Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001316

Physical Location & Seq

Genomic Coordinates Reverse (-)

59155897 .. 59163383

Gene Structure 7487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG395500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCCTCCTCCTCACGGCGCCCAACATACACTTTCACGATCGGTCAACATTTAGAGGGTGATTATTACAAATGTACATTGACCAACAGCTGTGACGATTGGGTCTGTCAAGTTAAACCATCTTGTCTAGTGCCAAAAGCCACTGTTCCTGAAATCCAGGCAGCCACATTGGTGAGTGACGGCTACATCACCAACAACACAAGAAGTGAGTACTCTTTGACGGTTTACTGTCGGGCTAAACTGGAGTACCCCAAAGGATCAGCATCACCACCAAGATTCGCCGTAGTTACAGAGTCGTTCAATTGCACATGGGCCACTTGGTTTCACAAACACTTGAGCCAGATTACAACAGCAAACAAGGACAAATTAGCAGATCGAAGAGCTACTCTTCTTATCAGGAGTTTAATCTCTGGAGCTGATGATATGCTTTTCAATTCCTCAACCTCTCACAATATGGACCCCAACCACATATACATTGTTGGCAACTCAGTCAAATTCGCTCACTTTGACAAGGTAACAAGAAGTCGAGATGATCAACAACAAAGCGTCTTTCAGCTTCTGAGAGCTTCTTTGCCACAGAATGTTCTAACTGGAGAGCTGTTACACTTCATTGGCCTACAAACAAACTGTACAAGAGAGAGATTCTTATTCTATAGGCTCCATCCAGGGATCTCCAATGGAGATGAAATGTGCTCCCTAAGACTTCACTCCTTTGAAACATCAAAAATTCAAGGACTTGGTCTGGCAAATAAAATTCTCAACAAATCTAGAGACACTGCCTATACTTCAATTGTAAAACTGTGGAACAAGCATTGGCACAATAATTGGCTGTTGAGGATTACCTCAACGAGGCTGAGAGCTTTGGGCTGCTACTCTCTTTATTTGAATAAGAAGAAACCCCTACCAGTTGCAGACTTTGTGAATTTCAGCCGGGCTGCTGTTGAGCATGCCAATGATCAAAAAACTATGATTGGTGGCATTTCGAAACGCTTGATTTACATTACGAGAATCTTTCCATATAATTTTCTGGAGCAAAGTTTTACTGGATTGGAACGGCAAAGGCAATCCTCAAGTGCTGTGGATGAAGAGTTGAAGACGTACCAGACAAAGGCATCTGTTTTGTATTTGAAAAATTGTAATGTGAAACTGCTAAATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

44.09

Weight (kDa)

