Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004241

Physical Location & Seq

Genomic Coordinates Forward (+)

41236002 .. 41239548

Gene Structure 3547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0332900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCACAGTTACCCCCAAAGGTTCCAAACATGACCCCATGTTGGCCGGACTTCAGCCACCAAAAGATGTCGTGTTTTGCACCCACCGGCGGCAATGCCGCCTCCCAGAACCCTTGTTGGGTCGACGAGTTCCTCGACTTCTCGTCGGCCAGGCGGGGATCTCACCGGAGATCCGTCAGCGACTCCATCACATTTCTCGAGGCGCCAATGCAGGACGAATGCCGAGCCTCCGGAGCACCCCCGGAGCCCAACAACAACAACAACAACAACAGTCACCATGTTCATGAGTTCGATAGGTTTGACGATGAGCAGTTCATGTCCATGTTTACCACCGATGAAATCAACGCCGCCGCCGCAGCCGCTGCCGGCCCCACCGGGTCGTGCTCGAACCCTTCGACGCCGTCGGATCACAACAGCATTAACGACGACGATGAACACCAGCAGCAGCAGCAGCTTGATGATGGTGACAAGAAGAAGCGAGAGCTGAAGCATGAATCTGAAGAGGCGGAGAGCGAATGCAAATTGGAGGCACAACAAACCCAGAATGGGGATCGCAATGCATCAAAAAACACAACCGGCGACAGAAAAATTGACCCAAAAAGGGTGAAGAGAATCTTGGCAAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTGCAATACATTTCAGAGCTGGAACGCAGTGTTACCTCTCTACAGGCCGAAGTTTCAGTGCTGTCACCGCGAGTTGCGTTTCTAGATCACCAACGGTTGCTGCTAAATGTAGACAACAGTGCTCTCAAACAAAGAATTGCAGCATTGGCTCAGGATAAGATTTTCAAAGATGCTCATCAAGAAGCACTGAAGAGGGAAATAGAGAGACTGCGGCAAGTGTATCACCAACAGAATCTCAAGAAGATGGACAACAACAACATTGAACAATCACCAAACTCGGACACCATAACTGCTCAACATCCTGATGCTGCTGCTGCTGATCAGAAAGAACAACTTCTCAATGTTTCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

336

Amino Acids

37.75

Weight (kDa)

