Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004241

Physical Location & Seq

Genomic Coordinates Forward (+)

53687459 .. 53692091

Gene Structure 4633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGGACGGGTCACCGGAAACGAATCGGGTTGCCGCCGCCGCCTCATCGCCGGCCCAAGCCTCGTCTCCGTCTGTGCAAGAGTCGCCTTTCTCCAATTTCCTTAGCAATCTCACTCCTATCAATACAGTGAAGAGTGATAGTTATTCACAAAGATTAGTAGGAGCCTTCTTCCCAACGCCACCAGTTGTCTTTACATCTCCCCATATTGATCTGGAGCGCGAAACCAGTTTCTTGGAAAGGAATGATATAGTTGAAGCAGGTTATAAAGAATGTAATACAACTATAGTCCAGAACACTAGTTTTGAGAAGGAGGTCCAGTTGTGCAGTGCATCAGGGTGTATCGATGAATATTTGGCTGACCCTGCAAAGGTAGACTGTACAAGTTCTGCTGCTATACAGAGCGGTATCAATGCCAGCGAAGAATCCAATACAGAAGTTCATGAGGTTATTGATGGTAGTACAAAGAGTGAACCCCTTACAACATTGAATCAAGCTGAAGTGGATCTGCCTTTACCTTCACTGACACAGATTGAAACCACAATCATTGAGAAGACTGATAAAAATAGAGTAGATCTTGTCACCCGAGCACAAAGCCATGGACAGAATACAGCTAAGGAGGTTAGTCAACACCACCGTGGTATACGTAGGCATCTCCAATTTGAGACTGCAGTAGCCCAGAAGAGTTCTAAGTTTGGTAACCATCGAAGTCTTTGCAGTCTGACGCATGATACTGACAATTTAAGGTCAGAATCCAAACTAACAAACTTGAAGACTCTAGCTTCTTCTCATTTAGATAGCAAAGCCTTCAGCAGTCCGCAGGGTGTTAGCTGTGACACTTCACAATTGTCTTCCGGCCTCTGTGAGTCAGTTAGATCCAGCCAAATTGGTGGAAACTCTTCCACCTCAGCTCCTATTCGTTCTGGTATTGGTTTACATCTGAATAGCATTACTCGATCTACATCCATGCGCTCAGATGTATTGCCAAGCAGGAAAGCAACTGGTTGTCTAAGTACACCGGACCAGATGTTGGAGCATGACAACAGAAACAACATAGAACATGAGTCAAGTAGTAGCTTTATTTCAGTTGTACCTGGGCAAAATTATTCTTCTGTGGGCAATGATCAGCAAGAAAGTCAAACTGCTGCGCACACTACTTTCACTTTTTATTCTACTGATGGTGTGCCATACCTTCCATGTGATTCTATGCATCAGATACTGGTTGACCAGCACTCAGTTCCTTGTGAGGAGATGAATGCTTCACAGGATGCAAACAAGTTCGAGGAATTAAACGAACTGAGCCAAAAAAGGAAAAGGAGAAGAGGTGCAGAGATAAGTGAGGGCTGCAAACGCTGCAACTGTAAGAAGTCTAAATGTTTGAAACTTTATTGTGAGTGCTTTGCAGCTGGAGTATTTTGTTTGGATTCATGTGCATGTGAAAACTGCTACAACAAGCCTGAGTTTGAGGACACTGTTTTTGATGCACGTCAGCAAATTGAATCCCGTAATCCACTGGCATTTGCTCCCAGAGTTGTGAAGCATGAAATCAACTCTTCGCCTAATATTATGGAAGAAGCAGACTGGACGACCCCATCATCAGCTAGGCACAAGAGAGGTTGCAATTGCAAGAAGTCAAAGTGCCTGAAAAAATACTGTGAATGCTTCCAGGCTAATGTTGGATGTTCTGGCGCATGTAGATGTGATTGTTGCCAAAATCCGTGTGGCACTAAGGCAGACCATGAATACAACCGAGCTGAAAAGTGGGAAACCCACCCTGCTGAGAAGCTGGATACTATTAAGGGTGGGAATGATTGCATCAAGGCCTCGGATATGGATCAGTACTCTCCATGGGAAGGACTTTCTGTTATAAGCAATCTCACGCCGTTGTCAAATCCTTGCTCAAGTACAAGGGTTTCTTCAGCTTCATCAAGTATGAGAAACTGCACAAAAATTTCAGAAGCCCAATTACAATCAAGTAGGCTTCAGCCATCAGGTACTGGTCACTTGAAAAGGGGACGGTCACCTGTCATATTTACCCCACAAGTATTTGAAAGCAAGGGCCCCTCTCAGCTCAGTTCTGATGGTGCCAGTTATGAAAGAATGGATGATGATATACCTGAGTTACTGAAGGAACCTTCTATCCCCCCCAAGGTTGTCAAAGGTTCACCAAACCAGAAACGTGTGTCACCTCCACAATCCCAAGCTGAGAAGTTGCGGTCAAGGTCTCCTAAAGGCTTGAGAAGTGGCCGCAAATTCATTTTGCAGGCTATGCCTTCTTTCCCTCCTCTCTCCCCGTACAGCGATTCTAAAGCTATCAATGATACTAGGAATGACCATAAAGGTACCCAGAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

