Prupe.3G235900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0018064
Physical Location & Seq
Forward (+)
23097864 .. 23098640
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G235900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 390 bp
ATGAACGGTCTAGTCCGCGGCGCCACCGCCAGTTTGAGCCGGCGGTTCGACGGTTATGAGCCGCTGGATCGAGTGATGAGAAGTGCAAGCAGGCGTGATGTTCGGCTGAGGAGATCAATGTCGTTTAAGCGTGAGAAAGTGGCACATGTTCCATTGAGAAATAACGAGGACAGAGCCAAGCAAAAGCGGCAGATATTTCTCAACTCCTACAAGTTTGAGTCACCCAAAAAATCTCAACGCTCAAGGTGTATGAAGCTCAACAAGGTGGCTTGTAAGGTTAAGACAGTTGTGGGGAAGCTAGTGTCGTCGTTCTTCCGAATTGGAGGTTTCCGATCTTGTAATTGTCGTTTGGCCATCCATGCCTCCTCCCCAAGACCTCGTAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.97

Weight (kDa)

11.69

Isoelectric Point (pI)

80.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45100
malus_domestica MD09G1089500.v1.1
prunus_persica Prupe.3G235900_v2.0.a1
rosa_laevigata RLG00000021349
rosa_multiflora Rmu_sc0004206.1_g000013
rosa_roxburghii Rroxscaffold_2G00087880
rosa_rugosa Rorug02G0498200
rosa_samantha Rh2AG564100 Rh2BG576700 Rh2CG546700 Rh2DG586500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccII CGCG 1 cut(s) 18
AciI CCGC 6 cut(s) 16, 18, 27, 43, 62, 187
AclWI GGATC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 21
AflIII ACRYGT 1 cut(s) 145
AluBI AGCT 2 cut(s) 256, 298
AluI AGCT 2 cut(s) 256, 298
AlwI GGATC 1 cut(s) 75
AoxI GGCC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 213
BalI TGGCCA 1 cut(s) 353
BanI GGYRCC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 362
BfaI CTAG 2 cut(s) 11, 299
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 3 cut(s) 19, 62, 188
BlsI GCNGC 3 cut(s) 20, 63, 189
BmiI GGNNCC 1 cut(s) 22
Bpu10I CCTNAGC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 16
Bse118I RCCGGY 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 30
BseRI GAGGAG 2 cut(s) 124, 355
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 40
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 3 cut(s) 67, 113, 332
BspACI CCGC 6 cut(s) 16, 18, 27, 43, 62, 187
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 39
BsrI ACTGG 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 3 cut(s) 67, 113, 332
BssNI GRCGYC 1 cut(s) 21
Bst4CI ACNGT 3 cut(s) 8, 53, 286
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 3 cut(s) 41, 88, 92
BstDEI CTNAG 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 354
BstFNI CGCG 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 3 cut(s) 70, 116, 335
BstMBI GATC 3 cut(s) 67, 113, 332
BstMWI GCNNNNNNNGC 2 cut(s) 187, 359
BstNSI RCATGY 1 cut(s) 149
BstUI CGCG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 354
Cac8I GCNNGC 3 cut(s) 41, 88, 92
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 1 cut(s) 39
Cfr42I CCGCGG 1 cut(s) 19
CviAII CATG 2 cut(s) 146, 359
CviJI RGCY 8 cut(s) 39, 61, 106, 176, 256, 269, 298, 353
CviKI_1 RGCY 8 cut(s) 39, 61, 106, 176, 256, 269, 298, 353
DdeI CTNAG 1 cut(s) 107
DinI GGCGCC 1 cut(s) 22
DpnI GATC 3 cut(s) 69, 115, 334
DpnII GATC 3 cut(s) 67, 113, 332
EaeI YGGCCR 1 cut(s) 351
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
FaeI CATG 2 cut(s) 149, 362
FaiI YATR 4 cut(s) 57, 147, 251, 360
FatI CATG 2 cut(s) 145, 358
Fnu4HI GCNGC 3 cut(s) 19, 62, 188
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 3 cut(s) 19, 62, 188
FspBI CTAG 2 cut(s) 11, 299
GlaI GCGC 1 cut(s) 22
GluI GCNGC 3 cut(s) 19, 62, 188
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 149, 362
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 317, 332
Hpy99I CGWCG 2 cut(s) 53, 310
HpyCH4III ACNGT 3 cut(s) 8, 53, 286
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 359
HpyF3I CTNAG 1 cut(s) 107
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 149, 362
HspAI GCGC 1 cut(s) 21
KasI GGCGCC 1 cut(s) 20
KroI GCCGGC 1 cut(s) 39
KroNI GCCGGC 1 cut(s) 41
KspI CCGCGG 1 cut(s) 19
Kzo9I GATC 3 cut(s) 67, 113, 332
LpnPI CCDG 4 cut(s) 43, 50, 53, 76
MaeI CTAG 2 cut(s) 11, 299
MaeIII GTNAC 1 cut(s) 219
MalI GATC 3 cut(s) 69, 115, 334
MboI GATC 3 cut(s) 67, 113, 332
MboII GAAGA 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 3 cut(s) 318, 340, 385
MluNI TGGCCA 1 cut(s) 353
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 6 cut(s) 102, 160, 317, 373, 376, 387
Mox20I TGGCCA 1 cut(s) 353
MroNI GCCGGC 1 cut(s) 39
MscI TGGCCA 1 cut(s) 353
MseI TTAA 2 cut(s) 126, 279
Msp20I TGGCCA 1 cut(s) 353
MspA1I CMGCKG 2 cut(s) 18, 64
MspI CCGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 187, 359
NaeI GCCGGC 1 cut(s) 41
NarI GGCGCC 1 cut(s) 21
NdeII GATC 3 cut(s) 67, 113, 332
NgoMIV GCCGGC 1 cut(s) 39
NlaIII CATG 2 cut(s) 149, 362
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 219
NspI RCATGY 1 cut(s) 149
PciI ACATGT 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 41
PkrI GCNGC 3 cut(s) 20, 63, 189
PleI GAGTC 1 cut(s) 226
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 226
PscI ACATGT 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 22
SacII CCGCGG 1 cut(s) 19
SaqAI TTAA 2 cut(s) 126, 279
SatI GCNGC 3 cut(s) 19, 62, 188
Sau3AI GATC 3 cut(s) 67, 113, 332
SchI GAGTC 1 cut(s) 227
SetI ASST 7 cut(s) 248, 258, 267, 279, 300, 328, 379
SfoI GGCGCC 1 cut(s) 22
Sfr303I CCGCGG 1 cut(s) 19
SgrBI CCGCGG 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 3 cut(s) 318, 340, 385
SsiI CCGC 6 cut(s) 16, 18, 27, 43, 62, 187
SspDI GGCGCC 1 cut(s) 20
SspMI CTAG 2 cut(s) 11, 299
TaaI ACNGT 3 cut(s) 8, 53, 286
TaqI TCGA 2 cut(s) 48, 70
TasI AATT 3 cut(s) 318, 340, 385
TauI GCSGC 3 cut(s) 21, 64, 190
Tru1I TTAA 2 cut(s) 126, 279
Tru9I TTAA 2 cut(s) 126, 279
TseFI GTSAC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 17, 266
XceI RCATGY 1 cut(s) 149
XspI CTAG 2 cut(s) 11, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.