Prupe.3G174100_v2.0.a1

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016898
Physical Location & Seq
Forward (+)
19133324 .. 19135308
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G174100.1

Sequence Viewer

Length: 1218 bp
ATGGATGAATCTTTTCTTCCCAAGATTGAAACAAGACTTGGCGTTGGCGGCGAAGATCAGCAAGAGCCTAGCAGAGGCAGAACACCAAGAAGCTCCTTCCCCTCCTCAGCATACCTTGATGTTGGTCCATCCAGGCGTCTCTCAACTGCTCAGCTCCTCACAGGCGGTGATGTTATTGTTCCCATTATCACAACACCAAACTCTTCTTCTTATGCCAATCTCATTGTCAACTTGAACAAGAACAAGAAGAGGAAGCTCCAACACCGGTCACACTCGGCGCCATCGGTGTTTACTGACGCCCGGGTGCCAATTCGAGACTCTGTGGATCCTAGGCCGTCCCCTAAATCAACCCCTTTAATTGTCCGCCAAGCCTTCATCGGTGTCATTGTGTATGTCATAATTGGCATTGTCATATTCTGTACAACCAGTGCAAATTTCAAGGGCCAAGGAACCTACAAGCCTGTGGACGCTCTGTACTTCATTGTGGTCACGCTCTGCACCATTGGATATGGCGACATTGTTCCGGAAACCACGCTTACCAAGCTCTTCACCTGTTTCTTCATCTTGGTCGGTTTCGGGTTCATTGATATCCTGCTCAACGGGTTGGTGGCGTACATCTGTGACAGGCAAGAAGCAGTCTTGTTGAGCACCATGGATGAGACTAAGTTCAACAACATGATTCAGACGTATATGATCGATAGAGAGAAAGGAAGAATGAGAATAAGAATCAAGGTGGGGTTGGCATTGTCAGTTGTTATTGGTTGTATAGCTATAGGGACAATTACAGTGCATTTTTTGGAGGACATGAGCTGGATTAATAGCTTCTACCTCTCTGTTACATCAGTCACAACTGTGGGTTATGGGGATTTGGCTTTCAAGACAGTCGGAGGAAGGTGTTTTGCAATTGTGTGGTTATTGGTAAGCACATTGGCTGTTGCCAGGGCTTTTCTGTACTTGACTGAGCTTAGAATCGACAAGAGGAATCGCCGAATTGCGAAATGGGTTCTTCAGAAGGAAGTTACGATGAGGGATTTATTAGCAGCAGACCTTAATAATGATGGATGCATCAGCAAATCAGAGTTTGTCATATACAAGCTTAAGGAGATGGGAAGGGTTACGGAGAATGACATCCTGCAAATTTGCAAGCAATTTGATTCTTTGGAACATAGTAATTATGACAAAATTACTCTTGTTGACCTAATGGAAGGTAACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

406

Amino Acids

45.26

Weight (kDa)

