pycom09g07070

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016898
Physical Location & Seq
Reverse (-)
5253344 .. 5254860
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g07070.1

Sequence Viewer

Length: 1203 bp
ATGGACGAACCTTTACTTTCCAGGATTCAGACAGCACTTGGTGTCGGAGGTGACGATCAACAAGTAGAGTCTTCGAGCAGATCAACGGCCAGGACACCCAGAACACCGCGAAGAAGAAGCTACCCCTCAGGTTACCTTGATGTACTCAACTCCGATGTTATTGTCCCCATCATCACAACACCAAACTCTTCCTCCTACGCCAATCTCCTCGCGAACCTGAACAAGAACAAGCGGAGGCAGCTCAAGCACCGCTCCCACTCAGCTCCCTCGGTGTTCACTGACATCAAGGAGCTGATTCAAGACCCCGTCGATGATCCAAGACCTGCCCCTAAATCAACCCCTCTCATTGTTCGCCAGGCTTTCATCGGTGTCATTATCTATGTCATCATCGGCATTATCATAATCTTGACGACCGGGGGTTTCAAGGGAGAAGTCACTTACAAGCCGGTTGATGCCTTGTACTTCATTGTGGTCACGCTCTGTACGATTGGCTATGGTGACATTGTTCCTGACACGACCGGTACCAAGCTCTTCACCTGTTTCTTCATCTTGGTCGGTTTTGGATTCATCGATATCCTGCTCAACGGTTTGGTGGTGTACATCTGCGACAGGCAAGAATCGGTGTTGTTGAGCACCATTGATGAGACGAAGTTCAACCACATGATTCAGACGTACATGATCGACAAAGAGAAAGGACGAATGAGGATAAGGATCAAGGTAGGGTTGGCACTGGGAGTGGTGATTGGTTGTATAGCTATAGGGACAATTGCAGTACATTTTCTCGAGAAGATAAGCTGGGTTGATAGTTTCTACCTCTCTGTTACTTCAGTCACAACTGTAGGTTATGGCGATTTCGGTTTCCAGACAATTGCAGGTAGGTGTTTTGCAATAATCTGGTTACTGGTTAGCACATTAGCTGTCGCTAGGGCTTTTCTGTACCTGACCGAGCTTAGAATCGACAAGCGGAATCGTCGAATCGCGAAATGGGTTCTTCAGAAGGAGATCACCCTCAGGGATTTGTTGGCAGCAGACCTGGATAATGATGGATGCATCAGCAAAGCGGAGTTCGTCATATACAAGCTTAAGGAGATGGGGAGAGTGGCAGAGAATGATATTCTGCAGATATGCAAGCAATTTGATTCTTTGGAACATAGCAACAATGACAAAATTACTCTTGTTGATCTAATGGGAAGCGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

401

Amino Acids

44.64

Weight (kDa)

