAG 3 cut(s) 167, 745, 1350
BpuMI CCSGG 2 cut(s) 314, 1310
BsaBI GATNNNNATC 2 cut(s) 308, 652
BsaI GGTCTC 1 cut(s) 1267
BsaJI CCNNGG 2 cut(s) 672, 1055
BsaWI WCCGGW 1 cut(s) 350
Bsc4I CCNNNNNNNGG 6 cut(s) 113, 357, 405, 480, 844, 1227
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 3 cut(s) 636, 985, 1283
Bse8I GATNNNNATC 2 cut(s) 308, 652
BseBI CCWGG 2 cut(s) 548, 1056
BseDI CCNNGG 2 cut(s) 672, 1055
BseGI GGATG 4 cut(s) 187, 309, 1051, 1402
BseJI GATNNNNATC 2 cut(s) 308, 652
BseLI CCNNNNNNNGG 6 cut(s) 113, 357, 405, 480, 844, 1227
BseMII CTCAG 6 cut(s) 51, 287, 891, 941, 1223, 1436
BseNI ACTGG 3 cut(s) 636, 985, 1283
BseRI GAGGAG 3 cut(s) 388, 391, 1415
BseXI GCAGC 3 cut(s) 563, 1232, 1300
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 6 cut(s) 329, 395, 409, 704, 1005, 1420
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 432
BsiHKAI GWGCWC 2 cut(s) 89, 1085
BsiSI CCGG 4 cut(s) 240, 313, 351, 1309
BslFI GGGAC 2 cut(s) 373, 497
BslI CCNNNNNNNGG 6 cut(s) 113, 357, 405, 480, 844, 1227
BsmAI GTCTC 1 cut(s) 1267
BsmFI GGGAC 2 cut(s) 373, 497
BsnI GGCC 6 cut(s) 329, 395, 409, 704, 1005, 1420
Bso31I GGTCTC 1 cut(s) 1267
Bsp1286I GDGCHC 2 cut(s) 89, 1085
Bsp1407I TGTACA 2 cut(s) 464, 1019
Bsp143I GATC 8 cut(s) 141, 347, 429, 647, 763, 770, 922, 1354
Bsp1720I GCTNAGC 1 cut(s) 60
BspACI CCGC 1 cut(s) 1270
BspANI GGCC 6 cut(s) 329, 395, 409, 704, 1005, 1420
BspCNI CTCAG 6 cut(s) 52, 288, 890, 942, 1224, 1435
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 7 cut(s) 238, 328, 361, 410, 849, 1049, 1196
BspPI GGATC 4 cut(s) 136, 342, 655, 1349
BspQI GCTCTTC 1 cut(s) 783
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 1267
BsrFI RCCGGY 1 cut(s) 239
BsrGI TGTACA 2 cut(s) 464, 1019
BsrI ACTGG 3 cut(s) 636, 985, 1283
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 672, 1055
BssMI GATC 8 cut(s) 141, 347, 429, 647, 763, 770, 922, 1354
BssT1I CCWWGG 1 cut(s) 672
Bst2UI CCWGG 2 cut(s) 548, 1056
Bst4CI ACNGT 7 cut(s) 80, 131, 364, 535, 613, 620, 1019
Bst6I CTCTTC 1 cut(s) 783
BstAUI TGTACA 2 cut(s) 464, 1019
BstC8I GCNNGC 1 cut(s) 1326
BstDEI CTNAG 7 cut(s) 60, 296, 877, 950, 1088, 1232, 1422
BstENI CCTNNNNNAGG 1 cut(s) 1225
BstF5I GGATG 4 cut(s) 187, 309, 1051, 1402
BstKTI GATC 8 cut(s) 144, 350, 432, 650, 766, 773, 925, 1357
BstMAI GTCTC 1 cut(s) 1267
BstMBI GATC 8 cut(s) 141, 347, 429, 647, 763, 770, 922, 1354
BstMCI CGRYCG 1 cut(s) 432
BstNI CCWGG 2 cut(s) 548, 1056
BstNSI RCATGY 2 cut(s) 1328, 1483
BstSCI CCNGG 4 cut(s) 312, 546, 1054, 1308
BstSFI CTRYAG 3 cut(s) 79, 1042, 1171
BstV1I GCAGC 3 cut(s) 563, 1232, 1300
BstX2I RGATCY 3 cut(s) 141, 347, 770
BstYI RGATCY 3 cut(s) 141, 347, 770
BsuRI GGCC 6 cut(s) 329, 395, 409, 704, 1005, 1420
BtsCI GGATG 4 cut(s) 187, 309, 1051, 1402
BtsIMutI CAGTG 3 cut(s) 136, 531, 1290
Cac8I GCNNGC 1 cut(s) 1326
CaiI CAGNNNCTG 1 cut(s) 949
CciI TCATGA 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 5 cut(s) 327, 360, 408, 702, 847
CseI GACGC 1 cut(s) 925
Csp6I GTAC 4 cut(s) 465, 601, 637, 1020
