Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8313053.1

Orthogroup ID

OG0004241

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 388

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8313053.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 323 bp

ctggagtattttgtttggattcatgtgcatgtgaaaactgctacaacaagcctgagtttgaggacactgtttttgatgcacgtcagcaaattgaatcccgtaatccgctggcatttgctcccaaagttgtgaagcatgaaatcaactcttcgcctaacattatggtaactcctgttaaagcatttatctttccagggttgcttaattggaaatttgggagtattttgagcttgagaactctttgcaggaagaagcagactggacgaccccatcatcagctaggcacaagagaggttgcaattgcaagaagtcaaagtgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

106

Amino Acids

11.91

Weight (kDa)

9.17

Isoelectric Point (pI)

67.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004241)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420
prunus_persica	Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136761
rosa_laevigata	RLG00000019570
rosa_multiflora	Rmu_co8313053.1_g000001 Rmu_sc0001299.1_g000020
rosa_roxburghii	Rroxscaffold_2G00108090
rosa_rugosa	Rorug02G0332900 Rorug02G0333000
rosa_samantha	Rh2AG383700 Rh2BG390400 Rh2CG370200 Rh2DG407000
rosa_wichuraiana	Rw2G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	94
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	2 cut(s)	230, 279
AluI	AGCT	2 cut(s)	230, 279
ApoI	RAATTY	1 cut(s)	211
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	194
BfaI	CTAG	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	264
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	110
CviAII	CATG	3 cut(s)	23, 29, 136
CviJI	RGCY	3 cut(s)	51, 230, 279
CviKI_1	RGCY	3 cut(s)	51, 230, 279
DdeI	CTNAG	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	26, 32, 139
FaiI	YATR	4 cut(s)	24, 30, 137, 163
FatI	CATG	3 cut(s)	22, 28, 135
FspBI	CTAG	1 cut(s)	280
GsuI	CTGGAG	1 cut(s)	23
Hin1II	CATG	3 cut(s)	26, 32, 139
HinfI	GANTC	2 cut(s)	19, 94
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	28, 79, 245, 298, 304
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	26, 32, 139
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	7 cut(s)	65, 94, 179, 185, 206, 231, 245
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	280
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	165
MboII	GAAGA	2 cut(s)	140, 261
MfeI	CAATTG	1 cut(s)	299
MluCI	AATT	4 cut(s)	89, 204, 211, 299
MnlI	CCTC	2 cut(s)	54, 285
MseI	TTAA	2 cut(s)	176, 203
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	194
MunI	CAATTG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	194
NlaIII	CATG	3 cut(s)	26, 32, 139
NspI	RCATGY	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	19, 94
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	176, 203
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	4 cut(s)	84, 232, 281, 296
SfaNI	GCATC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	4 cut(s)	89, 204, 211, 299
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	1 cut(s)	84
TasI	AATT	4 cut(s)	89, 204, 211, 299
TfiI	GAWTC	2 cut(s)	19, 94
Tru1I	TTAA	2 cut(s)	176, 203
Tru9I	TTAA	2 cut(s)	176, 203
TscAI	CASTG	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	11, 152
TspRI	CASTG	1 cut(s)	72
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	32
XspI	CTAG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.