Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004241

Physical Location & Seq

Genomic Coordinates Reverse (-)

5829031 .. 5835748

Gene Structure 6718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G078800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2592 bp

ATGAAAAACACGTGGAGGAGAGAGAGAGAGATAGCGAGTACAAGGAAAGGAAGGGGTTCCGAAGTAGCGTACGGCGCTTTTTTCCCGCTCGGTTGGTTGTTCAAAAAGCGTGGGAAACAGCCTTTGCCGATTCTTCGTCTCGACAAAATGGATCGTACCCCTGAAGCCAATCGGATCGCCGCCACCAAGTCATCATCCATTTCCTCGTCTCCGGCTGTGCAAGAGTCTCCTTTCTCCAATTTCCTTAGCAATCTCTCTCCTTTAAATACAGCGACGACAGCCAGTTATACACAAACATTGTTGGGAACTAATTTGCCGACACCGCCAGTTGTGTTTACATCTCCTCATATTAATCTACAGCGAGAAACCAGTTTCTTGGAAAGGGATGATATAGTTGAAGCAGGTTCAGAGGTATACAAAGAATGTAACACAAATATAGTCCAGATTCAGAATCCAAGTTTTGAGGAGGTCCAGTTGTGCAGTCCTTCAGGTTGTGTTGATGAATATCTGGCTGACCCTGTGGAGGTAGACTCTACATGGTCTGCTGATTTACGCTCGCAACGAACTAATGAAGTCCCTCGGTTGTTACACAGTGGTTTTGCCCCTGGCGAAGAATCCAATACCGAAGTTTGTGATATTATGTTTGGTAGCCCAGAGAATGAAGCCGTTTTATTATCAGATCAAGCTGAAAAGAATCTGCCTTTAAGTTCACTTGAAATGAGTCAAGCTGCAATCAATCAGAGGGATGGTAAAAAGACTGAAGAGCTCTCAAGGTTTATATTTGAAAAAGTCAAGGAGTCTGATGTAAATGCATGTCTTGTTTCCAGAGCACAAAATTGTGGAGAGAATGCAGCTAAGGTGAATTTGCACAGGGCAGGTTGTCAATATGATGAAAAAAATGCTAGTAGTCAGTCACGCGAAGATTCAAATGAGTGCAAGCAAAGAGTACAAAAAGGATTCGTTAAGGAGGGTGGTCAAAATGAACGTGGTATACGTAGGCATCTTCAATTTGAGGCTGCAAAAGCGTATAAGTTCACTATCCTTGGTAACAGTGAGAGTCCTAATAGCCTGACACATGATGCTACCAATTCAAGGTCACCATCTATTCTAACAAACTTGAAGAGTCTAGCTTCCTCTCATTTCGATAACAGAGCCTCAAGCAGTCTGCAGGATGTGAGCTGTGACACCTTACAATTCCCTTCCTCCCCCTATGAGTCATTTACATCAGCCCAAATTGGTGTAAACTCTACCACCTCCGCTCCCATCCATTCTGTTATTGGTTTACATCTGAATCGCATTTCTAGATCTACATCCTTGAGCTCCGATATCTTTTCAAGCAAGAAATCAATTGGGTATCTGAGTATGCCAGAGCAGATGCTAGAGCATGGCAGCAACAACATAGCAACGAACTCAAGTAGTATCTTGACTTCAGCTGTATCTGGAAAAATTTATGTTCATGTGGCCAGTGGTCAGCAGGAAAGCCAAGCTGTTACTGAAGCTAATTCTTTCACTTTTCATTCTACGGATACTATGAAGCCTCCATGTCATTCTATGCTCGTTGACCAGGAGACAGCTCCTTGTGAGGTGGGTATGTCTGCTTCACAGGAGACTGATGAGGTTGAGGAGTTAAACCAACTGAGCCCTAAAAGGAAAAGGAGGAGAGATGCATACATGAGTGAGGGCTGCAAACGTTGCAACTGTAGGAGGTCTAAGTGCTTGAAACTTTATTGTGAGTGCTTTGCAGCTGGCGTTTATTGTGTGGATTCTTGTGCATGTGTAAACTGCTATAACAAGCCTGAGTTTGAGGACACAGTTCTTGATATACGTCAGCAAATTGAAGCTCGTAATCCACTTGCATTTACTCCAAAAGTTGTCGACAATGCCATTGATTCTTCGCCCAACTTTACGGAAGAACAGGACTTGACGACCCCATCCTCAGCCAGGCACAAGAGAGGTTGCAATTGCAAGAAGTCAAAGTGTCTGAAAAGATACTGTGAATGCTTCCAGGCTAAAGTTGGATGTTCCAGCGCGTGTCGATGTGAGGGTTGCAAAAATACGTTTGGCGTTACTCCAGAACCAGTATATAACAGAGCTAAAAAGTGGGAAGCCCACCCTGCTGAGAAGCTGGATAATGTGAAGGGTGCTATTGCTTGCATCAAGGCCCCAGGTATCATTCATTACTCACCGACATGGGAAGGAATTTCTGATATAAGCAAGCTTACACCTTTGTCACATCCTTGCTCACGCACAGCGTTTTCTTCAGCTTCATCAAGTAACTCTGCAAAAATTCCACAAGCCCAGTTGCCATCAAGTCAGCTTCAGCCATCAGGTGCACATTATGACATACCCTATGATGATACACCTGAGATACTCGAGGAAACTTCCAACCCCACCAAGGTTGTAAGGGCTAGCTCACCAAATCAGAAACGTGTGTCACCTCCACAATCCCGATCCCGGTTAAGAGAAAGATCTCCAACAGGCTTGAGAAGTGGCCGCAAATTCATTTTGCAGGCTATGCCTTCTTTCCCTCCTCTTACACCGCACCGTAATTCCAAAGAAGGCACTAATGAAATTGAGAATGATGATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

864

Amino Acids

95.18

Weight (kDa)

7.42

Isoelectric Point (pI)

64.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004241)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420
prunus_persica	Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136761
rosa_laevigata	RLG00000019570
rosa_multiflora	Rmu_co8313053.1_g000001 Rmu_sc0001299.1_g000020
rosa_roxburghii	Rroxscaffold_2G00108090
rosa_rugosa	Rorug02G0332900 Rorug02G0333000
rosa_samantha	Rh2AG383700 Rh2BG390400 Rh2CG370200 Rh2DG407000
rosa_wichuraiana	Rw2G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	392, 866
AccBSI	CCGCTC	2 cut(s)	88, 1259
AccI	GTMKAC	4 cut(s)	414, 528, 991, 1875
AccII	CGCG	2 cut(s)	918, 2030
AciI	CCGC	6 cut(s)	86, 180, 323, 1257, 2494, 2540
AclI	AACGTT	1 cut(s)	1690
AclWI	GGATC	3 cut(s)	159, 182, 2445
AcoI	YGGCCR	2 cut(s)	1461, 2491
AcsI	RAATTY	5 cut(s)	862, 1446, 2199, 2286, 2498
AcuI	CTGAAG	7 cut(s)	183, 471, 780, 1413, 1515, 2244, 2303
AcvI	CACGTG	1 cut(s)	12
AfaI	GTAC	4 cut(s)	40, 71, 157, 948
AfiI	CCNNNNNNNGG	5 cut(s)	523, 1092, 1941, 2395, 2454
AflIII	ACRYGT	2 cut(s)	9, 2428
AjnI	CCWGG	5 cut(s)	604, 1563, 1940, 2004, 2164
Alw21I	GWGCWC	4 cut(s)	768, 832, 1322, 2335
Alw26I	GTCTC	5 cut(s)	143, 213, 231, 1562, 1601
Alw44I	GTGCAC	1 cut(s)	2331
AlwI	GGATC	3 cut(s)	159, 182, 2445
Ama87I	CYCGRG	1 cut(s)	2372
AoxI	GGCC	3 cut(s)	1461, 2160, 2491
ApaLI	GTGCAC	1 cut(s)	2331
ApeKI	GCWGC	6 cut(s)	728, 851, 1016, 1389, 1683, 1742
ApoI	RAATTY	5 cut(s)	862, 1446, 2199, 2286, 2498