CviAII CATG 8 cut(s) 18, 92, 121, 160, 699, 1325, 1416, 1480
CviQI GTAC 4 cut(s) 465, 601, 637, 1020
DdeI CTNAG 7 cut(s) 60, 296, 877, 950, 1088, 1232, 1422
DpnI GATC 8 cut(s) 143, 349, 431, 649, 765, 772, 924, 1356
DpnII GATC 8 cut(s) 141, 347, 429, 647, 763, 770, 922, 1354
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
Eam1104I CTCTTC 1 cut(s) 783
EarI CTCTTC 1 cut(s) 783
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 672
Eco24I GRGCYC 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 1267
Eco47I GGWCC 2 cut(s) 360, 847
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoNI CCTNNNNNAGG 1 cut(s) 1225
EcoO109I RGGNCCY 1 cut(s) 327
EcoRII CCWGG 2 cut(s) 546, 1054
EcoT14I CCWWGG 1 cut(s) 672
EcoT22I ATGCAT 1 cut(s) 1417
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 8 cut(s) 21, 95, 124, 163, 702, 1328, 1419, 1483
FaqI GGGAC 2 cut(s) 373, 497
FatI CATG 8 cut(s) 17, 91, 120, 159, 698, 1324, 1415, 1479
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 3 cut(s) 552, 1246, 1314
FokI GGATG 4 cut(s) 194, 296, 1038, 1409
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 3 cut(s) 552, 1246, 1314
FspBI CTAG 3 cut(s) 74, 518, 1158
GluI GCNGC 3 cut(s) 552, 1246, 1314
GsuI CTGGAG 4 cut(s) 464, 653, 822, 1002
HaeIII GGCC 6 cut(s) 329, 395, 409, 704, 1005, 1420
HapII CCGG 4 cut(s) 240, 313, 351, 1309
HgaI GACGC 1 cut(s) 925
Hin1II CATG 8 cut(s) 21, 95, 124, 163, 702, 1328, 1419, 1483
HincII GTYRAC 1 cut(s) 437
HindII GTYRAC 1 cut(s) 437
HinfI GANTC 5 cut(s) 135, 163, 317, 666, 683
HpaII CCGG 4 cut(s) 240, 313, 351, 1309
HphI GGTGA 4 cut(s) 461, 571, 574, 648
Hpy166II GTNNAC 3 cut(s) 6, 437, 616
Hpy188I TCNGA 5 cut(s) 127, 168, 297, 951, 1291
Hpy188III TCNNGA 7 cut(s) 92, 139, 443, 539, 787, 801, 1158
Hpy8I GTNNAC 3 cut(s) 6, 437, 616
HpyAV CCTTC 1 cut(s) 697
HpyCH4III ACNGT 7 cut(s) 80, 131, 364, 535, 613, 620, 1019
HpyCH4IV ACGT 1 cut(s) 1164
HpyCH4V TGCA 4 cut(s) 21, 224, 696, 1415
HpyF3I CTNAG 7 cut(s) 60, 296, 877, 950, 1088, 1232, 1422
HpySE526I ACGT 1 cut(s) 1164
Hsp92II CATG 8 cut(s) 21, 95, 124, 163, 702, 1328, 1419, 1483
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 8 cut(s) 141, 347, 429, 647, 763, 770, 922, 1354
LguI GCTCTTC 1 cut(s) 783
LmnI GCTCC 6 cut(s) 84, 803, 1053, 1088, 1194, 1402
Lsp1109I GCAGC 3 cut(s) 563, 1232, 1300
LweI GCATC 1 cut(s) 662
MaeI CTAG 3 cut(s) 74, 518, 1158
MaeII ACGT 1 cut(s) 1164
MaeIII GTNAC 4 cut(s) 566, 676, 904, 990
MalI GATC 8 cut(s) 143, 349, 431, 649, 765, 772, 924, 1356
MboI GATC 8 cut(s) 141, 347, 429, 647, 763, 770, 922, 1354
MboII GAAGA 4 cut(s) 18, 268, 770, 780
MflI RGATCY 3 cut(s) 141, 347, 770
MhlI GDGCHC 2 cut(s) 89, 1085
MluCI AATT 9 cut(s) 98, 283, 823, 884, 1116, 1143, 1179, 1201, 1300
MlyI GAGTC 2 cut(s) 157, 692
Mph1103I ATGCAT 1 cut(s) 1417
MseI TTAA 2 cut(s) 794, 1178
MslI CAYNNNNRTG 3 cut(s) 560, 1101, 1329
MspI CCGG 4 cut(s) 240, 313, 351, 1309
MspR9I CCNGG 4 cut(s) 314, 548, 1056, 1310
MvaI CCWGG 2 cut(s) 548, 1056
NciI CCSGG 2 cut(s) 314, 1310