785

Amino Acids

85.87

Weight (kDa)

6.51

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCR	PF03638	449 - 484	3.4e-11	Tesmin/TSO1-like CXC domain, cysteine-rich domain
TCR	PF03638	536 - 571	3.9e-10	Tesmin/TSO1-like CXC domain, cysteine-rich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004241)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420
prunus_persica	Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136761
rosa_laevigata	RLG00000019570
rosa_multiflora	Rmu_co8313053.1_g000001 Rmu_sc0001299.1_g000020
rosa_roxburghii	Rroxscaffold_2G00108090
rosa_rugosa	Rorug02G0332900 Rorug02G0333000
rosa_samantha	Rh2AG383700 Rh2BG390400 Rh2CG370200 Rh2DG407000
rosa_wichuraiana	Rw2G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	264, 1865
Acc16I	TGCGCA	1 cut(s)	1146
Acc36I	ACCTGC	1 cut(s)	248
Acc65I	GGTACC	1 cut(s)	2339
AccB1I	GGYRCC	2 cut(s)	2081, 2339
AccB7I	CCANNNNNTGG	1 cut(s)	1027
AccBSI	CCGCTC	1 cut(s)	402
AccI	GTMKAC	2 cut(s)	372, 640
AccII	CGCG	1 cut(s)	219
AciI	CCGC	7 cut(s)	33, 36, 39, 402, 815, 2212, 2245
AclWI	GGATC	3 cut(s)	510, 867, 1839
AcoI	YGGCCR	1 cut(s)	2242
AcsI	RAATTY	2 cut(s)	1947, 2249
AcuI	CTGAAG	5 cut(s)	516, 790, 1899, 1964, 2144
AfaI	GTAC	9 cut(s)	379, 460, 1012, 1089, 1838, 1903, 1993, 2294, 2341
AfiI	CCNNNNNNNGG	4 cut(s)	367, 1027, 1850, 2146
AflIII	ACRYGT	1 cut(s)	2176
AgsI	TTSAA	8 cut(s)	254, 487, 533, 769, 1378, 1496, 2005, 2048
AhlI	ACTAGT	1 cut(s)	296
AjiI	CACGTC	1 cut(s)	1484
AjnI	CCWGG	2 cut(s)	1090, 1662
AleI	CACNNNNGTG	1 cut(s)	633
AloI	GAACNNNNNNTCC	2 cut(s)	2121, 2153
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	3 cut(s)	69, 656, 2226
AlwI	GGATC	3 cut(s)	510, 867, 1839
AlwNI	CAGNNNCTG	2 cut(s)	1216, 1994
Ama87I	CYCGRG	1 cut(s)	582
AoxI	GGCC	5 cut(s)	51, 853, 1818, 2056, 2242
ApaI	GGGCCC	1 cut(s)	2060
ApeKI	GCWGC	5 cut(s)	389, 1142, 1341, 1350, 1400
ApoI	RAATTY	2 cut(s)	1947, 2249
ArsI	GACNNNNNNTTYG	2 cut(s)	1457, 1489
Asp700I	GAANNNNTTC	1 cut(s)	895
Asp718I	GGTACC	1 cut(s)	2339
AspLEI	GCGC	4 cut(s)	219, 969, 1147, 1688
AspS9I	GGNCC	5 cut(s)	52, 313, 1018, 2056, 2057
AsuHPI	GGTGA	5 cut(s)	3, 571, 2010, 2154, 2175
AvaI	CYCGRG	1 cut(s)	582
AvaII	GGWCC	2 cut(s)	313, 1018
BaeGI	GKGCMC	1 cut(s)	2060
BanI	GGYRCC	2 cut(s)	2081, 2339
BanII	GRGCYC	1 cut(s)	2060
BarI	GAAGNNNNNNTAC	2 cut(s)	1947, 1979
BbsI	GAAGAC	3 cut(s)	557, 776, 840
Bbv12I	GWGCWC	1 cut(s)	589
BbvCI	CCTCAGC	1 cut(s)	904
BbvI	GCAGC	5 cut(s)	376, 1129, 1328, 1337, 1412
