pycom17g13150

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016898
Physical Location & Seq
Reverse (-)
10833294 .. 10834726
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g13150.2

Sequence Viewer

Length: 1194 bp
ATGGACGAACCTTTTATTTCCAGGACCGAGACAGCACTTGGTGTCGGAGGTGACGACCAACAAGTAGAGTCTTCGAGCACTTCAACGGCCCGATCACCACGAAGAAGAAGCCACCCCTCAGGTTACCTTGACGTAGTCAGCTCTGATGTTATCCTCCCCATCATTGCAACACCAAACTCTACCTCCTACGCCAATCTCATCGCGAACCTGAACAAGAACAAGCGAAGGAAGCTCAAGCGCCGCTCCCACTCAGCTCCCTTGGTGTTCACTGGCACCAAGGAGCTCATTCAAGACTCCCTGGATGATCCAAGACCTGCCCATAAATCAACACCCTTCATTGTTCGCCAGGCCTTCATCGGCGTCATTGTCTATGTCATTATCGGCATTGTCATAATCTTGACAGCCGGGGGTTTCAAGGGGAAAGCCACTTACAAGCCGGTTGATGCCTTGTACTTCATTGTGGTCACGCTCTGTACGATTGGATATGGTGACATTGTTCCTGACACGACGGCTACCAAGCTCTTCACCTGTTTCTTCATCTTGGTTGGTTTTGGATTCATCGACATTCTGCTGAACGGGTTGGTGGTGTACATCTGCGACAGGCAAGAATTGGTGTTGCTGAGCACTATCGATGAGACAAAGTTCAACCACATGATTCAGACGTACATGATCGATAAAGAGAAAGGAAGAATGAGAATAAGGATCAAGGTCGGGTTGGCATTGGGAGTGGTTATTGGTTGTATAGCTATAGGGACAATTGCAGTACATTTTCTGGAGCAGATGAGCTGGGTTGATAGTTTTTACCTCTCTGTTACTTCTGTGACAACGGTAGGTTACGGCGATTTCGCTTTCCAGACAGTTGGGGGTAGGTGTTTTGCAATAATCTGGTTACTGGTTAGCACATTAGCTGTTGCTAGGGCTTTTCTGTACTTGACTGAGCTTAGAATCGACAAGCGGAATCGCCGAATCGCGAAATGGGTTCTTCAGAAGGAGATCACCCTCAGGGACCTATTGGCAGCAGACCTAGATAATGATGGATGCATCAGCAAATCAGAGTTCGTCATATACAAGCTGAAGGAGATGGGGAGAGTAGCAGAGAGTGACATCCTGCAGATATCCAAGCAATTTGATTCTTTGGAACACAACAACAGTGGCAAAATTACTCTTGTTGATCTAATGGGAAGCAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

398

Amino Acids

44.1

Weight (kDa)