9.43

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT1G67520 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030 AT3G16030
fragaria_vesca	FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370 FvH4_6g31370
prunus_persica	Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1 Prupe.3G070000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0138071
rosa_laevigata	RLG00000019698 RLG00000019716 RLG00000019717 RLG00000019722
rosa_multiflora	Rmu_sc0008250.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106510 Rroxscaffold_2G00106540
rosa_rugosa	Rorug02G0348700 Rorug02G0349200 Rorug02G0349300 Rorug02G0349300 Rorug02G0349400
rosa_samantha	Rh2AG395500 Rh2AG396100 Rh2BG402500 Rh2BG402600 Rh2BG410400 Rh2CG382000 Rh2CG382600 Rh2DG417300 Rh2DG417400 Rh2DG417900
rosa_wichuraiana	Rw2G032340 Rw2G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	18
AclWI	GGATC	2 cut(s)	265, 677
AcsI	RAATTY	4 cut(s)	494, 726, 753, 922
AcyI	GRCGYC	1 cut(s)	19
AfaI	GTAC	5 cut(s)	76, 212, 248, 631, 1100
AfiI	CCNNNNNNNGG	3 cut(s)	15, 849, 1108
AgsI	TTSAA	8 cut(s)	301, 433, 716, 731, 789, 886, 1093, 1129
AjnI	CCWGG	2 cut(s)	156, 664
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	7 cut(s)	90, 383, 416, 556, 566, 598, 860
AluI	AGCT	7 cut(s)	90, 383, 416, 556, 566, 598, 860
Alw21I	GWGCWC	1 cut(s)	695
Alw26I	GTCTC	1 cut(s)	765
AlwI	GGATC	2 cut(s)	265, 677
AlwNI	CAGNNNCTG	1 cut(s)	559
AoxI	GGCC	3 cut(s)	3, 312, 613
ApeKI	GCWGC	3 cut(s)	161, 867, 935
ApoI	RAATTY	4 cut(s)	494, 726, 753, 922
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	312, 457
AsuC2I	CCSGG	1 cut(s)	932
AsuHPI	GGTGA	4 cut(s)	71, 181, 184, 258
AsuII	TTCGAA	1 cut(s)	983
AvaII	GGWCC	1 cut(s)	457
BaeI	ACNNNNGTAYC	2 cut(s)	230, 263
BanI	GGYRCC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	1100
Bbv12I	GWGCWC	1 cut(s)	695
BbvI	GCAGC	3 cut(s)	173, 854, 922
BccI	CCATC	2 cut(s)	127, 669
BceAI	ACGGC	4 cut(s)	32, 196, 266, 1070
BciT130I	CCWGG	2 cut(s)	158, 666
BclI	TGATCA	2 cut(s)	532, 955
BcnI	CCSGG	1 cut(s)	932
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	2 cut(s)	128, 768
BfmI	CTRYAG	1 cut(s)	652
BfoI	RGCGCY	1 cut(s)	22
BisI	GCNGC	3 cut(s)	162, 868, 936
BlsI	GCNGC	3 cut(s)	163, 869, 937
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	3 cut(s)	158, 666, 932
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	312, 457
BmiI	GGNNCC	3 cut(s)	20, 459, 659
BmrFI	CCNGG	3 cut(s)	158, 666, 932
BmsI	GCATC	2 cut(s)	272, 1121
BpiI	GAAGAC	1 cut(s)	1100
BpmI	CTGGAG	4 cut(s)	263, 432, 612, 1049
Bpu14I	TTCGAA	1 cut(s)	983
BpuEI	CTTGAG	2 cut(s)	355, 1054
BpuMI	CCSGG	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 849, 1108
Bse1I	ACTGG	4 cut(s)	246, 595, 905, 1048
Bse8I	GATNNNNATC	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	158, 666
BseDI	CCNNGG	1 cut(s)	665
BseGI	GGATG	2 cut(s)	661, 1087
BseJI	GATNNNNATC	1 cut(s)	262
BseLI	CCNNNNNNNGG	3 cut(s)	15, 849, 1108
BseMII	CTCAG	3 cut(s)	501, 551, 845
BseNI	ACTGG	4 cut(s)	246, 595, 905, 1048
BseXI	GCAGC	3 cut(s)	173, 854, 922
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	5, 314, 615
BshNI	GGYRCC	1 cut(s)	18
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	695
BsiSI	CCGG	1 cut(s)	931
BslI	CCNNNNNNNGG	3 cut(s)	15, 849, 1108
BsmAI	GTCTC	1 cut(s)	765
BsnI	GGCC	3 cut(s)	5, 314, 615
Bsp119I	TTCGAA	1 cut(s)	983