BccI	CCATC	6 cut(s)	446, 708, 1169, 1597, 1993, 2072
BceAI	ACGGC	1 cut(s)	1864
BcgI	CGANNNNNNTGC	2 cut(s)	693, 727
BciT130I	CCWGG	2 cut(s)	1092, 1664
BciVI	GTATCC	1 cut(s)	1780
BclI	TGATCA	1 cut(s)	1120
BcoDI	GTCTC	3 cut(s)	69, 656, 2226
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	4 cut(s)	297, 776, 1599, 2322
BfmI	CTRYAG	2 cut(s)	282, 666
BfuAI	ACCTGC	1 cut(s)	248
BfuI	GTATCC	1 cut(s)	1780
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	9 cut(s)	33, 36, 39, 390, 1143, 1342, 1351, 1401, 2245
BlsI	GCNGC	9 cut(s)	34, 37, 40, 391, 1144, 1343, 1352, 1402, 2246
BmcAI	AGTACT	1 cut(s)	1838
Bme1390I	CCNGG	2 cut(s)	1092, 1664
Bme18I	GGWCC	2 cut(s)	313, 1018
BmeT110I	CYCGRG	1 cut(s)	582
BmgBI	CACGTC	1 cut(s)	1484
BmgT120I	GGNCC	5 cut(s)	52, 313, 1018, 2056, 2057
BmiI	GGNNCC	6 cut(s)	163, 2058, 2059, 2083, 2130, 2341
BmrFI	CCNGG	2 cut(s)	1092, 1664
BmsI	GCATC	6 cut(s)	338, 658, 1216, 1255, 1468, 1821
BpiI	GAAGAC	3 cut(s)	557, 776, 840
BpmI	CTGGAG	2 cut(s)	233, 1425
Bpu10I	CCTNAGC	3 cut(s)	101, 612, 904
BpuEI	CTTGAG	2 cut(s)	1882, 2254
Bsa29I	ATCGAT	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	644
BsaBI	GATNNNNATC	2 cut(s)	958, 1830
BsaI	GGTCTC	1 cut(s)	2226
BsaJI	CCNNGG	6 cut(s)	595, 634, 1091, 1821, 1844, 2145
BsaWI	WCCGGW	2 cut(s)	13, 1015
BsaXI	ACNNNNNCTCC	6 cut(s)	302, 332, 892, 922, 1306, 1336
Bsc4I	CCNNNNNNNGG	4 cut(s)	367, 1027, 1850, 2146
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	9 cut(s)	182, 225, 316, 1003, 1221, 1515, 1583, 1999, 2085
Bse3DI	GCAATG	1 cut(s)	1123
Bse8I	GATNNNNATC	2 cut(s)	958, 1830
BseBI	CCWGG	2 cut(s)	1092, 1664
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	6 cut(s)	595, 634, 1091, 1821, 1844, 2145
BseGI	GGATG	4 cut(s)	959, 1270, 1682, 2107
BseJI	GATNNNNATC	2 cut(s)	958, 1830
BseLI	CCNNNNNNNGG	4 cut(s)	367, 1027, 1850, 2146
BseMI	GCAATG	1 cut(s)	1123
BseNI	ACTGG	9 cut(s)	182, 225, 316, 1003, 1221, 1515, 1583, 1999, 2085
BseRI	GAGGAG	2 cut(s)	1259, 2271
BseSI	GKGCMC	1 cut(s)	2060
BseXI	GCAGC	5 cut(s)	376, 1129, 1328, 1337, 1412
BsgI	GTGCAG	3 cut(s)	343, 1344, 1924
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	5 cut(s)	53, 855, 1820, 2058, 2244
BshNI	GGYRCC	2 cut(s)	2081, 2339
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	589
BsiHKCI	CYCGRG	1 cut(s)	582
BsiSI	CCGG	4 cut(s)	14, 50, 852, 1016
BslFI	GGGAC	1 cut(s)	2025
BslI	CCNNNNNNNGG	4 cut(s)	367, 1027, 1850, 2146
BsmAI	GTCTC	3 cut(s)	69, 656, 2226
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	2025
BsmI	GAATGC	2 cut(s)	1258, 1661