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	77, 2030
AspS9I	GGNCC	2 cut(s)	469, 2161
AsuC2I	CCSGG	1 cut(s)	2455
AsuHPI	GGTGA	5 cut(s)	871, 1089, 2175, 2406, 2427
AsuNHI	GCTAGC	1 cut(s)	2408
AvaI	CYCGRG	1 cut(s)	2372
AvaII	GGWCC	1 cut(s)	469
BaeGI	GKGCMC	1 cut(s)	2335
BalI	TGGCCA	1 cut(s)	1463
BanII	GRGCYC	3 cut(s)	768, 1322, 1643
BarI	GAAGNNNNNNTAC	4 cut(s)	1411, 1443, 1582, 1614
BbrPI	CACGTG	1 cut(s)	12
Bbv12I	GWGCWC	4 cut(s)	768, 832, 1322, 2335
BbvCI	CCTCAGC	1 cut(s)	1936
BbvI	GCAGC	6 cut(s)	715, 863, 1003, 1401, 1670, 1754
BccI	CCATC	6 cut(s)	740, 1108, 1271, 1939, 2314, 2332
BceAI	ACGGC	2 cut(s)	88, 650
BciT130I	CCWGG	5 cut(s)	606, 1565, 1942, 2006, 2166
BciVI	GTATCC	1 cut(s)	1519
BcnI	CCSGG	1 cut(s)	2455
BcoDI	GTCTC	5 cut(s)	143, 213, 231, 1562, 1601
BfaI	CTAG	5 cut(s)	903, 1127, 1302, 1379, 2409
BfmI	CTRYAG	3 cut(s)	356, 1166, 1699
BfoI	RGCGCY	1 cut(s)	78
BfuAI	ACCTGC	2 cut(s)	392, 866
BfuI	GTATCC	1 cut(s)	1519
BglII	AGATCT	2 cut(s)	1304, 2468
BisI	GCNGC	8 cut(s)	180, 729, 852, 1017, 1390, 1684, 1743, 2494
BlsI	GCNGC	8 cut(s)	181, 730, 853, 1018, 1391, 1685, 1744, 2495
Bme1390I	CCNGG	6 cut(s)	606, 1565, 1942, 2006, 2166, 2455
Bme18I	GGWCC	1 cut(s)	469
BmeT110I	CYCGRG	1 cut(s)	2372
BmgT120I	GGNCC	2 cut(s)	469, 2161
BmiI	GGNNCC	2 cut(s)	58, 2163
BmrFI	CCNGG	6 cut(s)	606, 1565, 1942, 2006, 2166, 2455
BmrI	ACTGGG	1 cut(s)	2293
BmsI	GCATC	5 cut(s)	1009, 1069, 1365, 1654, 2163
BmtI	GCTAGC	1 cut(s)	2412
BmuI	ACTGGG	1 cut(s)	2293
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	1 cut(s)	2055
Bpu10I	CCTNAGC	3 cut(s)	245, 855, 1936
BpuEI	CTTGAG	5 cut(s)	754, 1141, 1336, 1396, 2503
BpuMI	CCSGG	1 cut(s)	2455
BsaAI	YACGTR	2 cut(s)	12, 995
BsaBI	GATNNNNATC	2 cut(s)	504, 1309
BsaJI	CCNNGG	5 cut(s)	578, 604, 1042, 2164, 2394
BsaXI	ACNNNNNCTCC	4 cut(s)	458, 488, 1243, 1273
Bsc4I	CCNNNNNNNGG	5 cut(s)	523, 1092, 1941, 2395, 2454
Bse1I	ACTGG	7 cut(s)	282, 326, 369, 472, 1464, 2078, 2299
Bse8I	GATNNNNATC	2 cut(s)	504, 1309
BseBI	CCWGG	5 cut(s)	606, 1565, 1942, 2006, 2166
BseDI	CCNNGG	5 cut(s)	578, 604, 1042, 2164, 2394
BseGI	GGATG	9 cut(s)	194, 391, 751, 1177, 1263, 1310, 1931, 2024, 2233
BseJI	GATNNNNATC	2 cut(s)	504, 1309
BseLI	CCNNNNNNNGG	5 cut(s)	523, 1092, 1941, 2395, 2454