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp1407I	TGTACA	2 cut(s)	74, 629
Bsp143I	GATC	6 cut(s)	39, 257, 373, 532, 669, 955
BspANI	GGCC	3 cut(s)	5, 314, 615
BspCNI	CTCAG	3 cut(s)	500, 552, 846
BspLI	GGNNCC	3 cut(s)	20, 459, 659
BspPI	GGATC	2 cut(s)	265, 677
BspQI	GCTCTTC	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	983
BspT107I	GGYRCC	1 cut(s)	18
BsrGI	TGTACA	2 cut(s)	74, 629
BsrI	ACTGG	4 cut(s)	246, 595, 905, 1048
BssECI	CCNNGG	1 cut(s)	665
BssMI	GATC	6 cut(s)	39, 257, 373, 532, 669, 955
BssNI	GRCGYC	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	158, 666
Bst4CI	ACNGT	5 cut(s)	145, 223, 230, 629, 801
Bst6I	CTCTTC	3 cut(s)	373, 393, 1080
BstACI	GRCGYC	1 cut(s)	19
BstAUI	TGTACA	2 cut(s)	74, 629
BstBI	TTCGAA	1 cut(s)	983
BstC8I	GCNNGC	1 cut(s)	948
BstDEI	CTNAG	4 cut(s)	487, 560, 698, 854
BstENI	CCTNNNNNAGG	1 cut(s)	847
BstF5I	GGATG	2 cut(s)	661, 1087
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	6 cut(s)	42, 260, 376, 535, 672, 958
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	6 cut(s)	39, 257, 373, 532, 669, 955
BstMCI	CGRYCG	1 cut(s)	42
BstNI	CCWGG	2 cut(s)	158, 666
BstNSI	RCATGY	1 cut(s)	950
BstSCI	CCNGG	3 cut(s)	156, 664, 930
BstSFI	CTRYAG	1 cut(s)	652
BstV1I	GCAGC	3 cut(s)	173, 854, 922
BstV2I	GAAGAC	1 cut(s)	1100
BstX2I	RGATCY	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	669
BsuRI	GGCC	3 cut(s)	5, 314, 615
BtsCI	GGATG	2 cut(s)	661, 1087
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	2 cut(s)	141, 774
Cac8I	GCNNGC	1 cut(s)	948
CaiI	CAGNNNCTG	1 cut(s)	559
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	312, 457
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	5 cut(s)	75, 211, 247, 630, 1099
CspCI	CAANNNNNGTGG	2 cut(s)	1059, 1094
CviAII	CATG	2 cut(s)	309, 947
CviQI	GTAC	5 cut(s)	75, 211, 247, 630, 1099
DdeI	CTNAG	4 cut(s)	487, 560, 698, 854
DinI	GGCGCC	1 cut(s)	20
DpnI	GATC	6 cut(s)	41, 259, 375, 534, 671, 957
DpnII	GATC	6 cut(s)	39, 257, 373, 532, 669, 955
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
Eam1104I	CTCTTC	3 cut(s)	373, 393, 1080
EarI	CTCTTC	3 cut(s)	373, 393, 1080
Eco47I	GGWCC	1 cut(s)	457
EcoNI	CCTNNNNNAGG	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	156, 664
EgeI	GGCGCC	1 cut(s)	20
EheI	GGCGCC	1 cut(s)	20
FaeI	CATG	2 cut(s)	312, 950
FatI	CATG	2 cut(s)	308, 946
FbaI	TGATCA	2 cut(s)	532, 955
Fnu4HI	GCNGC	3 cut(s)	162, 868, 936
FokI	GGATG	2 cut(s)	648, 1094
Fsp4HI	GCNGC	3 cut(s)	162, 868, 936
FspBI	CTAG	2 cut(s)	128, 768
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	3 cut(s)	162, 868, 936
GsuI	CTGGAG	4 cut(s)	263, 432, 612, 1049
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	3 cut(s)	5, 314, 615
HapII	CCGG	1 cut(s)	931
HgaI	GACGC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	312, 950
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	47
HindII	GTYRAC	1 cut(s)	47
HinfI	GANTC	4 cut(s)	276, 293, 642, 1008
HpaII	CCGG	1 cut(s)	931
HphI	GGTGA	4 cut(s)	71, 181, 184, 258
Hpy166II	GTNNAC	2 cut(s)	47, 226
Hpy188I	TCNGA	1 cut(s)	561
Hpy188III	TCNNGA	7 cut(s)	37, 149, 397, 411, 527, 768, 1028
Hpy8I	GTNNAC	2 cut(s)	47, 226
HpyCH4III	ACNGT	5 cut(s)	145, 223, 230, 629, 801
HpyCH4IV	ACGT	1 cut(s)	1097
HpyCH4V	TGCA	2 cut(s)	306, 911
HpyF3I	CTNAG	4 cut(s)	487, 560, 698, 854
HpySE526I	ACGT	1 cut(s)	1097