BsnI	GGCC	5 cut(s)	53, 855, 1820, 2058, 2244
Bso31I	GGTCTC	1 cut(s)	2226
BsoBI	CYCGRG	1 cut(s)	582
Bsp120I	GGGCCC	1 cut(s)	2056
Bsp1286I	GDGCHC	2 cut(s)	589, 2060
Bsp1407I	TGTACA	1 cut(s)	377
Bsp143I	GATC	7 cut(s)	208, 502, 571, 872, 953, 1120, 1831
Bsp19I	CCATGG	2 cut(s)	595, 1844
BspACI	CCGC	7 cut(s)	33, 36, 39, 402, 815, 2212, 2245
BspANI	GGCC	5 cut(s)	53, 855, 1820, 2058, 2244
BspDI	ATCGAT	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	6 cut(s)	163, 2058, 2059, 2083, 2130, 2341
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	3 cut(s)	510, 867, 1839
BspT107I	GGYRCC	2 cut(s)	2081, 2339
BspTNI	GGTCTC	1 cut(s)	2226
BsrBI	CCGCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	1123
BsrFI	RCCGGY	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	377
BsrI	ACTGG	9 cut(s)	182, 225, 316, 1003, 1221, 1515, 1583, 1999, 2085
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	6 cut(s)	595, 634, 1091, 1821, 1844, 2145
BssMI	GATC	7 cut(s)	208, 502, 571, 872, 953, 1120, 1831
BssNAI	GTATAC	1 cut(s)	641
BssT1I	CCWWGG	3 cut(s)	595, 1844, 2145
Bst1107I	GTATAC	1 cut(s)	641
Bst2UI	CCWGG	2 cut(s)	1092, 1664
Bst4CI	ACNGT	7 cut(s)	127, 377, 635, 1358, 1471, 1652, 2016
Bst6I	CTCTTC	5 cut(s)	125, 674, 901, 1312, 1555
BstAPI	GCANNNNNTGC	2 cut(s)	1350, 2266
BstAUI	TGTACA	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	644
BstC8I	GCNNGC	3 cut(s)	51, 415, 2262
BstDSI	CCRYGG	3 cut(s)	595, 634, 1844
BstEII	GGTNACC	3 cut(s)	9, 695, 2016
BstF5I	GGATG	4 cut(s)	959, 1270, 1682, 2107
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	4 cut(s)	219, 969, 1147, 1688
BstKTI	GATC	7 cut(s)	211, 505, 574, 875, 956, 1123, 1834
BstMAI	GTCTC	3 cut(s)	69, 656, 2226
BstMBI	GATC	7 cut(s)	208, 502, 571, 872, 953, 1120, 1831
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 82, 362, 1347, 1350, 2266
BstNI	CCWGG	2 cut(s)	1092, 1664
BstNSI	RCATGY	2 cut(s)	1434, 1692
BstPI	GGTNACC	3 cut(s)	9, 695, 2016
BstSCI	CCNGG	2 cut(s)	1090, 1662
BstSFI	CTRYAG	2 cut(s)	282, 666
BstSLI	GKGCMC	1 cut(s)	2060
BstSNI	TACGTA	1 cut(s)	644
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	5 cut(s)	376, 1129, 1328, 1337, 1412
BstV2I	GAAGAC	3 cut(s)	557, 776, 840
BstX2I	RGATCY	3 cut(s)	502, 571, 872
BstXI	CCANNNNNNTGG	2 cut(s)	232, 887
BstYI	RGATCY	3 cut(s)	502, 571, 872
BstZ17I	GTATAC	1 cut(s)	641
Bsu15I	ATCGAT	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	1780
BsuRI	GGCC	5 cut(s)	53, 855, 1820, 2058, 2244
BsuTUI	ATCGAT	1 cut(s)	342
BtgI	CCRYGG	3 cut(s)	595, 634, 1844