BseMII	CTCAG	6 cut(s)	1349, 1628, 1788, 1950, 2109, 2355
BseNI	ACTGG	7 cut(s)	282, 326, 369, 472, 1464, 2078, 2299
BseRI	GAGGAG	6 cut(s)	31, 333, 479, 1637, 1672, 2520
BseSI	GKGCMC	1 cut(s)	2335
BseXI	GCAGC	6 cut(s)	715, 863, 1003, 1401, 1670, 1754
BsgI	GTGCAG	1 cut(s)	499
Bsh1236I	CGCG	2 cut(s)	918, 2030
BshFI	GGCC	3 cut(s)	1463, 2162, 2493
BsiHKAI	GWGCWC	4 cut(s)	768, 832, 1322, 2335
BsiHKCI	CYCGRG	1 cut(s)	2372
BsiSI	CCGG	2 cut(s)	212, 2455
BsiWI	CGTACG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	5 cut(s)	523, 1092, 1941, 2395, 2454
BsmAI	GTCTC	5 cut(s)	143, 213, 231, 1562, 1601
BsmBI	CGTCTC	2 cut(s)	143, 213
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	2 cut(s)	853, 2003
BsnI	GGCC	3 cut(s)	1463, 2162, 2493
BsoBI	CYCGRG	1 cut(s)	2372
Bsp1286I	GDGCHC	5 cut(s)	768, 832, 1322, 1643, 2335
Bsp143I	GATC	6 cut(s)	151, 174, 679, 1304, 2450, 2468
BspACI	CCGC	6 cut(s)	86, 180, 323, 1257, 2494, 2540
BspANI	GGCC	3 cut(s)	1463, 2162, 2493
BspCNI	CTCAG	6 cut(s)	1350, 1629, 1789, 1949, 2110, 2356
BspFNI	CGCG	2 cut(s)	918, 2030
BspLI	GGNNCC	2 cut(s)	58, 2163
BspMAI	CTGCAG	1 cut(s)	1170
BspMI	ACCTGC	2 cut(s)	392, 866
BspOI	GCTAGC	1 cut(s)	2412
BspPI	GGATC	3 cut(s)	159, 182, 2445
BspQI	GCTCTTC	1 cut(s)	756
BsrBI	CCGCTC	2 cut(s)	88, 1259
BsrI	ACTGG	7 cut(s)	282, 326, 369, 472, 1464, 2078, 2299
BssECI	CCNNGG	5 cut(s)	578, 604, 1042, 2164, 2394
BssMI	GATC	6 cut(s)	151, 174, 679, 1304, 2450, 2468
BssNAI	GTATAC	2 cut(s)	415, 992
BssT1I	CCWWGG	2 cut(s)	1042, 2394
Bst1107I	GTATAC	2 cut(s)	415, 992
Bst2UI	CCWGG	5 cut(s)	606, 1565, 1942, 2006, 2166
Bst4CI	ACNGT	6 cut(s)	593, 1052, 1700, 1813, 1994, 2546
Bst6I	CTCTTC	2 cut(s)	756, 1115
BstAPI	GCANNNNNTGC	2 cut(s)	1692, 2515
BstBAI	YACGTR	2 cut(s)	12, 995
BstC8I	GCNNGC	7 cut(s)	557, 938, 1747, 2152, 2216, 2410, 2511
BstDEI	CTNAG	9 cut(s)	245, 855, 1358, 1637, 1710, 1797, 1936, 2118, 2364
BstEII	GGTNACC	1 cut(s)	1095
BstENI	CCTNNNNNAGG	1 cut(s)	1939
BstF5I	GGATG	9 cut(s)	194, 391, 751, 1177, 1263, 1310, 1931, 2024, 2233
BstFNI	CGCG	2 cut(s)	918, 2030
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 2030
BstKTI	GATC	6 cut(s)	154, 177, 682, 1307, 2453, 2471
BstMAI	GTCTC	5 cut(s)	143, 213, 231, 1562, 1601