8.99

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016898)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g38350
malus_domestica MD09G1150900.v1.1
prunus_persica Prupe.3G174100_v2.0.a1
pyrus_communis pycom09g07070 pycom17g13150
rosa_chinensis RchiOBHm_Chr2g0151661
rosa_multiflora Rmu_sc0005294.1_g000051
rosa_roxburghii Rroxscaffold_2G00096280
rosa_rugosa Rorug02G0427600
rosa_samantha Rh2AG488500 Rh2BG501200 Rh2CG475000 Rh2DG512300
rosa_wichuraiana Rw2G040060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 277, 304
AccIII TCCGGA 1 cut(s) 523
AciI CCGC 3 cut(s) 48, 165, 364
AclWI GGATC 2 cut(s) 320, 333
AcsI RAATTY 2 cut(s) 433, 1137
AcuI CTGAAG 1 cut(s) 992
AcyI GRCGYC 3 cut(s) 136, 278, 297
AfaI GTAC 4 cut(s) 421, 476, 614, 953
AfiI CCNNNNNNNGG 1 cut(s) 74
AflII CTTAAG 1 cut(s) 1097
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 5 cut(s) 29, 235, 439, 670, 877
AjnI CCWGG 2 cut(s) 131, 938
AjuI GAANNNNNNNTTGG 4 cut(s) 21, 53, 190, 222
AleI CACNNNNGTG 1 cut(s) 851
AluBI AGCT 9 cut(s) 93, 154, 256, 544, 770, 810, 822, 964, 1096
AluI AGCT 9 cut(s) 93, 154, 256, 544, 770, 810, 822, 964, 1096
Alw21I GWGCWC 1 cut(s) 650
Alw26I GTCTC 3 cut(s) 143, 309, 653
AlwI GGATC 2 cut(s) 320, 333
Ama87I CYCGRG 1 cut(s) 300
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 2 cut(s) 332, 442
ApeKI GCWGC 1 cut(s) 1040
ApoI RAATTY 2 cut(s) 433, 1137
AseI ATTAAT 1 cut(s) 816
AsiGI ACCGGT 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 12
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 125, 442
AsuC2I CCSGG 2 cut(s) 301, 302
AsuHPI GGTGA 2 cut(s) 179, 541
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 1 cut(s) 125
AvrII CCTAGG 1 cut(s) 329
BamHI GGATCC 1 cut(s) 325
BanI GGYRCC 2 cut(s) 277, 304
Bbv12I GWGCWC 1 cut(s) 650
BbvCI CCTCAGC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 1052
BccI CCATC 4 cut(s) 136, 289, 1052, 1099
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 2 cut(s) 133, 940
BcnI CCSGG 2 cut(s) 301, 302
BcoDI GTCTC 3 cut(s) 143, 309, 653
BfaI CTAG 2 cut(s) 69, 330
BfmI CTRYAG 1 cut(s) 771
BfoI RGCGCY 1 cut(s) 281
BfrI CTTAAG 1 cut(s) 1097
BisI GCNGC 2 cut(s) 49, 1041
BlnI CCTAGG 1 cut(s) 329
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 2 cut(s) 50, 1042
Bme1390I CCNGG 4 cut(s) 133, 301, 302, 940
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 2 cut(s) 125, 442
BmiI GGNNCC 4 cut(s) 279, 306, 327, 451
BmrFI CCNGG 4 cut(s) 133, 301, 302, 940
BmsI GCATC 2 cut(s) 1052, 1074
Bpu10I CCTNAGC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 150
BpuMI CCSGG 2 cut(s) 301, 302
Bsa29I ATCGAT 1 cut(s) 696
BsaHI GRCGYC 3 cut(s) 136, 278, 297
BsaJI CCNNGG 5 cut(s) 300, 329, 445, 651, 939
BsaWI WCCGGW 2 cut(s) 264, 523
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 426
BseAI TCCGGA 1 cut(s) 523
BseBI CCWGG 2 cut(s) 133, 940
BseCI ATCGAT 1 cut(s) 696
BseDI CCNNGG 5 cut(s) 300, 329, 445, 651, 939
BseGI GGATG 5 cut(s) 10, 128, 661, 1067, 1128
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 3 cut(s) 120, 164, 951
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 2 cut(s) 94, 146
BseXI GCAGC 1 cut(s) 1052
BsgI GTGCAG 1 cut(s) 481
BshFI GGCC 2 cut(s) 334, 444
BshNI GGYRCC 2 cut(s) 277, 304
BshTI ACCGGT 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 696
BsiHKAI GWGCWC 1 cut(s) 650
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 3 cut(s) 265, 301, 524
BslFI GGGAC 2 cut(s) 322, 790
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 3 cut(s) 143, 309, 653
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 322, 790
BsnI GGCC 2 cut(s) 334, 444
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 650
Bsp13I TCCGGA 1 cut(s) 523
Bsp1407I TGTACA 1 cut(s) 419