BtgZI	GCGATG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	1484
BtsCI	GGATG	4 cut(s)	959, 1270, 1682, 2107
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	5 cut(s)	132, 331, 518, 1467, 1508
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	3 cut(s)	51, 415, 2262
CaiI	CAGNNNCTG	2 cut(s)	1216, 1994
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	4 cut(s)	219, 969, 1147, 1688
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	5 cut(s)	52, 313, 1018, 2056, 2057
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	730
Csp6I	GTAC	9 cut(s)	378, 459, 1011, 1088, 1837, 1902, 1992, 2293, 2340
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviQI	GTAC	9 cut(s)	378, 459, 1011, 1088, 1837, 1902, 1992, 2293, 2340
DpnI	GATC	7 cut(s)	210, 504, 573, 874, 955, 1122, 1833
DpnII	GATC	7 cut(s)	208, 502, 571, 872, 953, 1120, 1831
EaeI	YGGCCR	1 cut(s)	2242
Eam1104I	CTCTTC	5 cut(s)	125, 674, 901, 1312, 1555
EarI	CTCTTC	5 cut(s)	125, 674, 901, 1312, 1555
Eco105I	TACGTA	1 cut(s)	644
Eco130I	CCWWGG	3 cut(s)	595, 1844, 2145
Eco147I	AGGCCT	1 cut(s)	1820
Eco24I	GRGCYC	1 cut(s)	2060
Eco31I	GGTCTC	1 cut(s)	2226
Eco47I	GGWCC	2 cut(s)	313, 1018
Eco57I	CTGAAG	5 cut(s)	516, 790, 1899, 1964, 2144
Eco88I	CYCGRG	1 cut(s)	582
Eco91I	GGTNACC	3 cut(s)	9, 695, 2016
EcoO109I	RGGNCCY	2 cut(s)	2056, 2057
EcoO65I	GGTNACC	3 cut(s)	9, 695, 2016
EcoRII	CCWGG	2 cut(s)	1090, 1662
EcoT14I	CCWWGG	3 cut(s)	595, 1844, 2145
EcoT22I	ATGCAT	1 cut(s)	1209
EcoT38I	GRGCYC	1 cut(s)	2060
ErhI	CCWWGG	3 cut(s)	595, 1844, 2145
Esp3I	CGTCTC	1 cut(s)	69
FalI	AAGNNNNNCTT	2 cut(s)	1897, 1929
FaqI	GGGAC	1 cut(s)	2025
FbaI	TGATCA	1 cut(s)	1120
FblI	GTMKAC	2 cut(s)	372, 640
Fnu4HI	GCNGC	9 cut(s)	33, 36, 39, 390, 1143, 1342, 1351, 1401, 2245
FokI	GGATG	4 cut(s)	946, 1277, 1689, 2114
FriOI	GRGCYC	1 cut(s)	2060
Fsp4HI	GCNGC	9 cut(s)	33, 36, 39, 390, 1143, 1342, 1351, 1401, 2245
FspBI	CTAG	4 cut(s)	297, 776, 1599, 2322
FspI	TGCGCA	1 cut(s)	1146
GlaI	GCGC	4 cut(s)	218, 968, 1146, 1687
GluI	GCNGC	9 cut(s)	33, 36, 39, 390, 1143, 1342, 1351, 1401, 2245
GsuI	CTGGAG	2 cut(s)	233, 1425
HaeIII	GGCC	5 cut(s)	53, 855, 1820, 2058, 2244
HapII	CCGG	4 cut(s)	14, 50, 852, 1016
HgaI	GACGC	1 cut(s)	730
HhaI	GCGC	4 cut(s)	219, 969, 1147, 1688
Hin6I	GCGC	4 cut(s)	217, 967, 1145, 1686
HinP1I	GCGC	4 cut(s)	217, 967, 1145, 1686
HincII	GTYRAC	2 cut(s)	626, 1222
HindII	GTYRAC	2 cut(s)	626, 1222
HpaII	CCGG	4 cut(s)	14, 50, 852, 1016
HphI	GGTGA	5 cut(s)	3, 571, 2010, 2154, 2175
Hpy166II	GTNNAC	8 cut(s)	373, 470, 626, 641, 932, 1013, 1222, 2162