8.36

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 121 - 193 9.6e-06 Ion transport protein
Ion_trans_2 PF07885 125 - 198 6.7e-13 Ion channel
Ion_trans_2 PF07885 247 - 315 5.8e-13 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016898)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g38350
malus_domestica MD09G1150900.v1.1
prunus_persica Prupe.3G174100_v2.0.a1
pyrus_communis pycom09g07070 pycom17g13150
rosa_chinensis RchiOBHm_Chr2g0151661
rosa_multiflora Rmu_sc0005294.1_g000051
rosa_roxburghii Rroxscaffold_2G00096280
rosa_rugosa Rorug02G0427600
rosa_samantha Rh2AG488500 Rh2BG501200 Rh2CG475000 Rh2DG512300
rosa_wichuraiana Rw2G040060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 331, 863
Acc65I GGTACC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 521
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 3 cut(s) 109, 212, 980
AciI CCGC 5 cut(s) 107, 232, 250, 964, 1061
AclWI GGATC 2 cut(s) 308, 719
AcoI YGGCCR 1 cut(s) 87
AcuI CTGAAG 2 cut(s) 810, 977
AdeI CACNNNGTG 1 cut(s) 41
AfaI GTAC 8 cut(s) 144, 461, 484, 523, 599, 674, 774, 938
AflII CTTAAG 1 cut(s) 1082
AflIII ACRYGT 1 cut(s) 1197
AgeI ACCGGT 1 cut(s) 518
AgsI TTSAA 3 cut(s) 299, 424, 655
AjnI CCWGG 4 cut(s) 20, 89, 354, 1032
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 1 cut(s) 638
AlwI GGATC 2 cut(s) 308, 719
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 238, 1025
AsiGI ACCGGT 1 cut(s) 518
Asp718I GGTACC 1 cut(s) 521
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 5 cut(s) 62, 509, 526, 751, 997
AvaI CYCGRG 1 cut(s) 782
AxyI CCTNAGG 2 cut(s) 127, 1010
BanI GGYRCC 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 2 cut(s) 250, 1037
BccI CCATC 3 cut(s) 176, 1037, 1084
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 4 cut(s) 22, 91, 356, 1034
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 638
BfaI CTAG 1 cut(s) 924
BfmI CTRYAG 3 cut(s) 756, 837, 1118
BfrI CTTAAG 1 cut(s) 1082
BfuAI ACCTGC 2 cut(s) 331, 863
BisI GCNGC 2 cut(s) 239, 1026
BlsI GCNGC 2 cut(s) 240, 1027
Bme1390I CCNGG 5 cut(s) 22, 91, 356, 415, 1034
BmeT110I CYCGRG 1 cut(s) 782
BmiI GGNNCC 1 cut(s) 523
BmrFI CCNGG 5 cut(s) 22, 91, 356, 415, 1034
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 3 cut(s) 442, 1037, 1059
BmuI ACTGGG 1 cut(s) 740
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 415
Bsa29I ATCGAT 1 cut(s) 570
BsaBI GATNNNNATC 1 cut(s) 710
BsaJI CCNNGG 2 cut(s) 267, 414
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bse118I RCCGGY 2 cut(s) 445, 518
Bse1I ACTGG 2 cut(s) 735, 906
Bse21I CCTNAGG 2 cut(s) 127, 1010
Bse8I GATNNNNATC 1 cut(s) 710
BseBI CCWGG 4 cut(s) 22, 91, 356, 1034
BseCI ATCGAT 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 267, 414
BseGI GGATG 1 cut(s) 1052
BseJI GATNNNNATC 1 cut(s) 710
BseMII CTCAG 3 cut(s) 141, 273, 1024
BseNI ACTGG 2 cut(s) 735, 906
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 250, 1037
BseYI CCCAGC 1 cut(s) 795
Bsh1236I CGCG 3 cut(s) 109, 212, 980
Bsh1285I CGRYCG 2 cut(s) 414, 519
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 521
BshTI ACCGGT 1 cut(s) 518
BshVI ATCGAT 1 cut(s) 570
BsiEI CGRYCG 2 cut(s) 414, 519
BsiHKAI GWGCWC 1 cut(s) 635
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 3 cut(s) 414, 446, 519
BslFI GGGAC 2 cut(s) 149, 775
BsmAI GTCTC 1 cut(s) 638
BsmBI CGTCTC 1 cut(s) 638
BsmFI GGGAC 2 cut(s) 149, 775
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 635
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 7 cut(s) 55, 80, 313, 678, 711, 1002, 1180
