Prupe.4G017400_v2.0.a1

Pectate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0009756
Physical Location & Seq
Forward (+)
813958 .. 815356
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G017400.1

Sequence Viewer

Length: 1158 bp
ATGGCCTCCTTATCCCCTCTCATATTGCTCTCATGTTTTCTAACTTACTATATTGCTCCAACATCTCAAGCCTATTCACCGGGCTACTACACCACCACCCCAAAAACCACCATGAACGTAGTAGACTCATGTTGGCGCTCCAAGTCCAATTGGGCCATTAACCGCCGCGCTTTGGCCAACTGTGCAGTAGGTTTTGGTCAAGACGCGGTGGGAGGAAAATATGGGAGTACTTACGTGGTCACTACCTCATACGATGACCCCATAAACCCTAAACCTGGCTCACTCCGTTACGGGGTGATCCAAACGCAGCCACTGTGGATCGTCTTTGCCAAGGACATGGTGATCACACTAAAAAATGAGCTCATTATGAACAGCTTTAAAACCATAGATGGTCGAGGAGCTAAAGTGGAAATTGCCTACGGGCCATGCATAACGGTGCAGGGAGTTAGCCATGTGATTATACATGGAATAAGTATTCATGATTGTAAGCCAGGGAAGGGTGGAAATGTTAGGAGCACCCCTACACATGTAGGGCACCGGCGAGGATGCGATGGAGATGCCATTAGTATCTTTGCTTCTTCGCATGTTTGGGTTGACCATTGCTTCCTAGCACGTAGCAGCGACGGCCTCATTGATGTCACCCATGCTTCCACTGCCGTCACCATCACTAACAACTATTTCTCTCAGCATGATAAGGTGATGCTGCTTGGACACAATGATAATTTTAGTGCAGATAAAGGTATGAAAGTCACAATAGCCTTTAACCGTTTTGGGGCTGGCCTGATTGAAAGGATGCCACGGGTGAGGTTTGGGTATGCTCATGTGGCCAACAATAGATATGACGAGTGGAAGATGTACGCGGTTGGAGGCAGCGCTAACCCGACCATTTTCAGTGAAGGGAACTACTTCATAGCGCCTGAAACTGCTTACGCAAAACAGGTTACAAAGAGAGAGTCTGGAGGACGTTGGAATAATTGGAAATGGAGATCTTCCAAGGATATGTTCAAAAATGGTGCTTTTTTTGTTCAATCTGGATATGGAAGCTGTTACCCACTTTACTCTAAAACTCAGTCGTTTAAGGTCCTAGATGGATCCATGGTTCCGGCTTTAACTTCAAGTGCAGGTCCTCTGCGCTGCTTTGTTGGTAAAGCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko02024 map00040 map02024
Pfam Domains
Protein Families
Pec_lyase_C

Protein Analysis

386

Amino Acids

42.29

Weight (kDa)