Hpy188I	TCNGA	8 cut(s)	720, 748, 939, 973, 1212, 1825, 1954, 2077
Hpy188III	TCNNGA	3 cut(s)	212, 289, 440
Hpy8I	GTNNAC	8 cut(s)	373, 470, 626, 641, 932, 1013, 1222, 2162
HpyAV	CCTTC	9 cut(s)	175, 301, 525, 814, 1199, 1844, 2119, 2142, 2280
HpyCH4III	ACNGT	7 cut(s)	127, 377, 635, 1358, 1471, 1652, 2016
HpyCH4IV	ACGT	3 cut(s)	643, 1483, 2176
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 82, 362, 1347, 1350, 2266
HpySE526I	ACGT	3 cut(s)	643, 1483, 2176
HspAI	GCGC	4 cut(s)	217, 967, 1145, 1686
KpnI	GGTACC	1 cut(s)	2343
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	1120
Kzo9I	GATC	7 cut(s)	208, 502, 571, 872, 953, 1120, 1831
LmnI	GCTCC	5 cut(s)	161, 214, 913, 1030, 1525
Lsp1109I	GCAGC	5 cut(s)	376, 1129, 1328, 1337, 1412
LweI	GCATC	6 cut(s)	338, 658, 1216, 1255, 1468, 1821
MaeI	CTAG	4 cut(s)	297, 776, 1599, 2322
MaeII	ACGT	3 cut(s)	643, 1483, 2176
MaeIII	GTNAC	8 cut(s)	9, 577, 695, 830, 1997, 2016, 2118, 2181
MalI	GATC	7 cut(s)	210, 504, 573, 874, 955, 1122, 1833
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	7 cut(s)	208, 502, 571, 872, 953, 1120, 1831
MfeI	CAATTG	2 cut(s)	842, 1618
MflI	RGATCY	3 cut(s)	502, 571, 872
MhlI	GDGCHC	2 cut(s)	589, 2060
MlyI	GAGTC	4 cut(s)	89, 766, 872, 1070
MmeI	TCCRAC	2 cut(s)	1008, 1654
Mph1103I	ATGCAT	1 cut(s)	1209
MroNI	GCCGGC	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	895
MseI	TTAA	3 cut(s)	740, 1286, 1794
MslI	CAYNNNNRTG	4 cut(s)	334, 633, 1429, 1693
MspA1I	CMGCKG	1 cut(s)	1403
MspI	CCGG	4 cut(s)	14, 50, 852, 1016
MspR9I	CCNGG	2 cut(s)	1092, 1664
MunI	CAATTG	2 cut(s)	842, 1618
Mva1269I	GAATGC	2 cut(s)	1258, 1661
MvaI	CCWGG	2 cut(s)	1092, 1664
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	6 cut(s)	38, 82, 362, 1347, 1350, 2266
NaeI	GCCGGC	1 cut(s)	51
NcoI	CCATGG	2 cut(s)	595, 1844
NdeII	GATC	7 cut(s)	208, 502, 571, 872, 953, 1120, 1831
NgoMIV	GCCGGC	1 cut(s)	49
NlaIV	GGNNCC	6 cut(s)	163, 2058, 2059, 2083, 2130, 2341
NmuCI	GTSAC	6 cut(s)	9, 577, 830, 1997, 2016, 2181
NsbI	TGCGCA	1 cut(s)	1146
NsiI	ATGCAT	1 cut(s)	1209
NspI	RCATGY	2 cut(s)	1434, 1692
OliI	CACNNNNGTG	1 cut(s)	633
PagI	TCATGA	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	1820
PctI	GAATGC	2 cut(s)	1258, 1661
PdiI	GCCGGC	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	895
PfeI	GAWTC	8 cut(s)	22, 422, 487, 749, 1199, 1421, 1496, 2300
PflMI	CCANNNNNTGG	1 cut(s)	1027
PkrI	GCNGC	9 cut(s)	34, 37, 40, 391, 1144, 1343, 1352, 1402, 2246
PleI	GAGTC	4 cut(s)	88, 766, 871, 1069
PpsI	GAGTC	4 cut(s)	88, 766, 871, 1069
Ppu21I	YACGTR	1 cut(s)	644
PsiI	TTATAA	2 cut(s)	264, 1865
