Prupe.3G215200_v2.0.a1

Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016901
Physical Location & Seq
Reverse (-)
21818840 .. 21819394
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G215200.1

Sequence Viewer

Length: 555 bp
ATGGCGTTGAACCCATTTTCAAGACCCACCAAACTCATGTCCTTTTCATCAATATTGCTTCTACTAGCCATGCTCATGCCTCTAGCCAAGGCTCAAAGTCCTAGAGAAACCACCATAGTGTTATACTTGCAAGACTTGGCATCTGGGCCAGATGCCACTGTTGTCCCAATCACCGGCATCCAGGGCAAGCCTCAATCTTTCACCTCATTTGGCACCATTTTTGCCGTTGACGATATCATCACAGAAACCCCGGATAAAGTATCAGCCCAAATCGGTCGAGCTCAAGGCATCCTAGTGGCCTCATCCTTGTCTGGCTCCAATGTGCACGTTTCAATGTCACTTGCATTCACCAGTGTGGAGTACAACGGTAGCAGCCTTGAGATACAAGGCATCAGCCGCCAGTTTGAGAGGTATAAAGAGGTCTCAGTGGTTTCAGGCACTGGATCATTCAGATATGCAAGGGGATATGCTACTCTTGAGACAGTTTTCTATGACAATAAGACATCCTACTCGATCATTCGATGCACCGTTAGGTTGCTTCCAAACAGTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

185

Amino Acids

19.95

Weight (kDa)

