Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014825

Physical Location & Seq

Genomic Coordinates Reverse (-)

4301532 .. 4302171

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTTCTTACAGGAAGTGGAGGAGTCATTCACTTTCTGGGGTACTCCAGAAGGTGATCTGGTTCATCCTGCTGATTGCATGCAGCAGTTACTGGAGAAAGTTAGGCGGCATAGAGTCAATGTTGATGGCAATGTTTGTACTGTCATGGTGACAACATTGGTTCTTGAGGTAATCTTTTCTTTATCTTCAGAAGCCAAGGCATTCTCTCATGCAGTGGAAACTATATTTAGATTTTCACTTGCATATACTGCAAAGCTTCCAGAATGCCCTTGTATTGCAAAACCCAACACTGATAGATTTCAAAAACTTCGAAGTAGAGGAACACTCATGAAAAAACAAATAATAGGGGTTCGCAGCCAACTGGTTGAATTTAATGAAATGGCATGGACAAGGCAGAGGAAACTTGATCCGGCATACAATGTGATGCATACCTTGCAAACTCTGCTTCTCAAGGCTGACTGGGCAAAGTCCCTATCATACACAATTGAGGGGCTAATGGCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

169

Amino Acids

19.23

Weight (kDa)

8.37

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014825)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.1G083800_v2.0.a1 Prupe.2G191600_v2.0.a1 Prupe.3G083800_v2.0.a1 Prupe.3G301800_v2.0.a1 Prupe.3G301800_v2.0.a1 Prupe.6G059900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0005911
rosa_laevigata	RLG00000031350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	2 cut(s)	43, 139
AgsI	TTSAA	2 cut(s)	302, 368
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
AlwI	GGATC	1 cut(s)	401
AlwNI	CAGNNNCTG	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	82, 354
ApoI	RAATTY	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	65, 160
AsuII	TTCGAA	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	94, 366
BccI	CCATC	1 cut(s)	119
BisI	GCNGC	3 cut(s)	83, 107, 355
BlsI	GCNGC	3 cut(s)	84, 108, 356
BmiI	GGNNCC	1 cut(s)	501
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	414
BmuI	ACTGGG	1 cut(s)	469
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BpmI	CTGGAG	2 cut(s)	30, 113
Bpu14I	TTCGAA	1 cut(s)	310
BpuEI	CTTGAG	2 cut(s)	185, 434
BsaJI	CCNNGG	1 cut(s)	195
Bse1I	ACTGG	3 cut(s)	96, 366, 464
Bse3DI	GCAATG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	136
BseNI	ACTGG	3 cut(s)	96, 366, 464
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	94, 366
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	2 cut(s)	200, 269
Bsp119I	TTCGAA	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	55, 406
BspACI	CCGC	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	501
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	3 cut(s)	96, 366, 464
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	55, 406
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	142
BstAPI	GCANNNNNTGC	3 cut(s)	248, 433, 442
BstBI	TTCGAA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	2 cut(s)	58, 409
BstMBI	GATC	2 cut(s)	55, 406
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 433, 442, 461
BstNSI	RCATGY	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	94, 366
BtsCI	GGATG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	219, 288
Cac8I	GCNNGC	1 cut(s)	80
CaiI	CAGNNNCTG	1 cut(s)	91
CciI	TCATGA	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	42, 138
CviAII	CATG	5 cut(s)	79, 145, 209, 328, 384
CviJI	RGCY	6 cut(s)	194, 256, 357, 455, 493, 500
CviKI_1	RGCY	6 cut(s)	194, 256, 357, 455, 493, 500
CviQI	GTAC	2 cut(s)	42, 138
DpnI	GATC	2 cut(s)	57, 408
DpnII	GATC	2 cut(s)	55, 406
Eco130I	CCWWGG	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	5 cut(s)	82, 148, 212, 331, 387
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	5 cut(s)	78, 144, 208, 327, 383
Fnu4HI	GCNGC	3 cut(s)	83, 107, 355
FokI	GGATG	1 cut(s)	51
Fsp4HI	GCNGC	3 cut(s)	83, 107, 355
GluI	GCNGC	3 cut(s)	83, 107, 355
GsuI	CTGGAG	2 cut(s)	30, 113
HapII	CCGG	1 cut(s)	410
Hin1II	CATG	5 cut(s)	82, 148, 212, 331, 387
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	23, 114
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	2 cut(s)	65, 160
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	4 cut(s)	47, 164, 260, 328
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	8 cut(s)	78, 82, 212, 242, 251, 278, 427, 436
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 433, 442, 461
Hsp92II	CATG	5 cut(s)	82, 148, 212, 331, 387
Kzo9I	GATC	2 cut(s)	55, 406
LmnI	GCTCC	1 cut(s)	505
LpnPI	CCDG	9 cut(s)	22, 44, 60, 77, 81, 273, 347, 423, 445
Lsp1109I	GCAGC	2 cut(s)	94, 366
LweI	GCATC	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	87, 148
MalI	GATC	2 cut(s)	57, 408
MboI	GATC	2 cut(s)	55, 406
MboII	GAAGA	1 cut(s)	177
MfeI	CAATTG	1 cut(s)	483
MluCI	AATT	2 cut(s)	368, 483
MlyI	GAGTC	2 cut(s)	32, 123
MnlI	CCTC	5 cut(s)	13, 160, 311, 390, 481
Mph1103I	ATGCAT	1 cut(s)	429
MseI	TTAA	2 cut(s)	372, 505
MspI	CCGG	1 cut(s)	410
MunI	CAATTG	1 cut(s)	483
Mva1269I	GAATGC	2 cut(s)	200, 269
MwoI	GCNNNNNNNGC	4 cut(s)	248, 433, 442, 461
NdeII	GATC	2 cut(s)	55, 406
NlaIII	CATG	5 cut(s)	82, 148, 212, 331, 387
NlaIV	GGNNCC	1 cut(s)	501
NmuCI	GTSAC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	310
PaeI	GCATGC	1 cut(s)	82
PagI	TCATGA	1 cut(s)	327
PctI	GAATGC	2 cut(s)	200, 269
PkrI	GCNGC	3 cut(s)	84, 108, 356
PleI	GAGTC	2 cut(s)	31, 122
PpsI	GAGTC	2 cut(s)	31, 122
PspN4I	GGNNCC	1 cut(s)	501
PstNI	CAGNNNCTG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	43, 139
RsaNI	GTAC	2 cut(s)	42, 138
SaqAI	TTAA	2 cut(s)	372, 505
SatI	GCNGC	3 cut(s)	83, 107, 355
Sau3AI	GATC	2 cut(s)	55, 406
SchI	GAGTC	2 cut(s)	32, 123
SetI	ASST	4 cut(s)	55, 171, 258, 434
SfaNI	GCATC	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	310
SmlI	CTYRAG	2 cut(s)	164, 449
SmoI	CTYRAG	2 cut(s)	164, 449
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	2 cut(s)	368, 483
SsiI	CCGC	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	310
TasI	AATT	2 cut(s)	368, 483
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	109
Tru1I	TTAA	2 cut(s)	372, 505
Tru9I	TTAA	2 cut(s)	372, 505
TscAI	CASTG	2 cut(s)	219, 295
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	82, 354
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	53, 344, 390
TspRI	CASTG	2 cut(s)	219, 295
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.