Psp6I	CCWGG	2 cut(s)	1090, 1662
PspEI	GGTNACC	3 cut(s)	9, 695, 2016
PspGI	CCWGG	2 cut(s)	1090, 1662
PspN4I	GGNNCC	6 cut(s)	163, 2058, 2059, 2083, 2130, 2341
PspOMI	GGGCCC	1 cut(s)	2056
PspPI	GGNCC	5 cut(s)	52, 313, 1018, 2056, 2057
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	2 cut(s)	1216, 1994
PsuI	RGATCY	3 cut(s)	502, 571, 872
PvuII	CAGCTG	1 cut(s)	1403
RsaI	GTAC	9 cut(s)	379, 460, 1012, 1089, 1838, 1903, 1993, 2294, 2341
RsaNI	GTAC	9 cut(s)	378, 459, 1011, 1088, 1837, 1902, 1992, 2293, 2340
RseI	CAYNNNNRTG	4 cut(s)	334, 633, 1429, 1693
SaqAI	TTAA	3 cut(s)	740, 1286, 1794
SatI	GCNGC	9 cut(s)	33, 36, 39, 390, 1143, 1342, 1351, 1401, 2245
Sau3AI	GATC	7 cut(s)	208, 502, 571, 872, 953, 1120, 1831
Sau96I	GGNCC	5 cut(s)	52, 313, 1018, 2056, 2057
ScaI	AGTACT	1 cut(s)	1838
SchI	GAGTC	4 cut(s)	89, 766, 872, 1070
ScrFI	CCNGG	2 cut(s)	1092, 1664
SduI	GDGCHC	2 cut(s)	589, 2060
SfaNI	GCATC	6 cut(s)	338, 658, 1216, 1255, 1468, 1821
SfcI	CTRYAG	2 cut(s)	282, 666
SinI	GGWCC	2 cut(s)	313, 1018
SmiMI	CAYNNNNRTG	4 cut(s)	334, 633, 1429, 1693
SmlI	CTYRAG	2 cut(s)	1897, 2233
SmoI	CTYRAG	2 cut(s)	1897, 2233
SnaBI	TACGTA	1 cut(s)	644
SpeI	ACTAGT	1 cut(s)	296
SseBI	AGGCCT	1 cut(s)	1820
SsiI	CCGC	7 cut(s)	33, 36, 39, 402, 815, 2212, 2245
SspI	AATATT	2 cut(s)	350, 1561
SspMI	CTAG	4 cut(s)	297, 776, 1599, 2322
StuI	AGGCCT	1 cut(s)	1820
StyD4I	CCNGG	2 cut(s)	1090, 1662
StyI	CCWWGG	3 cut(s)	595, 1844, 2145
TaaI	ACNGT	7 cut(s)	127, 377, 635, 1358, 1471, 1652, 2016
TaiI	ACGT	3 cut(s)	646, 1486, 2179
TaqI	TCGA	4 cut(s)	342, 703, 952, 1278
TatI	WGTACW	5 cut(s)	377, 458, 1010, 1836, 1901
TauI	GCSGC	4 cut(s)	35, 38, 41, 2247
TfiI	GAWTC	8 cut(s)	22, 422, 487, 749, 1199, 1421, 1496, 2300
Tru1I	TTAA	3 cut(s)	740, 1286, 1794
Tru9I	TTAA	3 cut(s)	740, 1286, 1794
TscAI	CASTG	5 cut(s)	132, 331, 525, 1474, 1515
TseFI	GTSAC	6 cut(s)	9, 577, 830, 1997, 2016, 2181
TseI	GCWGC	5 cut(s)	389, 1142, 1341, 1350, 1400
Tsp45I	GTSAC	6 cut(s)	9, 577, 830, 1997, 2016, 2181
TspDTI	ATGAA	9 cut(s)	360, 428, 1265, 1413, 1554, 1752, 1911, 2106, 2242
TspGWI	ACGGA	2 cut(s)	57, 1704
TspRI	CASTG	5 cut(s)	132, 331, 525, 1474, 1515
Van91I	CCANNNNNTGG	1 cut(s)	1027
VpaK11BI	GGWCC	2 cut(s)	313, 1018
XapI	RAATTY	2 cut(s)	1947, 2249
XceI	RCATGY	2 cut(s)	1434, 1692
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1670, 1715
XmiI	GTMKAC	2 cut(s)	372, 640
XmnI	GAANNNNTTC	1 cut(s)	895
XspI	CTAG	4 cut(s)	297, 776, 1599, 2322
ZrmI	AGTACT	1 cut(s)	1838
Zsp2I	ATGCAT	1 cut(s)	1209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.