8.73

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016901)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g42910
prunus_persica Prupe.3G215200_v2.0.a1
pyrus_communis pycom17g09610
rosa_chinensis RchiOBHm_Chr2g0158831
rosa_laevigata RLG00000021117
rosa_multiflora Rmu_sc0002267.1_g000017 Rmu_sc0014404.1_g000001
rosa_roxburghii Rroxscaffold_2G00090960
rosa_rugosa Rorug02G0473000
rosa_samantha Rh2AG538800 Rh2BG551400 Rh2CG522100 Rh2DG561200
rosa_wichuraiana Rw2G044590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 1 cut(s) 397
AclWI GGATC 1 cut(s) 451
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 3 cut(s) 10, 21, 333
AjnI CCWGG 1 cut(s) 180
AleI CACNNNNGTG 2 cut(s) 116, 353
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw21I GWGCWC 2 cut(s) 283, 327
Alw26I GTCTC 2 cut(s) 427, 473
Alw44I GTGCAC 1 cut(s) 323
AlwI GGATC 1 cut(s) 451
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 2 cut(s) 146, 297
ApaLI GTGCAC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 3 cut(s) 163, 193, 340
BaeGI GKGCMC 1 cut(s) 327
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 283
Bbv12I GWGCWC 2 cut(s) 283, 327
BbvI GCAGC 1 cut(s) 384
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 182
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 427, 473
BfaI CTAG 4 cut(s) 65, 83, 102, 293
BisI GCNGC 2 cut(s) 373, 397
BlsI GCNGC 2 cut(s) 374, 398
Bme1390I CCNGG 2 cut(s) 182, 251
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 214, 316
BmrFI CCNGG 2 cut(s) 182, 251
BmsI GCATC 6 cut(s) 142, 149, 186, 297, 399, 512
BpuEI CTTGAG 3 cut(s) 267, 398, 497
BpuMI CCSGG 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 427
BsaJI CCNNGG 3 cut(s) 87, 181, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 3 cut(s) 351, 400, 445
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 3 cut(s) 87, 181, 249
BseGI GGATG 4 cut(s) 177, 288, 302, 503
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 3 cut(s) 351, 400, 445
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 1 cut(s) 384
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 2 cut(s) 148, 299
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 283, 327
BsiSI CCGG 2 cut(s) 174, 251
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 2 cut(s) 427, 473
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 2 cut(s) 148, 299
Bso31I GGTCTC 1 cut(s) 427
Bsp1286I GDGCHC 2 cut(s) 283, 327
Bsp143I GATC 2 cut(s) 443, 513
BspACI CCGC 1 cut(s) 397
BspANI GGCC 2 cut(s) 148, 299
BspCNI CTCAG 1 cut(s) 437
BspLI GGNNCC 2 cut(s) 214, 316
BspPI GGATC 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 3 cut(s) 351, 400, 445
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 3 cut(s) 87, 181, 249
BssMI GATC 2 cut(s) 443, 513
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 5 cut(s) 160, 368, 484, 529, 548
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 424
BstF5I GGATG 4 cut(s) 177, 288, 302, 503
BstKTI GATC 2 cut(s) 446, 516
BstMAI GTCTC 2 cut(s) 427, 473
BstMBI GATC 2 cut(s) 443, 513
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 183, 396
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 180, 249
BstSLI GKGCMC 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 384
BsuRI GGCC 2 cut(s) 148, 299
BtsCI GGATG 4 cut(s) 177, 288, 302, 503
BtsIMutI CAGTG 4 cut(s) 156, 358, 432, 438
Cac8I GCNNGC 1 cut(s) 188
CaiI CAGNNNCTG 1 cut(s) 440
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 361
CviAII CATG 3 cut(s) 37, 70, 76
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 1 cut(s) 424
DpnI GATC 2 cut(s) 445, 515
DpnII GATC 2 cut(s) 443, 513
Ecl136II GAGCTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 180
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 40, 73, 79
FaiI YATR 9 cut(s) 38, 71, 77, 116, 124, 414, 456, 468, 492
FaqI GGGAC 1 cut(s) 149
FatI CATG 3 cut(s) 36, 69, 75
Fnu4HI GCNGC 2 cut(s) 373, 397
FokI GGATG 4 cut(s) 164, 275, 289, 490
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 2 cut(s) 373, 397
FspBI CTAG 4 cut(s) 65, 83, 102, 293
GluI GCNGC 2 cut(s) 373, 397
HaeIII GGCC 2 cut(s) 148, 299
HapII CCGG 2 cut(s) 174, 251
Hin1II CATG 3 cut(s) 40, 73, 79
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HpaII CCGG 2 cut(s) 174, 251
HphI GGTGA 3 cut(s) 163, 193, 340
Hpy166II GTNNAC 2 cut(s) 229, 325
Hpy188I TCNGA 1 cut(s) 452
Hpy188III TCNNGA 2 cut(s) 21, 476
Hpy8I GTNNAC 2 cut(s) 229, 325
HpyCH4III ACNGT 5 cut(s) 160, 368, 484, 529, 548
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 5 cut(s) 130, 325, 344, 458, 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 396
HpyF3I CTNAG 1 cut(s) 424
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 3 cut(s) 40, 73, 79
Kzo9I GATC 2 cut(s) 443, 513
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 6 cut(s) 142, 149, 186, 297, 399, 512
MaeI CTAG 4 cut(s) 65, 83, 102, 293
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 336
MalI GATC 2 cut(s) 445, 515
MboI GATC 2 cut(s) 443, 513
MhlI GDGCHC 2 cut(s) 283, 327
MnlI CCTC 6 cut(s) 90, 201, 214, 310, 402, 412
MslI CAYNNNNRTG 4 cut(s) 74, 116, 293, 353
MspI CCGG 2 cut(s) 174, 251
MspR9I CCNGG 2 cut(s) 182, 251
Mva1269I GAATGC 1 cut(s) 344
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 183, 396
NciI CCSGG 1 cut(s) 251
NdeII GATC 2 cut(s) 443, 513
NlaIII CATG 3 cut(s) 40, 73, 79
NlaIV GGNNCC 2 cut(s) 214, 316
NmuCI GTSAC 1 cut(s) 336
OliI CACNNNNGTG 2 cut(s) 116, 353
PctI GAATGC 1 cut(s) 344
PkrI GCNGC 2 cut(s) 374, 398
Psp124BI GAGCTC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 214, 316
PspPI GGNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 4 cut(s) 74, 116, 293, 353
SacI GAGCTC 1 cut(s) 283
SatI GCNGC 2 cut(s) 373, 397
Sau3AI GATC 2 cut(s) 443, 513
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 182, 251
SduI GDGCHC 2 cut(s) 283, 327
SetI ASST 6 cut(s) 206, 283, 330, 413, 423, 536
SfaNI GCATC 6 cut(s) 142, 149, 186, 297, 399, 512
SmiMI CAYNNNNRTG 4 cut(s) 74, 116, 293, 353
SmlI CTYRAG 3 cut(s) 282, 377, 476
SmoI CTYRAG 3 cut(s) 282, 377, 476
SsiI CCGC 1 cut(s) 397
SspI AATATT 1 cut(s) 54
SspMI CTAG 4 cut(s) 65, 83, 102, 293
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 2 cut(s) 180, 249
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 5 cut(s) 160, 368, 484, 529, 548
TaiI ACGT 1 cut(s) 330
TaqI TCGA 3 cut(s) 277, 512, 520
TaqII GACCGA 1 cut(s) 263
TatI WGTACW 1 cut(s) 360
TauI GCSGC 1 cut(s) 399
TscAI CASTG 4 cut(s) 163, 358, 432, 445
TseFI GTSAC 1 cut(s) 336
TseI GCWGC 1 cut(s) 372
Tsp45I GTSAC 1 cut(s) 336
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 4 cut(s) 163, 358, 432, 445
VneI GTGCAC 1 cut(s) 323
XspI CTAG 4 cut(s) 65, 83, 102, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.