Bsp68I TCGCGA 2 cut(s) 212, 980
BspACI CCGC 5 cut(s) 107, 232, 250, 964, 1061
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 3 cut(s) 140, 272, 1023
BspDI ATCGAT 1 cut(s) 570
BspFNI CGCG 3 cut(s) 109, 212, 980
BspLI GGNNCC 1 cut(s) 523
BspMAI CTGCAG 1 cut(s) 1122
BspMI ACCTGC 2 cut(s) 331, 863
BspPI GGATC 2 cut(s) 308, 719
BspQI GCTCTTC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 521
BspTI CTTAAG 1 cut(s) 1082
BsrBI CCGCTC 1 cut(s) 252
BsrFI RCCGGY 2 cut(s) 445, 518
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 2 cut(s) 735, 906
BssAI RCCGGY 2 cut(s) 445, 518
BssECI CCNNGG 2 cut(s) 267, 414
BssMI GATC 7 cut(s) 55, 80, 313, 678, 711, 1002, 1180
Bst2UI CCWGG 4 cut(s) 22, 91, 356, 1034
Bst4CI ACNGT 2 cut(s) 587, 838
Bst6I CTCTTC 2 cut(s) 193, 536
BstAFI CTTAAG 1 cut(s) 1082
BstAUI TGTACA 1 cut(s) 597
BstC8I GCNNGC 1 cut(s) 1130
BstDEI CTNAG 4 cut(s) 127, 259, 950, 1010
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 1 cut(s) 1052
BstFNI CGCG 3 cut(s) 109, 212, 980
BstKTI GATC 7 cut(s) 58, 83, 316, 681, 714, 1005, 1183
BstMAI GTCTC 1 cut(s) 638
BstMBI GATC 7 cut(s) 55, 80, 313, 678, 711, 1002, 1180
BstMCI CGRYCG 2 cut(s) 414, 519
BstMWI GCNNNNNNNGC 2 cut(s) 238, 244
BstNI CCWGG 4 cut(s) 22, 91, 356, 1034
BstNSI RCATGY 1 cut(s) 1201
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 5 cut(s) 20, 89, 354, 413, 1032
BstSFI CTRYAG 3 cut(s) 756, 837, 1118
BstUI CGCG 3 cut(s) 109, 212, 980
BstV1I GCAGC 2 cut(s) 250, 1037
BstV2I GAAGAC 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 570
Bsu36I CCTNAGG 2 cut(s) 127, 1010
BsuRI GGCC 1 cut(s) 89
BsuTUI ATCGAT 1 cut(s) 570
BtsCI GGATG 1 cut(s) 1052
BtsIMutI CAGTG 2 cut(s) 276, 728
BtuMI TCGCGA 2 cut(s) 212, 980
BveI ACCTGC 2 cut(s) 331, 863
Cac8I GCNNGC 1 cut(s) 1130
Cfr10I RCCGGY 2 cut(s) 445, 518
ClaI ATCGAT 1 cut(s) 570
Csp6I GTAC 8 cut(s) 143, 460, 483, 522, 598, 673, 773, 937
CspAI ACCGGT 1 cut(s) 518
CviAII CATG 3 cut(s) 661, 676, 1198
CviQI GTAC 8 cut(s) 143, 460, 483, 522, 598, 673, 773, 937
DdeI CTNAG 4 cut(s) 127, 259, 950, 1010
DpnI GATC 7 cut(s) 57, 82, 315, 680, 713, 1004, 1182
DpnII GATC 7 cut(s) 55, 80, 313, 678, 711, 1002, 1180
DraIII CACNNNGTG 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 193, 536
EarI CTCTTC 2 cut(s) 193, 536
Eco32I GATATC 1 cut(s) 574
Eco57I CTGAAG 2 cut(s) 810, 977
Eco81I CCTNAGG 2 cut(s) 127, 1010
Eco88I CYCGRG 1 cut(s) 782
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EcoRII CCWGG 4 cut(s) 20, 89, 354, 1032
EcoRV GATATC 1 cut(s) 574
EcoT22I ATGCAT 1 cut(s) 1052
Esp3I CGTCTC 1 cut(s) 638
FaeI CATG 3 cut(s) 664, 679, 1201
FaqI GGGAC 2 cut(s) 149, 775
FatI CATG 3 cut(s) 660, 675, 1197
Fnu4HI GCNGC 2 cut(s) 239, 1026
FokI GGATG 1 cut(s) 1059
Fsp4HI GCNGC 2 cut(s) 239, 1026
FspBI CTAG 1 cut(s) 924
GluI GCNGC 2 cut(s) 239, 1026
GsaI CCCAGC 1 cut(s) 799
HaeIII GGCC 1 cut(s) 89
HapII CCGG 3 cut(s) 414, 446, 519
Hin1II CATG 3 cut(s) 664, 679, 1201
HindIII AAGCTT 1 cut(s) 1079
HpaII CCGG 3 cut(s) 414, 446, 519
HphI GGTGA 5 cut(s) 62, 509, 526, 751, 997
Hpy166II GTNNAC 2 cut(s) 276, 598
Hpy188I TCNGA 5 cut(s) 30, 47, 154, 669, 996
Hpy188III TCNNGA 8 cut(s) 211, 299, 406, 509, 782, 784, 862, 979
Hpy8I GTNNAC 2 cut(s) 276, 598
Hpy99I CGWCG 2 cut(s) 311, 975
HpyAV CCTTC 1 cut(s) 991
HpyCH4III ACNGT 2 cut(s) 587, 838
HpyCH4IV ACGT 1 cut(s) 671
HpyCH4V TGCA 6 cut(s) 770, 872, 887, 1050, 1120, 1128
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 244
