Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001316

Physical Location & Seq

Genomic Coordinates Reverse (-)

60608929 .. 60611560

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG417400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATTACAACAGCAATTAATGATAAATTAACACTTCGAAAAGCTACTCTTCTTATCATGTTTCTCTGTGACGATTGGGTCTGTCAAGTTGAACCATCTTGTCTAGTGCCAAAAGCCACTGTTCCTGAAATCCAGGCAGCCACATTGGTGAGTGACGGCTACATCACCAACAACACAAGAAGTGAGTACTCTTTGACGGTTTACTGTCGGGCTAAACTGGAGTACCCCAAAGGATCAGCATCACCACCAAGATTCGCCGTAGTTACAAAGTCGTTCGATTGCACATGGGCCACTTGGTTTCACAAACACTTGAGCCAGATTACAACAGCAAACAAGGACAAATTAGCAGATCGAAGAGCTACTCTTCTTATCAGGTCCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.29

Weight (kDa)

9.06

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030
fragaria_vesca	FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370
prunus_persica	Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0138071
rosa_laevigata	RLG00000019698 RLG00000019716 RLG00000019717 RLG00000019722
rosa_multiflora	Rmu_sc0008250.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106510 Rroxscaffold_2G00106540
rosa_rugosa	Rorug02G0348700 Rorug02G0349200 Rorug02G0349300 Rorug02G0349300 Rorug02G0349400
rosa_samantha	Rh2AG395500 Rh2AG396100 Rh2BG402500 Rh2BG402600 Rh2BG410400 Rh2CG382000 Rh2CG382600 Rh2DG417300 Rh2DG417400 Rh2DG417900
rosa_wichuraiana	Rw2G032340 Rw2G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	241
AfaI	GTAC	2 cut(s)	188, 224
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	132
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	2 cut(s)	44, 359
AluI	AGCT	2 cut(s)	44, 359
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	137
AseI	ATTAAT	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	288, 375
AsuHPI	GGTGA	3 cut(s)	157, 160, 234
AsuII	TTCGAA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	375
BaeI	ACNNNNGTAYC	2 cut(s)	206, 239
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	2 cut(s)	172, 242
BciT130I	CCWGG	1 cut(s)	134
BfaI	CTAG	1 cut(s)	104
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	2 cut(s)	288, 375
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	134
BseJI	GATNNNNATC	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	233, 349
BspANI	GGCC	1 cut(s)	290
BspPI	GGATC	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	349
BspT104I	TTCGAA	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	233, 349
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	3 cut(s)	121, 199, 206
Bst6I	CTCTTC	3 cut(s)	54, 349, 369
BstBI	TTCGAA	1 cut(s)	37
BstKTI	GATC	2 cut(s)	236, 352
BstMBI	GATC	2 cut(s)	233, 349
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	288, 375
Csp6I	GTAC	2 cut(s)	187, 223
CviAII	CATG	2 cut(s)	58, 285
CviJI	RGCY	8 cut(s)	44, 116, 140, 159, 212, 290, 315, 359
CviKI_1	RGCY	8 cut(s)	44, 116, 140, 159, 212, 290, 315, 359
CviQI	GTAC	2 cut(s)	187, 223
DpnI	GATC	2 cut(s)	235, 351
DpnII	GATC	2 cut(s)	233, 349
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	54, 349, 369
EarI	CTCTTC	3 cut(s)	54, 349, 369
Eco47I	GGWCC	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	61, 288
FaiI	YATR	3 cut(s)	59, 286, 382
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FatI	CATG	2 cut(s)	57, 284
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	61, 288
HinfI	GANTC	1 cut(s)	252
HphI	GGTGA	3 cut(s)	157, 160, 234
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	3 cut(s)	121, 199, 206
HpyCH4V	TGCA	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	61, 288
Kzo9I	GATC	2 cut(s)	233, 349
LguI	GCTCTTC	1 cut(s)	349
LpnPI	CCDG	6 cut(s)	119, 138, 146, 203, 329, 358
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	3 cut(s)	68, 152, 262
MalI	GATC	2 cut(s)	235, 351
MboI	GATC	2 cut(s)	233, 349
MboII	GAAGA	3 cut(s)	41, 356, 366
MluCI	AATT	3 cut(s)	15, 26, 341
MseI	TTAA	2 cut(s)	18, 29
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	233, 349
NlaIII	CATG	2 cut(s)	61, 288
NmuCI	GTSAC	2 cut(s)	68, 152
NspV	TTCGAA	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	139
PshBI	ATTAAT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	288, 375
RsaI	GTAC	2 cut(s)	188, 224
RsaNI	GTAC	2 cut(s)	187, 223
RseI	CAYNNNNRTG	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	18, 29
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	233, 349
Sau96I	GGNCC	2 cut(s)	288, 375
ScaI	AGTACT	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	3 cut(s)	46, 361, 377
SfaNI	GCATC	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	15, 26, 341
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	121, 199, 206
TaqI	TCGA	3 cut(s)	37, 276, 352
TasI	AATT	3 cut(s)	15, 26, 341
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	18, 29
Tru9I	TTAA	2 cut(s)	18, 29
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	68, 152
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	2 cut(s)	68, 152
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	375
VspI	ATTAAT	1 cut(s)	18
XspI	CTAG	1 cut(s)	104
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.