8.88

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016898)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g38350
malus_domestica MD09G1150900.v1.1
prunus_persica Prupe.3G174100_v2.0.a1
pyrus_communis pycom09g07070 pycom17g13150
rosa_chinensis RchiOBHm_Chr2g0151661
rosa_multiflora Rmu_sc0005294.1_g000051
rosa_roxburghii Rroxscaffold_2G00096280
rosa_rugosa Rorug02G0427600
rosa_samantha Rh2AG488500 Rh2BG501200 Rh2CG475000 Rh2DG512300
rosa_wichuraiana Rw2G040060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 272
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 2 cut(s) 203, 971
AciI CCGC 2 cut(s) 241, 955
AclWI GGATC 2 cut(s) 299, 710
AcuI CTGAAG 2 cut(s) 968, 1094
AcyI GRCGYC 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 41
AfaI GTAC 6 cut(s) 452, 475, 590, 665, 765, 929
AflIII ACRYGT 1 cut(s) 1188
AgsI TTSAA 4 cut(s) 84, 290, 415, 646
AjnI CCWGG 3 cut(s) 20, 297, 345
Alw21I GWGCWC 3 cut(s) 80, 285, 626
Alw26I GTCTC 2 cut(s) 23, 629
AlwI GGATC 2 cut(s) 299, 710
AoxI GGCC 2 cut(s) 87, 348
ApeKI GCWGC 1 cut(s) 1016
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 3 cut(s) 24, 88, 1006
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 5 cut(s) 62, 87, 500, 517, 988
AvaII GGWCC 2 cut(s) 24, 1006
AxyI CCTNAGG 2 cut(s) 118, 1001
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 3 cut(s) 80, 285, 626
BbvI GCAGC 1 cut(s) 1028
BccI CCATC 3 cut(s) 167, 1028, 1075
BceAI ACGGC 3 cut(s) 102, 525, 853
BciT130I CCWGG 3 cut(s) 22, 299, 347
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 23, 629
BfaI CTAG 2 cut(s) 915, 1025
BfmI CTRYAG 2 cut(s) 747, 1109
BfoI RGCGCY 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 2 cut(s) 241, 1017
BlpI GCTNAGC 1 cut(s) 620
BlsI GCNGC 2 cut(s) 242, 1018
Bme1390I CCNGG 4 cut(s) 22, 299, 347, 406
Bme18I GGWCC 2 cut(s) 24, 1006
BmgT120I GGNCC 3 cut(s) 24, 88, 1006
BmiI GGNNCC 2 cut(s) 274, 1007
BmrFI CCNGG 4 cut(s) 22, 299, 347, 406
BmsI GCATC 3 cut(s) 433, 1028, 1050
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 794
Bpu1102I GCTNAGC 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 406
Bsa29I ATCGAT 2 cut(s) 630, 672
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 258, 276, 297, 405
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 2 cut(s) 274, 897
Bse21I CCTNAGG 2 cut(s) 118, 1001
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 3 cut(s) 22, 299, 347
BseCI ATCGAT 2 cut(s) 630, 672
BseDI CCNNGG 4 cut(s) 258, 276, 297, 405
BseGI GGATG 3 cut(s) 307, 1043, 1104
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 5 cut(s) 132, 264, 611, 927, 1015
BseNI ACTGG 2 cut(s) 274, 897
BseXI GCAGC 1 cut(s) 1028
BseYI CCCAGC 1 cut(s) 786
Bsh1236I CGCG 2 cut(s) 203, 971
BshFI GGCC 2 cut(s) 89, 350
BshNI GGYRCC 1 cut(s) 272
BshVI ATCGAT 2 cut(s) 630, 672
BsiHKAI GWGCWC 3 cut(s) 80, 285, 626
BsiSI CCGG 2 cut(s) 405, 437
BslFI GGGAC 2 cut(s) 766, 1019
BsmAI GTCTC 2 cut(s) 23, 629
BsmFI GGGAC 2 cut(s) 766, 1019
BsnI GGCC 2 cut(s) 89, 350
Bsp1286I GDGCHC 3 cut(s) 80, 285, 626
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
Bsp1720I GCTNAGC 1 cut(s) 620
Bsp68I TCGCGA 2 cut(s) 203, 971
BspACI CCGC 2 cut(s) 241, 955
BspANI GGCC 2 cut(s) 89, 350
BspCNI CTCAG 5 cut(s) 131, 263, 612, 928, 1014
BspDI ATCGAT 2 cut(s) 630, 672
BspFNI CGCG 2 cut(s) 203, 971
BspLI GGNNCC 2 cut(s) 274, 1007
BspMAI CTGCAG 1 cut(s) 1113
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 2 cut(s) 299, 710
BspQI GCTCTTC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 2 cut(s) 274, 897