5.76

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	198 - 245	1.4e-08	Basic region leucine zipper
bZIP_1	PF00170	200 - 243	5.4e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004241)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420
prunus_persica	Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136761
rosa_laevigata	RLG00000019570
rosa_multiflora	Rmu_co8313053.1_g000001 Rmu_sc0001299.1_g000020
rosa_roxburghii	Rroxscaffold_2G00108090
rosa_rugosa	Rorug02G0332900 Rorug02G0333000
rosa_samantha	Rh2AG383700 Rh2BG390400 Rh2CG370200 Rh2DG407000
rosa_wichuraiana	Rw2G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AccI	GTMKAC	2 cut(s)	123, 768
AccII	CGCG	1 cut(s)	727
AccIII	TCCGGA	1 cut(s)	230
AclWI	GGATC	4 cut(s)	165, 166, 414, 558
AcoI	YGGCCR	2 cut(s)	44, 147
AcuI	CTGAAG	4 cut(s)	37, 506, 519, 866
AcyI	GRCGYC	2 cut(s)	203, 398
AfiI	CCNNNNNNNGG	6 cut(s)	42, 89, 118, 546, 547, 601
AgsI	TTSAA	2 cut(s)	823, 920
AhdI	GACNNNNNGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AluBI	AGCT	4 cut(s)	454, 484, 658, 676
AluI	AGCT	4 cut(s)	454, 484, 658, 676
Alw21I	GWGCWC	3 cut(s)	238, 386, 781
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	4 cut(s)	165, 166, 414, 558
AlwNI	CAGNNNCTG	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	4 cut(s)	44, 147, 367, 702
Asp700I	GAANNNNTTC	1 cut(s)	990
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	2 cut(s)	242, 376
AsuHPI	GGTGA	9 cut(s)	155, 266, 476, 616, 661, 714, 737, 872, 918
AvaI	CYCGRG	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	249
BarI	GAAGNNNNNNTAC	2 cut(s)	647, 679
Bbv12I	GWGCWC	3 cut(s)	238, 386, 781
BccI	CCATC	3 cut(s)	194, 455, 895
BceAI	ACGGC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	151
BclI	TGATCA	1 cut(s)	976
BcnI	CCSGG	2 cut(s)	242, 376
BcoDI	GTCTC	1 cut(s)	856
BfaI	CTAG	1 cut(s)	740
BfmI	CTRYAG	1 cut(s)	698
BfoI	RGCGCY	1 cut(s)	206
Bme1390I	CCNGG	3 cut(s)	151, 242, 376
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	4 cut(s)	24, 204, 246, 370
BmrFI	CCNGG	3 cut(s)	151, 242, 376
BmsI	GCATC	3 cut(s)	569, 817, 952
Bpu10I	CCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	878
BpuMI	CCSGG	2 cut(s)	242, 376
BsaBI	GATNNNNATC	1 cut(s)	831
BsaHI	GRCGYC	2 cut(s)	203, 398
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	2 cut(s)	165, 230
Bsc4I	CCNNNNNNNGG	6 cut(s)	42, 89, 118, 546, 547, 601
Bse118I	RCCGGY	3 cut(s)	86, 365, 575
Bse3DI	GCAATG	2 cut(s)	100, 562
Bse8I	GATNNNNATC	1 cut(s)	831
BseAI	TCCGGA	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	955
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	6 cut(s)	42, 89, 118, 546, 547, 601
BseMI	GCAATG	2 cut(s)	100, 562
BseMII	CTCAG	1 cut(s)	821
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	727
BshFI	GGCC	4 cut(s)	46, 149, 369, 704
BshNI	GGYRCC	1 cut(s)	202
BsiHKAI	GWGCWC	3 cut(s)	238, 386, 781
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	8 cut(s)	47, 87, 166, 231, 242, 366, 375, 576
BslI	CCNNNNNNNGG	6 cut(s)	42, 89, 118, 546, 547, 601
BsmAI	GTCTC	1 cut(s)	856
BsmI	GAATGC	2 cut(s)	224, 521
BsnI	GGCC	4 cut(s)	46, 149, 369, 704
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	4 cut(s)	238, 249, 386, 781
Bsp13I	TCCGGA	1 cut(s)	230
Bsp143I	GATC	7 cut(s)	158, 170, 406, 550, 641, 742, 976
BspANI	GGCC	4 cut(s)	46, 149, 369, 704
BspCNI	CTCAG	1 cut(s)	820
BspEI	TCCGGA	1 cut(s)	230
BspFNI	CGCG	1 cut(s)	727