Bsp143I GATC 3 cut(s) 55, 325, 693
Bsp1720I GCTNAGC 1 cut(s) 150
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 3 cut(s) 48, 165, 364
BspANI GGCC 2 cut(s) 334, 444
BspCNI CTCAG 3 cut(s) 119, 163, 952
BspDI ATCGAT 1 cut(s) 696
BspEI TCCGGA 1 cut(s) 523
BspLI GGNNCC 4 cut(s) 279, 306, 327, 451
BspPI GGATC 2 cut(s) 320, 333
BspQI GCTCTTC 1 cut(s) 551
BspT107I GGYRCC 2 cut(s) 277, 304
BspTI CTTAAG 1 cut(s) 1097
BsrFI RCCGGY 1 cut(s) 264
BsrGI TGTACA 1 cut(s) 419
BsrI ACTGG 1 cut(s) 426
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 5 cut(s) 300, 329, 445, 651, 939
BssMI GATC 3 cut(s) 55, 325, 693
BssNI GRCGYC 3 cut(s) 136, 278, 297
BssT1I CCWWGG 3 cut(s) 329, 445, 651
Bst2UI CCWGG 2 cut(s) 133, 940
Bst4CI ACNGT 3 cut(s) 787, 853, 883
Bst6I CTCTTC 3 cut(s) 208, 242, 551
BstACI GRCGYC 3 cut(s) 136, 278, 297
BstAFI CTTAAG 1 cut(s) 1097
BstAUI TGTACA 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 1145
BstDEI CTNAG 5 cut(s) 106, 150, 663, 960, 965
BstDSI CCRYGG 1 cut(s) 651
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 5 cut(s) 10, 128, 661, 1067, 1128
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 3 cut(s) 58, 328, 696
BstMAI GTCTC 3 cut(s) 143, 309, 653
BstMBI GATC 3 cut(s) 55, 325, 693
BstMWI GCNNNNNNNGC 2 cut(s) 48, 541
BstNI CCWGG 2 cut(s) 133, 940
BstSCI CCNGG 4 cut(s) 131, 299, 300, 938
BstSFI CTRYAG 1 cut(s) 771
BstV1I GCAGC 1 cut(s) 1052
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 696
BsuRI GGCC 2 cut(s) 334, 444
BsuTUI ATCGAT 1 cut(s) 696
BtgI CCRYGG 1 cut(s) 651
BtsCI GGATG 5 cut(s) 10, 128, 661, 1067, 1128
BtsIMutI CAGTG 2 cut(s) 433, 792
Cac8I GCNNGC 1 cut(s) 1145
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 264
Cfr13I GGNCC 2 cut(s) 125, 442
Cfr9I CCCGGG 1 cut(s) 300
ClaI ATCGAT 1 cut(s) 696
CseI GACGC 3 cut(s) 125, 305, 476
Csp6I GTAC 4 cut(s) 420, 475, 613, 952
CspAI ACCGGT 1 cut(s) 264
CviAII CATG 3 cut(s) 652, 676, 805
CviQI GTAC 4 cut(s) 420, 475, 613, 952
DdeI CTNAG 5 cut(s) 106, 150, 663, 960, 965
DinI GGCGCC 1 cut(s) 279
DpnI GATC 3 cut(s) 57, 327, 695
DpnII GATC 3 cut(s) 55, 325, 693
Eam1104I CTCTTC 3 cut(s) 208, 242, 551
EarI CTCTTC 3 cut(s) 208, 242, 551
EciI GGCGGA 1 cut(s) 353
Eco130I CCWWGG 3 cut(s) 329, 445, 651
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 992
Eco88I CYCGRG 1 cut(s) 300
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 131, 938
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 3 cut(s) 329, 445, 651
EcoT22I ATGCAT 1 cut(s) 1067
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
ErhI CCWWGG 3 cut(s) 329, 445, 651
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 3 cut(s) 655, 679, 808
FaqI GGGAC 2 cut(s) 322, 790
FatI CATG 3 cut(s) 651, 675, 804
Fnu4HI GCNGC 2 cut(s) 49, 1041
FokI GGATG 5 cut(s) 17, 115, 668, 1074, 1115
Fsp4HI GCNGC 2 cut(s) 49, 1041
FspBI CTAG 2 cut(s) 69, 330
GlaI GCGC 1 cut(s) 279
GluI GCNGC 2 cut(s) 49, 1041
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 2 cut(s) 334, 444
HapII CCGG 3 cut(s) 265, 301, 524
HgaI GACGC 3 cut(s) 125, 305, 476
HhaI GCGC 1 cut(s) 280
Hin1I GRCGYC 3 cut(s) 136, 278, 297
Hin1II CATG 3 cut(s) 655, 679, 808
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 2 cut(s) 229, 1195
HindII GTYRAC 2 cut(s) 229, 1195
HindIII AAGCTT 1 cut(s) 1094
HinfI GANTC 7 cut(s) 8, 317, 679, 726, 969, 982, 1154
HpaII CCGG 3 cut(s) 265, 301, 524
HphI GGTGA 2 cut(s) 179, 541
Hpy166II GTNNAC 4 cut(s) 229, 291, 466, 1195
Hpy188I TCNGA 4 cut(s) 684, 887, 1011, 1078
Hpy188III TCNNGA 3 cut(s) 314, 524, 877
Hpy8I GTNNAC 4 cut(s) 229, 291, 466, 1195
HpyAV CCTTC 6 cut(s) 106, 382, 885, 1006, 1104, 1199
HpyCH4III ACNGT 3 cut(s) 787, 853, 883
HpyCH4IV ACGT 1 cut(s) 686