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 4 cut(s) 258, 276, 297, 405
BssMI GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 258, 276
Bst2UI CCWGG 3 cut(s) 22, 299, 347
Bst4CI ACNGT 3 cut(s) 829, 859, 1151
Bst6I CTCTTC 1 cut(s) 527
BstACI GRCGYC 1 cut(s) 360
BstAUI TGTACA 1 cut(s) 588
BstDEI CTNAG 6 cut(s) 118, 250, 620, 936, 941, 1001
BstEII GGTNACC 1 cut(s) 122
BstF5I GGATG 3 cut(s) 307, 1043, 1104
BstFNI CGCG 2 cut(s) 203, 971
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 6 cut(s) 95, 307, 672, 705, 996, 1174
BstMAI GTCTC 2 cut(s) 23, 629
BstMBI GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 3 cut(s) 22, 299, 347
BstNSI RCATGY 1 cut(s) 1192
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 4 cut(s) 20, 297, 345, 404
BstSFI CTRYAG 2 cut(s) 747, 1109
BstUI CGCG 2 cut(s) 203, 971
BstV1I GCAGC 1 cut(s) 1028
BstV2I GAAGAC 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 860
Bsu15I ATCGAT 2 cut(s) 630, 672
Bsu36I CCTNAGG 2 cut(s) 118, 1001
BsuRI GGCC 2 cut(s) 89, 350
BsuTUI ATCGAT 2 cut(s) 630, 672
BtgZI GCGATG 1 cut(s) 184
BtsCI GGATG 3 cut(s) 307, 1043, 1104
BtsIMutI CAGTG 2 cut(s) 267, 1156
BtuMI TCGCGA 2 cut(s) 203, 971
BveI ACCTGC 1 cut(s) 322
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 3 cut(s) 24, 88, 1006
ClaI ATCGAT 2 cut(s) 630, 672
CseI GACGC 1 cut(s) 349
Csp6I GTAC 6 cut(s) 451, 474, 589, 664, 764, 928
CspCI CAANNNNNGTGG 2 cut(s) 1132, 1167
CviAII CATG 3 cut(s) 652, 667, 1189
CviQI GTAC 6 cut(s) 451, 474, 589, 664, 764, 928
DdeI CTNAG 6 cut(s) 118, 250, 620, 936, 941, 1001
DpnI GATC 6 cut(s) 94, 306, 671, 704, 995, 1173
DpnII GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
DraIII CACNNNGTG 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 258, 276
Eco147I AGGCCT 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 285
Eco32I GATATC 1 cut(s) 1116
Eco47I GGWCC 2 cut(s) 24, 1006
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 2 cut(s) 968, 1094
Eco81I CCTNAGG 2 cut(s) 118, 1001
Eco91I GGTNACC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 1006
EcoO65I GGTNACC 1 cut(s) 122
EcoRII CCWGG 3 cut(s) 20, 297, 345
EcoRV GATATC 1 cut(s) 1116
EcoT14I CCWWGG 2 cut(s) 258, 276
EcoT22I ATGCAT 1 cut(s) 1043
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 2 cut(s) 258, 276
FaeI CATG 3 cut(s) 655, 670, 1192
FaqI GGGAC 2 cut(s) 766, 1019
FatI CATG 3 cut(s) 651, 666, 1188
Fnu4HI GCNGC 2 cut(s) 241, 1017
FokI GGATG 3 cut(s) 314, 1050, 1091
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 241, 1017
FspBI CTAG 2 cut(s) 915, 1025
GlaI GCGC 1 cut(s) 239
GluI GCNGC 2 cut(s) 241, 1017
GsaI CCCAGC 1 cut(s) 790
GsuI CTGGAG 1 cut(s) 794
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 89, 350
HapII CCGG 2 cut(s) 405, 437
HgaI GACGC 1 cut(s) 349
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 3 cut(s) 655, 670, 1192
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 8 cut(s) 68, 293, 555, 655, 945, 958, 966, 1130
HpaII CCGG 2 cut(s) 405, 437
HphI GGTGA 5 cut(s) 62, 87, 500, 517, 988
Hpy166II GTNNAC 2 cut(s) 267, 589
Hpy188I TCNGA 5 cut(s) 47, 145, 660, 987, 1054
Hpy188III TCNNGA 7 cut(s) 202, 290, 397, 500, 773, 853, 970
Hpy8I GTNNAC 2 cut(s) 267, 589
Hpy99I CGWCG 1 cut(s) 511
HpyAV CCTTC 5 cut(s) 219, 343, 361, 982, 1069
HpyCH4III ACNGT 3 cut(s) 829, 859, 1151
HpyCH4IV ACGT 2 cut(s) 132, 662
HpyCH4V TGCA 5 cut(s) 167, 761, 878, 1041, 1111
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 6 cut(s) 118, 250, 620, 936, 941, 1001
HpySE526I ACGT 2 cut(s) 132, 662