Hsp92I	GRCGYC	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	312, 950
HspAI	GCGC	1 cut(s)	19
KasI	GGCGCC	1 cut(s)	18
Ksp22I	TGATCA	2 cut(s)	532, 955
Kzo9I	GATC	6 cut(s)	39, 257, 373, 532, 669, 955
LguI	GCTCTTC	1 cut(s)	373
LmnI	GCTCC	4 cut(s)	413, 663, 698, 1030
Lsp1109I	GCAGC	3 cut(s)	173, 854, 922
LweI	GCATC	2 cut(s)	272, 1121
MaeI	CTAG	2 cut(s)	128, 768
MaeII	ACGT	1 cut(s)	1097
MaeIII	GTNAC	5 cut(s)	92, 176, 286, 514, 600
MalI	GATC	6 cut(s)	41, 259, 375, 534, 671, 957
MboI	GATC	6 cut(s)	39, 257, 373, 532, 669, 955
MboII	GAAGA	5 cut(s)	380, 390, 904, 1097, 1105
MfeI	CAATTG	2 cut(s)	301, 789
MflI	RGATCY	1 cut(s)	669
MhlI	GDGCHC	1 cut(s)	695
Mly113I	GGCGCC	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	302
MseI	TTAA	2 cut(s)	114, 404
MslI	CAYNNNNRTG	2 cut(s)	170, 951
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	1 cut(s)	931
MspR9I	CCNGG	3 cut(s)	158, 666, 932
MunI	CAATTG	2 cut(s)	301, 789
MvaI	CCWGG	2 cut(s)	158, 666
NarI	GGCGCC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	932
NdeII	GATC	6 cut(s)	39, 257, 373, 532, 669, 955
NlaIII	CATG	2 cut(s)	312, 950
NlaIV	GGNNCC	3 cut(s)	20, 459, 659
NmuCI	GTSAC	2 cut(s)	92, 176
NspI	RCATGY	1 cut(s)	950
NspV	TTCGAA	1 cut(s)	983
OliI	CACNNNNGTG	1 cut(s)	170
PaeI	GCATGC	1 cut(s)	950
PciSI	GCTCTTC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	276, 642, 1008
PflFI	GACNNNGTC	1 cut(s)	738
PkrI	GCNGC	3 cut(s)	163, 869, 937
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	301
PluTI	GGCGCC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	156, 664
PspGI	CCWGG	2 cut(s)	156, 664
PspN4I	GGNNCC	3 cut(s)	20, 459, 659
PspPI	GGNCC	2 cut(s)	312, 457
PstNI	CAGNNNCTG	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	669
PsyI	GACNNNGTC	1 cut(s)	738
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	90
RsaI	GTAC	5 cut(s)	76, 212, 248, 631, 1100
RsaNI	GTAC	5 cut(s)	75, 211, 247, 630, 1099
RseI	CAYNNNNRTG	2 cut(s)	170, 951
SapI	GCTCTTC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	114, 404
SatI	GCNGC	3 cut(s)	162, 868, 936
Sau3AI	GATC	6 cut(s)	39, 257, 373, 532, 669, 955
Sau96I	GGNCC	2 cut(s)	312, 457
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	158, 666, 932
SduI	GDGCHC	1 cut(s)	695
SfaNI	GCATC	2 cut(s)	272, 1121
SfcI	CTRYAG	1 cut(s)	652
SfoI	GGCGCC	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	983
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	2 cut(s)	170, 951
SmlI	CTYRAG	2 cut(s)	334, 1069
SmoI	CTYRAG	2 cut(s)	334, 1069
SphI	GCATGC	1 cut(s)	950
SspDI	GGCGCC	1 cut(s)	18
SspMI	CTAG	2 cut(s)	128, 768
StyD4I	CCNGG	3 cut(s)	156, 664, 930
TaaI	ACNGT	5 cut(s)	145, 223, 230, 629, 801
TaiI	ACGT	1 cut(s)	1100
TaqI	TCGA	3 cut(s)	376, 526, 983
TaqII	GACCGA	1 cut(s)	32
TatI	WGTACW	3 cut(s)	74, 210, 629
TfiI	GAWTC	3 cut(s)	276, 642, 1008
Tru1I	TTAA	2 cut(s)	114, 404
Tru9I	TTAA	2 cut(s)	114, 404
TscAI	CASTG	2 cut(s)	148, 781
TseFI	GTSAC	2 cut(s)	92, 176
TseI	GCWGC	3 cut(s)	161, 867, 935
Tsp45I	GTSAC	2 cut(s)	92, 176
TspDTI	ATGAA	3 cut(s)	598, 699, 1098
TspRI	CASTG	2 cut(s)	148, 781
Tth111I	GACNNNGTC	1 cut(s)	738
VpaK11BI	GGWCC	1 cut(s)	457
XagI	CCTNNNNNAGG	1 cut(s)	847
XapI	RAATTY	4 cut(s)	494, 726, 753, 922
XbaI	TCTAGA	1 cut(s)	767
XceI	RCATGY	1 cut(s)	950
XspI	CTAG	2 cut(s)	128, 768
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.