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	4 cut(s)	24, 204, 246, 370
BspPI	GGATC	4 cut(s)	165, 166, 414, 558
BspT107I	GGYRCC	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	100, 562
BsrFI	RCCGGY	3 cut(s)	86, 365, 575
BssAI	RCCGGY	3 cut(s)	86, 365, 575
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	7 cut(s)	158, 170, 406, 550, 641, 742, 976
BssNI	GRCGYC	2 cut(s)	203, 398
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	4 cut(s)	9, 272, 753, 776
Bst6I	CTCTTC	3 cut(s)	495, 602, 842
BstACI	GRCGYC	2 cut(s)	203, 398
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	1 cut(s)	807
BstF5I	GGATG	1 cut(s)	955
BstFNI	CGCG	1 cut(s)	727
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	7 cut(s)	161, 173, 409, 553, 644, 745, 979
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	7 cut(s)	158, 170, 406, 550, 641, 742, 976
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	3 cut(s)	149, 240, 374
BstSFI	CTRYAG	1 cut(s)	698
BstUI	CGCG	1 cut(s)	727
BstX2I	RGATCY	2 cut(s)	158, 170
BstYI	RGATCY	2 cut(s)	158, 170
BsuRI	GGCC	4 cut(s)	46, 149, 369, 704
BtsCI	GGATG	1 cut(s)	955
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	4 cut(s)	691, 720, 781, 842
Cac8I	GCNNGC	1 cut(s)	367
CaiI	CAGNNNCTG	1 cut(s)	362
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	3 cut(s)	86, 365, 575
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	1 cut(s)	406
CviAII	CATG	7 cut(s)	31, 39, 278, 284, 316, 322, 491
DdeI	CTNAG	1 cut(s)	807
DinI	GGCGCC	1 cut(s)	204
DpnI	GATC	7 cut(s)	160, 172, 408, 552, 643, 744, 978
DpnII	GATC	7 cut(s)	158, 170, 406, 550, 641, 742, 976
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	2 cut(s)	44, 147
Eam1104I	CTCTTC	3 cut(s)	495, 602, 842
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EarI	CTCTTC	3 cut(s)	495, 602, 842
EciI	GGCGGA	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	249
Eco57I	CTGAAG	4 cut(s)	37, 506, 519, 866
Eco88I	CYCGRG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	204
EheI	GGCGCC	1 cut(s)	204
FaeI	CATG	7 cut(s)	34, 42, 281, 287, 319, 325, 494
FaiI	YATR	8 cut(s)	32, 40, 279, 285, 317, 323, 492, 944
FalI	AAGNNNNNCTT	4 cut(s)	599, 631, 975, 1007
FatI	CATG	7 cut(s)	30, 38, 277, 283, 315, 321, 490
FauI	CCCGC	1 cut(s)	147
FbaI	TGATCA	1 cut(s)	976
FblI	GTMKAC	2 cut(s)	123, 768
FokI	GGATG	1 cut(s)	942
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	740
GlaI	GCGC	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	4 cut(s)	46, 149, 369, 704
HapII	CCGG	8 cut(s)	47, 87, 166, 231, 242, 366, 375, 576
HgaI	GACGC	1 cut(s)	406
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	2 cut(s)	203, 398
Hin1II	CATG	7 cut(s)	34, 42, 281, 287, 319, 325, 494
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	4 cut(s)	182, 494, 612, 889
HpaII	CCGG	8 cut(s)	47, 87, 166, 231, 242, 366, 375, 576
HphI	GGTGA	9 cut(s)	155, 266, 476, 616, 661, 714, 737, 872, 918
Hpy166II	GTNNAC	3 cut(s)	124, 327, 769
Hpy188I	TCNGA	5 cut(s)	406, 499, 673, 937, 981
Hpy188III	TCNNGA	9 cut(s)	197, 231, 284, 740, 809, 836, 895, 959, 1008
Hpy8I	GTNNAC	3 cut(s)	124, 327, 769
Hpy99I	CGWCG	6 cut(s)	128, 148, 400, 406, 428, 431
HpyAV	CCTTC	1 cut(s)	402
HpyCH4III	ACNGT	4 cut(s)	9, 272, 753, 776
HpyCH4V	TGCA	7 cut(s)	80, 211, 519, 560, 635, 661, 797
HpyF3I	CTNAG	1 cut(s)	807
Hsp92I	GRCGYC	2 cut(s)	203, 398
Hsp92II	CATG	7 cut(s)	34, 42, 281, 287, 319, 325, 494