BstMBI	GATC	6 cut(s)	151, 174, 679, 1304, 2450, 2468
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 278, 322, 1022, 1692, 2114, 2515
BstNI	CCWGG	5 cut(s)	606, 1565, 1942, 2006, 2166
BstNSI	RCATGY	2 cut(s)	816, 1776
BstPI	GGTNACC	1 cut(s)	1095
BstSCI	CCNGG	6 cut(s)	604, 1563, 1940, 2004, 2164, 2453
BstSFI	CTRYAG	3 cut(s)	356, 1166, 1699
BstSLI	GKGCMC	1 cut(s)	2335
BstSNI	TACGTA	1 cut(s)	995
BstUI	CGCG	2 cut(s)	918, 2030
BstV1I	GCAGC	6 cut(s)	715, 863, 1003, 1401, 1670, 1754
BstX2I	RGATCY	2 cut(s)	1304, 2468
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	2 cut(s)	1304, 2468
BstZ17I	GTATAC	2 cut(s)	415, 992
BsuI	GTATCC	1 cut(s)	1519
BsuRI	GGCC	3 cut(s)	1463, 2162, 2493
BtsCI	GGATG	9 cut(s)	194, 391, 751, 1177, 1263, 1310, 1931, 2024, 2233
BtsIMutI	CAGTG	3 cut(s)	598, 1057, 1471
BveI	ACCTGC	2 cut(s)	392, 866
Cac8I	GCNNGC	7 cut(s)	557, 938, 1747, 2152, 2216, 2410, 2511
CfoI	GCGC	2 cut(s)	77, 2030
Cfr13I	GGNCC	2 cut(s)	469, 2161
Csp6I	GTAC	4 cut(s)	39, 70, 156, 947
CspCI	CAANNNNNGTGG	4 cut(s)	91, 126, 2380, 2415
CviAII	CATG	9 cut(s)	537, 813, 1076, 1385, 1457, 1542, 1672, 1773, 2190
CviQI	GTAC	4 cut(s)	39, 70, 156, 947
DdeI	CTNAG	9 cut(s)	245, 855, 1358, 1637, 1710, 1797, 1936, 2118, 2364
DpnI	GATC	6 cut(s)	153, 176, 681, 1306, 2452, 2470
DpnII	GATC	6 cut(s)	151, 174, 679, 1304, 2450, 2468
DraI	TTTAAA	1 cut(s)	264
EaeI	YGGCCR	2 cut(s)	1461, 2491
Eam1104I	CTCTTC	2 cut(s)	756, 1115
EarI	CTCTTC	2 cut(s)	756, 1115
Ecl136II	GAGCTC	2 cut(s)	766, 1320
Eco105I	TACGTA	1 cut(s)	995
Eco130I	CCWWGG	2 cut(s)	1042, 2394
Eco24I	GRGCYC	3 cut(s)	768, 1322, 1643
Eco32I	GATATC	1 cut(s)	1327
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	2 cut(s)	766, 1320
Eco57I	CTGAAG	7 cut(s)	183, 471, 780, 1413, 1515, 2244, 2303
Eco72I	CACGTG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	2372
Eco91I	GGTNACC	1 cut(s)	1095
EcoICRI	GAGCTC	2 cut(s)	766, 1320
EcoNI	CCTNNNNNAGG	1 cut(s)	1939
EcoO109I	RGGNCCY	1 cut(s)	2161
EcoO65I	GGTNACC	1 cut(s)	1095
EcoRII	CCWGG	5 cut(s)	604, 1563, 1940, 2004, 2164
EcoRV	GATATC	1 cut(s)	1327
EcoT14I	CCWWGG	2 cut(s)	1042, 2394
EcoT22I	ATGCAT	2 cut(s)	814, 1669
EcoT38I	GRGCYC	3 cut(s)	768, 1322, 1643
ErhI	CCWWGG	2 cut(s)	1042, 2394