NdeII GATC 8 cut(s) 141, 347, 429, 647, 763, 770, 922, 1354
NlaIII CATG 8 cut(s) 21, 95, 124, 163, 702, 1328, 1419, 1483
NlaIV GGNNCC 7 cut(s) 238, 328, 361, 410, 849, 1049, 1196
NmuCI GTSAC 1 cut(s) 566
NsiI ATGCAT 1 cut(s) 1417
NspI RCATGY 2 cut(s) 1328, 1483
OliI CACNNNNGTG 1 cut(s) 560
PaeI GCATGC 1 cut(s) 1328
PagI TCATGA 1 cut(s) 91
PciI ACATGT 1 cut(s) 1479
PciSI GCTCTTC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PfeI GAWTC 3 cut(s) 135, 317, 666
PflMI CCANNNNNTGG 2 cut(s) 113, 844
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 3 cut(s) 553, 1247, 1315
Ple19I CGATCG 1 cut(s) 432
PleI GAGTC 2 cut(s) 157, 691
PpsI GAGTC 2 cut(s) 157, 691
PscI ACATGT 1 cut(s) 1479
PsiI TTATAA 1 cut(s) 1184
Psp124BI GAGCTC 1 cut(s) 89
Psp1406I AACGTT 1 cut(s) 1164
Psp6I CCWGG 2 cut(s) 546, 1054
PspGI CCWGG 2 cut(s) 546, 1054
PspN4I GGNNCC 7 cut(s) 238, 328, 361, 410, 849, 1049, 1196
PspPI GGNCC 5 cut(s) 327, 360, 408, 702, 847
PstNI CAGNNNCTG 1 cut(s) 949
PsuI RGATCY 3 cut(s) 141, 347, 770
PvuI CGATCG 1 cut(s) 432
RsaI GTAC 4 cut(s) 466, 602, 638, 1021
RsaNI GTAC 4 cut(s) 465, 601, 637, 1020
RseI CAYNNNNRTG 3 cut(s) 560, 1101, 1329
SacI GAGCTC 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 2 cut(s) 794, 1178
SatI GCNGC 3 cut(s) 552, 1246, 1314
Sau3AI GATC 8 cut(s) 141, 347, 429, 647, 763, 770, 922, 1354
Sau96I GGNCC 5 cut(s) 327, 360, 408, 702, 847
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 2 cut(s) 157, 692
ScrFI CCNGG 4 cut(s) 314, 548, 1056, 1310
SduI GDGCHC 2 cut(s) 89, 1085
SfaNI GCATC 1 cut(s) 662
SfcI CTRYAG 3 cut(s) 79, 1042, 1171
SinI GGWCC 2 cut(s) 360, 847
SmiMI CAYNNNNRTG 3 cut(s) 560, 1101, 1329
SmlI CTYRAG 3 cut(s) 146, 724, 1365
SmoI CTYRAG 3 cut(s) 146, 724, 1365
SphI GCATGC 1 cut(s) 1328
Sse9I AATT 9 cut(s) 98, 283, 823, 884, 1116, 1143, 1179, 1201, 1300
SsiI CCGC 1 cut(s) 1270
SspMI CTAG 3 cut(s) 74, 518, 1158
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 4 cut(s) 312, 546, 1054, 1308
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 7 cut(s) 80, 131, 364, 535, 613, 620, 1019
TaiI ACGT 1 cut(s) 1167
TaqI TCGA 4 cut(s) 690, 766, 916, 1211
TaqII GACCGA 1 cut(s) 422
TasI AATT 9 cut(s) 98, 283, 823, 884, 1116, 1143, 1179, 1201, 1300
TatI WGTACW 3 cut(s) 464, 600, 1019
TfiI GAWTC 3 cut(s) 135, 317, 666
Tru1I TTAA 2 cut(s) 794, 1178
Tru9I TTAA 2 cut(s) 794, 1178
TscAI CASTG 3 cut(s) 136, 538, 1290
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 3 cut(s) 551, 1245, 1313
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 4 cut(s) 6, 988, 1089, 1475
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 3 cut(s) 136, 538, 1290
Van91I CCANNNNNTGG 2 cut(s) 113, 844
VpaK11BI GGWCC 2 cut(s) 360, 847
XagI CCTNNNNNAGG 1 cut(s) 1225
XapI RAATTY 5 cut(s) 98, 884, 1116, 1143, 1300
XbaI TCTAGA 1 cut(s) 1157
XceI RCATGY 2 cut(s) 1328, 1483
XspI CTAG 3 cut(s) 74, 518, 1158
ZrmI AGTACT 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 1417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.