HspAI	GCGC	1 cut(s)	203
KasI	GGCGCC	1 cut(s)	202
Kpn2I	TCCGGA	1 cut(s)	230
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	7 cut(s)	158, 170, 406, 550, 641, 742, 976
LmnI	GCTCC	2 cut(s)	233, 244
LweI	GCATC	3 cut(s)	569, 817, 952
MaeI	CTAG	1 cut(s)	740
MaeIII	GTNAC	5 cut(s)	9, 272, 464, 688, 720
MalI	GATC	7 cut(s)	160, 172, 408, 552, 643, 744, 978
MboI	GATC	7 cut(s)	158, 170, 406, 550, 641, 742, 976
MboII	GAAGA	6 cut(s)	484, 512, 619, 859, 910, 996
MflI	RGATCY	2 cut(s)	158, 170
MhlI	GDGCHC	4 cut(s)	238, 249, 386, 781
MluCI	AATT	3 cut(s)	521, 588, 792
Mly113I	GGCGCC	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	9 cut(s)	112, 143, 193, 238, 496, 520, 645, 703, 843
Mph1103I	ATGCAT	1 cut(s)	562
MroI	TCCGGA	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	990
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	3 cut(s)	282, 320, 960
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	8 cut(s)	47, 87, 166, 231, 242, 366, 375, 576
MspR9I	CCNGG	3 cut(s)	151, 242, 376
Mva1269I	GAATGC	2 cut(s)	224, 521
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	727
NaeI	GCCGGC	1 cut(s)	367
NarI	GGCGCC	1 cut(s)	203
NciI	CCSGG	2 cut(s)	242, 376
NdeII	GATC	7 cut(s)	158, 170, 406, 550, 641, 742, 976
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	7 cut(s)	34, 42, 281, 287, 319, 325, 494
NlaIV	GGNNCC	4 cut(s)	24, 204, 246, 370
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	3 cut(s)	272, 464, 720
NsiI	ATGCAT	1 cut(s)	562
PaeR7I	CTCGAG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 392
PctI	GAATGC	2 cut(s)	224, 521
PdiI	GCCGGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	990
PfeI	GAWTC	3 cut(s)	494, 612, 889
PflFI	GACNNNGTC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	176
PluTI	GGCGCC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	4 cut(s)	24, 204, 246, 370
PspPI	GGNCC	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	158, 170
PsyI	GACNNNGTC	1 cut(s)	400
RseI	CAYNNNNRTG	3 cut(s)	282, 320, 960
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	7 cut(s)	158, 170, 406, 550, 641, 742, 976
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	3 cut(s)	151, 242, 376
SduI	GDGCHC	4 cut(s)	238, 249, 386, 781
SetI	ASST	7 cut(s)	24, 299, 456, 486, 660, 678, 695
SfaNI	GCATC	3 cut(s)	569, 817, 952
SfcI	CTRYAG	1 cut(s)	698
SfoI	GGCGCC	1 cut(s)	204
Sfr274I	CTCGAG	1 cut(s)	197
SgrAI	CRCCGGYG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	3 cut(s)	282, 320, 960
SmlI	CTYRAG	2 cut(s)	197, 893
SmoI	CTYRAG	2 cut(s)	197, 893
Sse9I	AATT	3 cut(s)	521, 588, 792
SspDI	GGCGCC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	740
StyD4I	CCNGG	3 cut(s)	149, 240, 374
TaaI	ACNGT	4 cut(s)	9, 272, 753, 776
TaqI	TCGA	6 cut(s)	123, 135, 198, 291, 386, 395
TasI	AATT	3 cut(s)	521, 588, 792
TauI	GCSGC	7 cut(s)	93, 101, 350, 353, 356, 362, 871
TfiI	GAWTC	3 cut(s)	494, 612, 889
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	4 cut(s)	691, 720, 781, 849
TseFI	GTSAC	3 cut(s)	272, 464, 720
Tsp45I	GTSAC	3 cut(s)	272, 464, 720
TspDTI	ATGAA	5 cut(s)	272, 304, 351, 447, 507
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	4 cut(s)	691, 720, 781, 849
Tth111I	GACNNNGTC	1 cut(s)	400
XbaI	TCTAGA	1 cut(s)	739
XhoI	CTCGAG	1 cut(s)	197
XmiI	GTMKAC	2 cut(s)	123, 768
XmnI	GAANNNNTTC	1 cut(s)	990
XspI	CTAG	1 cut(s)	740
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.