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 3 cut(s) 655, 670, 1192
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 4 cut(s) 248, 259, 280, 775
Lsp1109I GCAGC 1 cut(s) 1028
LweI GCATC 3 cut(s) 433, 1028, 1050
MaeI CTAG 2 cut(s) 915, 1025
MaeII ACGT 2 cut(s) 132, 662
MaeIII GTNAC 9 cut(s) 50, 122, 463, 488, 811, 820, 833, 888, 1100
MalI GATC 6 cut(s) 94, 306, 671, 704, 995, 1173
MbiI CCGCTC 1 cut(s) 243
MboI GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
MboII GAAGA 7 cut(s) 63, 114, 117, 514, 526, 699, 974
MfeI CAATTG 1 cut(s) 756
MhlI GDGCHC 3 cut(s) 80, 285, 626
MluCI AATT 4 cut(s) 608, 756, 1124, 1158
MlyI GAGTC 2 cut(s) 77, 287
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 6 cut(s) 41, 127, 164, 193, 815, 1010
Mph1103I ATGCAT 1 cut(s) 1043
MspI CCGG 2 cut(s) 405, 437
MspR9I CCNGG 4 cut(s) 22, 299, 347, 406
MunI CAATTG 1 cut(s) 756
MvaI CCWGG 3 cut(s) 22, 299, 347
MvnI CGCG 2 cut(s) 203, 971
MwoI GCNNNNNNNGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 406
NdeII GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
NlaIII CATG 3 cut(s) 655, 670, 1192
NlaIV GGNNCC 2 cut(s) 274, 1007
NmuCI GTSAC 5 cut(s) 50, 463, 488, 820, 1100
NruI TCGCGA 2 cut(s) 203, 971
NsiI ATGCAT 1 cut(s) 1043
NspI RCATGY 1 cut(s) 1192
PceI AGGCCT 1 cut(s) 350
PciI ACATGT 1 cut(s) 1188
PciSI GCTCTTC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 473
PfeI GAWTC 6 cut(s) 555, 655, 945, 958, 966, 1130
PflFI GACNNNGTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 20
PkrI GCNGC 2 cut(s) 242, 1018
PleI GAGTC 2 cut(s) 76, 287
PpsI GAGTC 2 cut(s) 76, 287
PpuMI RGGWCCY 1 cut(s) 1006
PscI ACATGT 1 cut(s) 1188
Psp124BI GAGCTC 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 1006
Psp6I CCWGG 3 cut(s) 20, 297, 345
PspEI GGTNACC 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 786
PspGI CCWGG 3 cut(s) 20, 297, 345
PspN4I GGNNCC 2 cut(s) 274, 1007
PspPI GGNCC 3 cut(s) 24, 88, 1006
PspPPI RGGWCCY 1 cut(s) 1006
PstI CTGCAG 1 cut(s) 1113
PsyI GACNNNGTC 1 cut(s) 134
RruI TCGCGA 2 cut(s) 203, 971
RsaI GTAC 6 cut(s) 452, 475, 590, 665, 765, 929
RsaNI GTAC 6 cut(s) 451, 474, 589, 664, 764, 928
SacI GAGCTC 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 527
SatI GCNGC 2 cut(s) 241, 1017
Sau3AI GATC 6 cut(s) 92, 304, 669, 702, 993, 1171
Sau96I GGNCC 3 cut(s) 24, 88, 1006
SchI GAGTC 2 cut(s) 77, 287
ScrFI CCNGG 4 cut(s) 22, 299, 347, 406
SduI GDGCHC 3 cut(s) 80, 285, 626
SfaNI GCATC 3 cut(s) 433, 1028, 1050
SfcI CTRYAG 2 cut(s) 747, 1109
SinI GGWCC 2 cut(s) 24, 1006
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 4 cut(s) 608, 756, 1124, 1158
SseBI AGGCCT 1 cut(s) 350
SsiI CCGC 2 cut(s) 241, 955
SspMI CTAG 2 cut(s) 915, 1025
SstI GAGCTC 1 cut(s) 285
StuI AGGCCT 1 cut(s) 350
StyD4I CCNGG 4 cut(s) 20, 297, 345, 404
StyI CCWWGG 2 cut(s) 258, 276
TaaI ACNGT 3 cut(s) 829, 859, 1151
TaiI ACGT 2 cut(s) 135, 665
TaqI TCGA 5 cut(s) 74, 561, 630, 672, 948
TaqII GACCGA 1 cut(s) 41
TasI AATT 4 cut(s) 608, 756, 1124, 1158
TatI WGTACW 4 cut(s) 450, 588, 763, 927
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 6 cut(s) 555, 655, 945, 958, 966, 1130
TscAI CASTG 2 cut(s) 274, 1156
TseFI GTSAC 5 cut(s) 50, 463, 488, 820, 1100
TseI GCWGC 1 cut(s) 1016
Tsp45I GTSAC 5 cut(s) 50, 463, 488, 820, 1100
TspDTI ATGAA 5 cut(s) 325, 343, 445, 526, 547
TspRI CASTG 2 cut(s) 274, 1156
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 2 cut(s) 24, 1006
XceI RCATGY 1 cut(s) 1192
XspI CTAG 2 cut(s) 915, 1025
Zsp2I ATGCAT 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.