HpyF3I CTNAG 4 cut(s) 127, 259, 950, 1010
HpySE526I ACGT 1 cut(s) 671
Hsp92II CATG 3 cut(s) 664, 679, 1201
KpnI GGTACC 1 cut(s) 525
Kzo9I GATC 7 cut(s) 55, 80, 313, 678, 711, 1002, 1180
LguI GCTCTTC 1 cut(s) 536
LmnI GCTCC 3 cut(s) 257, 268, 289
Lsp1109I GCAGC 2 cut(s) 250, 1037
LweI GCATC 3 cut(s) 442, 1037, 1059
MaeI CTAG 1 cut(s) 924
MaeII ACGT 1 cut(s) 671
MaeIII GTNAC 8 cut(s) 50, 131, 433, 472, 497, 820, 829, 897
MalI GATC 7 cut(s) 57, 82, 315, 680, 713, 1004, 1182
MbiI CCGCTC 1 cut(s) 252
MboI GATC 7 cut(s) 55, 80, 313, 678, 711, 1002, 1180
MboII GAAGA 8 cut(s) 63, 123, 126, 180, 523, 535, 799, 983
MfeI CAATTG 2 cut(s) 765, 867
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 4 cut(s) 765, 867, 1133, 1167
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 25
Mph1103I ATGCAT 1 cut(s) 1052
MseI TTAA 1 cut(s) 1083
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 3 cut(s) 414, 446, 519
MspR9I CCNGG 5 cut(s) 22, 91, 356, 415, 1034
MunI CAATTG 2 cut(s) 765, 867
MvaI CCWGG 4 cut(s) 22, 91, 356, 1034
MvnI CGCG 3 cut(s) 109, 212, 980
MwoI GCNNNNNNNGC 2 cut(s) 238, 244
NciI CCSGG 1 cut(s) 415
NdeII GATC 7 cut(s) 55, 80, 313, 678, 711, 1002, 1180
NlaIII CATG 3 cut(s) 664, 679, 1201
NlaIV GGNNCC 1 cut(s) 523
NmuCI GTSAC 5 cut(s) 50, 433, 472, 497, 829
NruI TCGCGA 2 cut(s) 212, 980
NsiI ATGCAT 1 cut(s) 1052
NspI RCATGY 1 cut(s) 1201
PaeR7I CTCGAG 1 cut(s) 782
PciI ACATGT 1 cut(s) 1197
PciSI GCTCTTC 1 cut(s) 536
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 482
PfeI GAWTC 9 cut(s) 25, 295, 564, 617, 664, 954, 967, 975, 1139
PflFI GACNNNGTC 1 cut(s) 305
PfoI TCCNGGA 1 cut(s) 20
PinAI ACCGGT 1 cut(s) 518
PkrI GCNGC 2 cut(s) 240, 1027
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PscI ACATGT 1 cut(s) 1197
Psp6I CCWGG 4 cut(s) 20, 89, 354, 1032
PspEI GGTNACC 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 795
PspGI CCWGG 4 cut(s) 20, 89, 354, 1032
PspN4I GGNNCC 1 cut(s) 523
PstI CTGCAG 1 cut(s) 1122
PsyI GACNNNGTC 1 cut(s) 305
RruI TCGCGA 2 cut(s) 212, 980
RsaI GTAC 8 cut(s) 144, 461, 484, 523, 599, 674, 774, 938
RsaNI GTAC 8 cut(s) 143, 460, 483, 522, 598, 673, 773, 937
SapI GCTCTTC 1 cut(s) 536
SaqAI TTAA 1 cut(s) 1083
SatI GCNGC 2 cut(s) 239, 1026
Sau3AI GATC 7 cut(s) 55, 80, 313, 678, 711, 1002, 1180
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 5 cut(s) 22, 91, 356, 415, 1034
SduI GDGCHC 1 cut(s) 635
SfaNI GCATC 3 cut(s) 442, 1037, 1059
SfcI CTRYAG 3 cut(s) 756, 837, 1118
Sfr274I CTCGAG 1 cut(s) 782
SlaI CTCGAG 1 cut(s) 782
SmlI CTYRAG 3 cut(s) 242, 782, 1082
SmoI CTYRAG 3 cut(s) 242, 782, 1082
Sse9I AATT 4 cut(s) 765, 867, 1133, 1167
SsiI CCGC 5 cut(s) 107, 232, 250, 964, 1061
SspMI CTAG 1 cut(s) 924
StyD4I CCNGG 5 cut(s) 20, 89, 354, 413, 1032
TaaI ACNGT 2 cut(s) 587, 838
TaiI ACGT 1 cut(s) 674
TaqI TCGA 7 cut(s) 74, 309, 570, 681, 783, 957, 973
TaqII GACCGA 1 cut(s) 959
TasI AATT 4 cut(s) 765, 867, 1133, 1167
TatI WGTACW 4 cut(s) 142, 459, 597, 772
TfiI GAWTC 9 cut(s) 25, 295, 564, 617, 664, 954, 967, 975, 1139
Tru1I TTAA 1 cut(s) 1083
Tru9I TTAA 1 cut(s) 1083
TscAI CASTG 2 cut(s) 283, 735
TseFI GTSAC 5 cut(s) 50, 433, 472, 497, 829
TseI GCWGC 2 cut(s) 238, 1025
Tsp45I GTSAC 5 cut(s) 50, 433, 472, 497, 829
TspDTI ATGAA 4 cut(s) 352, 454, 535, 556
TspRI CASTG 2 cut(s) 283, 735
Tth111I GACNNNGTC 1 cut(s) 305
Vha464I CTTAAG 1 cut(s) 1082
XceI RCATGY 1 cut(s) 1201
XhoI CTCGAG 1 cut(s) 782
XspI CTAG 1 cut(s) 924
Zsp2I ATGCAT 1 cut(s) 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.