HpyCH4V TGCA 7 cut(s) 431, 498, 790, 902, 1065, 1135, 1143
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 541
HpyF3I CTNAG 5 cut(s) 106, 150, 663, 960, 965
HpySE526I ACGT 1 cut(s) 686
Hsp92I GRCGYC 3 cut(s) 136, 278, 297
Hsp92II CATG 3 cut(s) 655, 679, 808
HspAI GCGC 1 cut(s) 278
KasI GGCGCC 1 cut(s) 277
Kpn2I TCCGGA 1 cut(s) 523
Kzo9I GATC 3 cut(s) 55, 325, 693
LguI GCTCTTC 1 cut(s) 551
LmnI GCTCC 3 cut(s) 98, 159, 261
Lsp1109I GCAGC 1 cut(s) 1052
LweI GCATC 2 cut(s) 1052, 1074
MaeI CTAG 2 cut(s) 69, 330
MaeII ACGT 1 cut(s) 686
MaeIII GTNAC 8 cut(s) 267, 487, 620, 835, 844, 1018, 1114, 1208
MalI GATC 3 cut(s) 57, 327, 695
MboI GATC 3 cut(s) 55, 325, 693
MboII GAAGA 9 cut(s) 8, 65, 195, 198, 259, 538, 550, 723, 998
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 650
Mly113I GGCGCC 1 cut(s) 278
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 2 cut(s) 283, 865
Mph1103I ATGCAT 1 cut(s) 1067
MroI TCCGGA 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 4 cut(s) 356, 816, 1050, 1098
MslI CAYNNNNRTG 1 cut(s) 851
MspCI CTTAAG 1 cut(s) 1097
MspI CCGG 3 cut(s) 265, 301, 524
MspR9I CCNGG 4 cut(s) 133, 301, 302, 940
MunI CAATTG 1 cut(s) 903
MvaI CCWGG 2 cut(s) 133, 940
MwoI GCNNNNNNNGC 2 cut(s) 48, 541
NarI GGCGCC 1 cut(s) 278
NciI CCSGG 2 cut(s) 301, 302
NcoI CCATGG 1 cut(s) 651
NdeII GATC 3 cut(s) 55, 325, 693
NlaIII CATG 3 cut(s) 655, 679, 808
NlaIV GGNNCC 4 cut(s) 279, 306, 327, 451
NmeAIII GCCGAG 1 cut(s) 254
NmuCI GTSAC 4 cut(s) 267, 487, 620, 844
NsiI ATGCAT 1 cut(s) 1067
OliI CACNNNNGTG 1 cut(s) 851
PciSI GCTCTTC 1 cut(s) 551
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 6 cut(s) 8, 679, 726, 969, 982, 1154
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 2 cut(s) 50, 1042
PleI GAGTC 1 cut(s) 311
PluTI GGCGCC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 311
PshBI ATTAAT 1 cut(s) 816
Psp6I CCWGG 2 cut(s) 131, 938
PspGI CCWGG 2 cut(s) 131, 938
PspN4I GGNNCC 4 cut(s) 279, 306, 327, 451
PspPI GGNCC 2 cut(s) 125, 442
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 4 cut(s) 421, 476, 614, 953
RsaNI GTAC 4 cut(s) 420, 475, 613, 952
RseI CAYNNNNRTG 1 cut(s) 851
SapI GCTCTTC 1 cut(s) 551
SaqAI TTAA 4 cut(s) 356, 816, 1050, 1098
SatI GCNGC 2 cut(s) 49, 1041
Sau3AI GATC 3 cut(s) 55, 325, 693
Sau96I GGNCC 2 cut(s) 125, 442
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 4 cut(s) 133, 301, 302, 940
SduI GDGCHC 1 cut(s) 650
SfaNI GCATC 2 cut(s) 1052, 1074
SfcI CTRYAG 1 cut(s) 771
SfoI GGCGCC 1 cut(s) 279
SinI GGWCC 1 cut(s) 125
SmaI CCCGGG 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 851
SmlI CTYRAG 1 cut(s) 1097
SmoI CTYRAG 1 cut(s) 1097
SsiI CCGC 3 cut(s) 48, 165, 364
SspDI GGCGCC 1 cut(s) 277
SspMI CTAG 2 cut(s) 69, 330
StyD4I CCNGG 4 cut(s) 131, 299, 300, 938
StyI CCWWGG 3 cut(s) 329, 445, 651
TaaI ACNGT 3 cut(s) 787, 853, 883
TaiI ACGT 1 cut(s) 689
TaqI TCGA 3 cut(s) 313, 696, 972
TatI WGTACW 3 cut(s) 419, 474, 951
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 6 cut(s) 8, 679, 726, 969, 982, 1154
Tru1I TTAA 4 cut(s) 356, 816, 1050, 1098
Tru9I TTAA 4 cut(s) 356, 816, 1050, 1098
TscAI CASTG 2 cut(s) 433, 792
TseFI GTSAC 4 cut(s) 267, 487, 620, 844
TseI GCWGC 1 cut(s) 1040
Tsp45I GTSAC 4 cut(s) 267, 487, 620, 844
TspDTI ATGAA 5 cut(s) 21, 364, 469, 550, 571
TspGWI ACGGA 1 cut(s) 1133
TspMI CCCGGG 1 cut(s) 300
TspRI CASTG 2 cut(s) 433, 792
Vha464I CTTAAG 1 cut(s) 1097
VpaK11BI GGWCC 1 cut(s) 125
VspI ATTAAT 1 cut(s) 816
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 2 cut(s) 433, 1137
XmaI CCCGGG 1 cut(s) 300
XmaJI CCTAGG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 2 cut(s) 69, 330
Zsp2I ATGCAT 1 cut(s) 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.