Esp3I	CGTCTC	2 cut(s)	143, 213
FaeI	CATG	9 cut(s)	540, 816, 1079, 1388, 1460, 1545, 1675, 1776, 2193
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	9 cut(s)	536, 812, 1075, 1384, 1456, 1541, 1671, 1772, 2189
FauI	CCCGC	1 cut(s)	93
FblI	GTMKAC	4 cut(s)	414, 528, 991, 1875
Fnu4HI	GCNGC	8 cut(s)	180, 729, 852, 1017, 1390, 1684, 1743, 2494
FokI	GGATG	9 cut(s)	181, 398, 758, 1184, 1250, 1297, 1918, 2031, 2220
FriOI	GRGCYC	3 cut(s)	768, 1322, 1643
Fsp4HI	GCNGC	8 cut(s)	180, 729, 852, 1017, 1390, 1684, 1743, 2494
FspBI	CTAG	5 cut(s)	903, 1127, 1302, 1379, 2409
GlaI	GCGC	2 cut(s)	76, 2029
GluI	GCNGC	8 cut(s)	180, 729, 852, 1017, 1390, 1684, 1743, 2494
GsuI	CTGGAG	1 cut(s)	2055
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	1463, 2162, 2493
HapII	CCGG	2 cut(s)	212, 2455
HhaI	GCGC	2 cut(s)	77, 2030
Hin1II	CATG	9 cut(s)	540, 816, 1079, 1388, 1460, 1545, 1675, 1776, 2193
Hin6I	GCGC	2 cut(s)	75, 2028
HinP1I	GCGC	2 cut(s)	75, 2028
HincII	GTYRAC	2 cut(s)	1561, 1876
HindII	GTYRAC	2 cut(s)	1561, 1876
HindIII	AAGCTT	1 cut(s)	2216
HpaII	CCGG	2 cut(s)	212, 2455
HphI	GGTGA	5 cut(s)	871, 1089, 2175, 2406, 2427
Hpy188III	TCNNGA	9 cut(s)	140, 442, 825, 1302, 1423, 1440, 1817, 2072, 2448
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	7 cut(s)	45, 495, 1209, 2131, 2189, 2529, 2552
HpyCH4III	ACNGT	6 cut(s)	593, 1052, 1700, 1813, 1994, 2546
HpyCH4IV	ACGT	7 cut(s)	11, 985, 994, 1690, 1825, 2057, 2428
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 278, 322, 1022, 1692, 2114, 2515
HpyF3I	CTNAG	9 cut(s)	245, 855, 1358, 1637, 1710, 1797, 1936, 2118, 2364
HpySE526I	ACGT	7 cut(s)	11, 985, 994, 1690, 1825, 2057, 2428
Hsp92II	CATG	9 cut(s)	540, 816, 1079, 1388, 1460, 1545, 1675, 1776, 2193
HspAI	GCGC	2 cut(s)	75, 2028
Kzo9I	GATC	6 cut(s)	151, 174, 679, 1304, 2450, 2468
LguI	GCTCTTC	1 cut(s)	756
LmnI	GCTCC	3 cut(s)	1264, 1325, 1579
Lsp1109I	GCAGC	6 cut(s)	715, 863, 1003, 1401, 1670, 1754
LweI	GCATC	5 cut(s)	1009, 1069, 1365, 1654, 2163
MaeI	CTAG	5 cut(s)	903, 1127, 1302, 1379, 2409
MaeII	ACGT	7 cut(s)	11, 985, 994, 1690, 1825, 2057, 2428
MalI	GATC	6 cut(s)	153, 176, 681, 1306, 2452, 2470
MbiI	CCGCTC	2 cut(s)	88, 1259
MboI	GATC	6 cut(s)	151, 174, 679, 1304, 2450, 2468
