Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014825

Physical Location & Seq

Genomic Coordinates Reverse (-)

6193774 .. 6194338

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G083800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTTAAAGTAAAGGGACTTTGCAAATTCAATGGCAAAGCGTATGATCTCTTATGTGGACTCAGCATGAGAAGCTCTTATGGACCCAGAGCTGAGATTCTGAGAAGAGGGAAAACACCCCTGTATATAAGGCTATGCCTTGCTGGAGCTGCATCACTGCATGACCAGTCAAAAGAGTGTTGTTTTCTCAGGCACCAGTTAGCACAGACAAAATTGGCATGCCTGACCGAGCTTCACACCAAAGCTCCTGAACATAGCTTTGCCTACACCAAGAAAACTATTGAACCAGCGTTTGGCCGCAAGCTCCTTGAGATTTTTGATAATTTTGAAGAAAAACCAGTAGCATCTGGAAGTATTGCTAGTGCATCGATCGAGAGCTACTTTAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

ABC1

Protein Analysis

131

Amino Acids

14.55

Weight (kDa)

9.3

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014825)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.2G191600_v2.0.a1 Prupe.3G083800_v2.0.a1 Prupe.3G301800_v2.0.a1 Prupe.3G301800_v2.0.a1 Prupe.6G059900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0005911
rosa_laevigata	RLG00000031350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	192
AccB7I	CCANNNNNTGG	1 cut(s)	293
AciI	CCGC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	31, 284, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	8 cut(s)	75, 92, 149, 232, 245, 258, 304, 378
AluI	AGCT	8 cut(s)	75, 92, 149, 232, 245, 258, 304, 378
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	136
BfaI	CTAG	1 cut(s)	360
BisI	GCNGC	2 cut(s)	150, 298
BlsI	GCNGC	2 cut(s)	151, 299
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	85, 194
BmsI	GCATC	3 cut(s)	161, 353, 374
BpmI	CTGGAG	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	329
Bsa29I	ATCGAT	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	3 cut(s)	166, 196, 338
BseCI	ATCGAT	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	4 cut(s)	76, 84, 92, 202
BseNI	ACTGG	3 cut(s)	166, 196, 338
BseXI	GCAGC	1 cut(s)	136
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	297
BshNI	GGYRCC	1 cut(s)	192
BshVI	ATCGAT	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	46, 369
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	4 cut(s)	75, 85, 93, 201
BspDI	ATCGAT	1 cut(s)	368
BspLI	GGNNCC	2 cut(s)	85, 194
BspT107I	GGYRCC	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	166, 196, 338
BssMI	GATC	2 cut(s)	46, 369
Bst6I	CTCTTC	1 cut(s)	100
BstC8I	GCNNGC	2 cut(s)	220, 302
BstDEI	CTNAG	4 cut(s)	62, 93, 101, 188
BstKTI	GATC	2 cut(s)	49, 372
BstMBI	GATC	2 cut(s)	46, 369
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 149
BstNSI	RCATGY	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	2 cut(s)	220, 302
Cfr13I	GGNCC	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	368
CviAII	CATG	3 cut(s)	67, 161, 219
DdeI	CTNAG	4 cut(s)	62, 93, 101, 188
DpnI	GATC	2 cut(s)	48, 371
DpnII	GATC	2 cut(s)	46, 369
DraI	TTTAAA	1 cut(s)	7
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	83
FaeI	CATG	3 cut(s)	70, 164, 222
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	3 cut(s)	66, 160, 218
Fnu4HI	GCNGC	2 cut(s)	150, 298
Fsp4HI	GCNGC	2 cut(s)	150, 298
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	2 cut(s)	150, 298
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	70, 164, 222
HinfI	GANTC	2 cut(s)	60, 97
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	3 cut(s)	248, 348, 373
Hpy8I	GTNNAC	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	24, 152, 160, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 149
HpyF3I	CTNAG	4 cut(s)	62, 93, 101, 188
Hsp92II	CATG	3 cut(s)	70, 164, 222
Kzo9I	GATC	2 cut(s)	46, 369
LmnI	GCTCC	3 cut(s)	146, 250, 309
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	3 cut(s)	161, 353, 374
MaeI	CTAG	1 cut(s)	360
MalI	GATC	2 cut(s)	48, 371
MboI	GATC	2 cut(s)	46, 369
MboII	GAAGA	2 cut(s)	117, 341
MluCI	AATT	3 cut(s)	26, 212, 322
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	1 cut(s)	101
MseI	TTAA	2 cut(s)	6, 384
MwoI	GCNNNNNNNGC	2 cut(s)	72, 149
NdeII	GATC	2 cut(s)	46, 369
NlaIII	CATG	3 cut(s)	70, 164, 222
NlaIV	GGNNCC	2 cut(s)	85, 194
NspI	RCATGY	1 cut(s)	222
PaeI	GCATGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	151, 299
Ple19I	CGATCG	1 cut(s)	372
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	85, 194
PspPI	GGNCC	1 cut(s)	83
PvuI	CGATCG	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	6, 384
SatI	GCNGC	2 cut(s)	150, 298
Sau3AI	GATC	2 cut(s)	46, 369
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	1 cut(s)	54
SetI	ASST	8 cut(s)	77, 94, 151, 234, 247, 260, 306, 380
SfaNI	GCATC	3 cut(s)	161, 353, 374
SinI	GGWCC	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	3 cut(s)	26, 212, 322
SsiI	CCGC	1 cut(s)	298
SspMI	CTAG	1 cut(s)	360
TaqI	TCGA	2 cut(s)	368, 372
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	26, 212, 322
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	2 cut(s)	6, 384
Tru9I	TTAA	2 cut(s)	6, 384
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	1 cut(s)	149
TspRI	CASTG	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.