MboII	GAAGA	9 cut(s)	125, 623, 773, 932, 995, 1132, 1884, 1922, 2250
MfeI	CAATTG	2 cut(s)	1347, 1960
MflI	RGATCY	2 cut(s)	1304, 2468
MhlI	GDGCHC	5 cut(s)	768, 832, 1322, 1643, 2335
MlsI	TGGCCA	1 cut(s)	1463
MluNI	TGGCCA	1 cut(s)	1463
MlyI	GAGTC	7 cut(s)	233, 524, 730, 806, 1066, 1132, 1223
MmeI	TCCRAC	3 cut(s)	1996, 2409, 2498
Mox20I	TGGCCA	1 cut(s)	1463
Mph1103I	ATGCAT	2 cut(s)	814, 1669
MroXI	GAANNNNTTC	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	1463
MseI	TTAA	6 cut(s)	263, 351, 704, 963, 1628, 2459
MslI	CAYNNNNRTG	1 cut(s)	2188
Msp20I	TGGCCA	1 cut(s)	1463
MspA1I	CMGCKG	2 cut(s)	1433, 1745
MspI	CCGG	2 cut(s)	212, 2455
MspR9I	CCNGG	6 cut(s)	606, 1565, 1942, 2006, 2166, 2455
MunI	CAATTG	2 cut(s)	1347, 1960
Mva1269I	GAATGC	2 cut(s)	853, 2003
MvaI	CCWGG	5 cut(s)	606, 1565, 1942, 2006, 2166
MvnI	CGCG	2 cut(s)	918, 2030
MwoI	GCNNNNNNNGC	7 cut(s)	74, 278, 322, 1022, 1692, 2114, 2515
NciI	CCSGG	1 cut(s)	2455
NdeII	GATC	6 cut(s)	151, 174, 679, 1304, 2450, 2468
NheI	GCTAGC	1 cut(s)	2408
NlaIII	CATG	9 cut(s)	540, 816, 1079, 1388, 1460, 1545, 1675, 1776, 2193
NlaIV	GGNNCC	2 cut(s)	58, 2163
NmuCI	GTSAC	5 cut(s)	912, 1095, 1181, 2229, 2433
NsiI	ATGCAT	2 cut(s)	814, 1669
NspI	RCATGY	2 cut(s)	816, 1776
PaeR7I	CTCGAG	1 cut(s)	2372
PciSI	GCTCTTC	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	2 cut(s)	559, 991
PctI	GAATGC	2 cut(s)	853, 2003
PdmI	GAANNNNTTC	1 cut(s)	55
Pfl23II	CGTACG	1 cut(s)	69
PkrI	GCNGC	8 cut(s)	181, 730, 853, 1018, 1391, 1685, 1744, 2495
PleI	GAGTC	7 cut(s)	232, 524, 729, 805, 1065, 1131, 1222
PmaCI	CACGTG	1 cut(s)	12
PmlI	CACGTG	1 cut(s)	12
PpsI	GAGTC	7 cut(s)	232, 524, 729, 805, 1065, 1131, 1222
Ppu21I	YACGTR	2 cut(s)	12, 995
PshBI	ATTAAT	1 cut(s)	351
Psp124BI	GAGCTC	2 cut(s)	768, 1322
Psp1406I	AACGTT	1 cut(s)	1690
Psp6I	CCWGG	5 cut(s)	604, 1563, 1940, 2004, 2164
PspCI	CACGTG	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	1095
PspGI	CCWGG	5 cut(s)	604, 1563, 1940, 2004, 2164
PspLI	CGTACG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	58, 2163
PspPI	GGNCC	2 cut(s)	469, 2161
PspXI	VCTCGAGB	1 cut(s)	2372
PsrI	GAACNNNNNNTAC	2 cut(s)	975, 1007
PstI	CTGCAG	1 cut(s)	1170
PsuI	RGATCY	2 cut(s)	1304, 2468
PvuII	CAGCTG	2 cut(s)	1433, 1745
RsaI	GTAC	4 cut(s)	40, 71, 157, 948
RsaNI	GTAC	4 cut(s)	39, 70, 156, 947
RseI	CAYNNNNRTG	1 cut(s)	2188
SacI	GAGCTC	2 cut(s)	768, 1322
SalI	GTCGAC	1 cut(s)	1874
SapI	GCTCTTC	1 cut(s)	756
SaqAI	TTAA	6 cut(s)	263, 351, 704, 963, 1628, 2459
SatI	GCNGC	8 cut(s)	180, 729, 852, 1017, 1390, 1684, 1743, 2494
Sau3AI	GATC	6 cut(s)	151, 174, 679, 1304, 2450, 2468
Sau96I	GGNCC	2 cut(s)	469, 2161
SchI	GAGTC	7 cut(s)	233, 524, 730, 806, 1066, 1132, 1223
ScrFI	CCNGG	6 cut(s)	606, 1565, 1942, 2006, 2166, 2455
SduI	GDGCHC	5 cut(s)	768, 832, 1322, 1643, 2335
SfaNI	GCATC	5 cut(s)	1009, 1069, 1365, 1654, 2163
SfcI	CTRYAG	3 cut(s)	356, 1166, 1699
Sfr274I	CTCGAG	1 cut(s)	2372
SinI	GGWCC	1 cut(s)	469
SlaI	CTCGAG	1 cut(s)	2372
SmiMI	CAYNNNNRTG	1 cut(s)	2188
SmlI	CTYRAG	6 cut(s)	769, 1156, 1315, 1411, 2372, 2482
SmoI	CTYRAG	6 cut(s)	769, 1156, 1315, 1411, 2372, 2482
SnaBI	TACGTA	1 cut(s)	995
SsiI	CCGC	6 cut(s)	86, 180, 323, 1257, 2494, 2540
SspMI	CTAG	5 cut(s)	903, 1127, 1302, 1379, 2409
SstI	GAGCTC	2 cut(s)	768, 1322
StyD4I	CCNGG	6 cut(s)	604, 1563, 1940, 2004, 2164, 2453
StyI	CCWWGG	2 cut(s)	1042, 2394
TaaI	ACNGT	6 cut(s)	593, 1052, 1700, 1813, 1994, 2546
TaiI	ACGT	7 cut(s)	14, 988, 997, 1693, 1828, 2060, 2431
TaqI	TCGA	5 cut(s)	141, 1143, 1875, 2035, 2373
TatI	WGTACW	2 cut(s)	38, 946
TauI	GCSGC	2 cut(s)	182, 2496
Tru1I	TTAA	6 cut(s)	263, 351, 704, 963, 1628, 2459
Tru9I	TTAA	6 cut(s)	263, 351, 704, 963, 1628, 2459
TscAI	CASTG	3 cut(s)	598, 1057, 1471
TseFI	GTSAC	5 cut(s)	912, 1095, 1181, 2229, 2433
TseI	GCWGC	6 cut(s)	728, 851, 1016, 1389, 1683, 1742
Tsp45I	GTSAC	5 cut(s)	912, 1095, 1181, 2229, 2433
TspGWI	ACGGA	2 cut(s)	1538, 1922
TspRI	CASTG	3 cut(s)	598, 1057, 1471
VneI	GTGCAC	1 cut(s)	2331
VpaK11BI	GGWCC	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	351
XagI	CCTNNNNNAGG	1 cut(s)	1939
XapI	RAATTY	5 cut(s)	862, 1446, 2199, 2286, 2498
XbaI	TCTAGA	1 cut(s)	1301
XceI	RCATGY	2 cut(s)	816, 1776
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1274, 2012
XhoI	CTCGAG	1 cut(s)	2372
XmiI	GTMKAC	4 cut(s)	414, 528, 991, 1875
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	5 cut(s)	903, 1127, 1302, 1379, 2409
Zsp2I	ATGCAT	2 cut(s)	814, 1669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.