9.33

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009756)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11920 AT1G30350 AT4G22080 AT4G22090
fragaria_vesca FvH4_3g01680
malus_domestica MD00G1202500.v1.1 MD05G1350000.v1.1 MD10G1324800.v1.1
prunus_persica Prupe.4G017400_v2.0.a1 Prupe.4G020600_v2.0.a1
pyrus_communis pycom10g27510
rosa_chinensis RchiOBHm_Chr5g0002531
rosa_laevigata RLG00000031037
rosa_multiflora Rmu_sc0010731.1_g000004
rosa_roxburghii Rroxscaffold_1G00073370
rosa_rugosa Rorug04G0396700
rosa_samantha Rh5AG020100 Rh5BG022800 Rh5CG022100 Rh5DG021200
rosa_wichuraiana Rw5G001850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1112
AccB1I GGYRCC 1 cut(s) 534
AccI GTMKAC 1 cut(s) 123
AccII CGCG 3 cut(s) 168, 206, 860
AciI CCGC 4 cut(s) 163, 166, 206, 860
AclWI GGATC 4 cut(s) 292, 326, 1086, 1099
AcoI YGGCCR 2 cut(s) 174, 825
AfaI GTAC 2 cut(s) 229, 857
AfeI AGCGCT 1 cut(s) 874
AfiI CCNNNNNNNGG 5 cut(s) 172, 275, 292, 497, 772
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 4 cut(s) 788, 1006, 1028, 1116
AjnI CCWGG 2 cut(s) 274, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 986, 1018
AloI GAACNNNNNNTCC 2 cut(s) 1083, 1115
AluBI AGCT 4 cut(s) 361, 375, 401, 1044
AluI AGCT 4 cut(s) 361, 375, 401, 1044
Alw21I GWGCWC 2 cut(s) 363, 518
AlwI GGATC 4 cut(s) 292, 326, 1086, 1099
AlwNI CAGNNNCTG 1 cut(s) 313
Aor51HI AGCGCT 1 cut(s) 874
AoxI GGCC 7 cut(s) 3, 153, 174, 422, 625, 778, 825
ApeKI GCWGC 5 cut(s) 307, 618, 703, 870, 1134
ArsI GACNNNNNNTTYG 2 cut(s) 938, 970
Asp700I GAANNNNTTC 1 cut(s) 905
AspLEI GCGC 5 cut(s) 138, 170, 875, 916, 1134
AspS9I GGNCC 4 cut(s) 153, 422, 1081, 1124
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 7 cut(s) 69, 307, 352, 631, 652, 709, 814
AvaII GGWCC 2 cut(s) 1081, 1124
BaeGI GKGCMC 1 cut(s) 537
BalI TGGCCA 2 cut(s) 176, 827
BamHI GGATCC 1 cut(s) 1091
BanI GGYRCC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 363
BarI GAAGNNNNNNTAC 2 cut(s) 559, 591
Bbv12I GWGCWC 2 cut(s) 363, 518
BbvI GCAGC 5 cut(s) 319, 630, 690, 882, 1121
BccI CCATC 4 cut(s) 383, 545, 671, 1082
BceAI ACGGC 2 cut(s) 640, 641
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 2 cut(s) 276, 492
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 1 cut(s) 81
BfaI CTAG 2 cut(s) 608, 1085
BfoI RGCGCY 3 cut(s) 139, 876, 917
BfuAI ACCTGC 1 cut(s) 1112
BglII AGATCT 1 cut(s) 986
BisI GCNGC 6 cut(s) 166, 308, 619, 704, 871, 1135
BlsI GCNGC 6 cut(s) 167, 309, 620, 705, 872, 1136
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 3 cut(s) 81, 276, 492
Bme18I GGWCC 2 cut(s) 1081, 1124
BmgT120I GGNCC 4 cut(s) 153, 422, 1081, 1124
BmiI GGNNCC 3 cut(s) 536, 1093, 1101
BmrFI CCNGG 3 cut(s) 81, 276, 492
BmsI GCATC 4 cut(s) 536, 547, 690, 783
BpmI CTGGAG 1 cut(s) 978
BpuEI CTTGAG 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 81
BsaAI YACGTR 2 cut(s) 235, 614
BsaJI CCNNGG 5 cut(s) 330, 491, 797, 993, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 275, 292, 497, 772
Bse118I RCCGGY 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 598
BseBI CCWGG 2 cut(s) 276, 492
BseDI CCNNGG 5 cut(s) 330, 491, 797, 993, 1095
BseGI GGATG 2 cut(s) 551, 798
BseLI CCNNNNNNNGG 5 cut(s) 172, 275, 292, 497, 772
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 2 cut(s) 698, 1082
BseRI GAGGAG 1 cut(s) 411
BseSI GKGCMC 1 cut(s) 537
BseXI GCAGC 5 cut(s) 319, 630, 690, 882, 1121
BsgI GTGCAG 4 cut(s) 204, 458, 750, 1140
Bsh1236I CGCG 3 cut(s) 168, 206, 860
BshFI GGCC 7 cut(s) 5, 155, 176, 424, 627, 780, 827
BshNI GGYRCC 1 cut(s) 534
BsiHKAI GWGCWC 2 cut(s) 363, 518
BsiSI CCGG 3 cut(s) 80, 538, 1103
BslI CCNNNNNNNGG 5 cut(s) 172, 275, 292, 497, 772
BsnI GGCC 7 cut(s) 5, 155, 176, 424, 627, 780, 827
Bsp1286I GDGCHC 3 cut(s) 363, 518, 537
Bsp143I GATC 5 cut(s) 297, 318, 342, 986, 1091
Bsp19I CCATGG 1 cut(s) 1095
BspACI CCGC 4 cut(s) 163, 166, 206, 860
BspANI GGCC 7 cut(s) 5, 155, 176, 424, 627, 780, 827
BspCNI CTCAG 2 cut(s) 697, 1081
BspFNI CGCG 3 cut(s) 168, 206, 860
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 536, 1093, 1101
BspMI ACCTGC 1 cut(s) 1112
BspPI GGATC 4 cut(s) 292, 326, 1086, 1099
BspT107I GGYRCC 1 cut(s) 534
BsrDI GCAATG 1 cut(s) 598
BsrFI RCCGGY 1 cut(s) 537
BssAI RCCGGY 1 cut(s) 537
BssECI CCNNGG 5 cut(s) 330, 491, 797, 993, 1095
BssMI GATC 5 cut(s) 297, 318, 342, 986, 1091
BssT1I CCWWGG 3 cut(s) 330, 993, 1095
Bst2UI CCWGG 2 cut(s) 276, 492
Bst4CI ACNGT 4 cut(s) 182, 315, 436, 767
BstBAI YACGTR 2 cut(s) 235, 614
BstC8I GCNNGC 1 cut(s) 778
BstDEI CTNAG 2 cut(s) 684, 1068
BstDSI CCRYGG 2 cut(s) 797, 1095
BstF5I GGATG 2 cut(s) 551, 798
BstFNI CGCG 3 cut(s) 168, 206, 860
BstH2I RGCGCY 3 cut(s) 139, 876, 917
BstHHI GCGC 5 cut(s) 138, 170, 875, 916, 1134
BstKTI GATC 5 cut(s) 300, 321, 345, 989, 1094
BstMBI GATC 5 cut(s) 297, 318, 342, 986, 1091
BstMWI GCNNNNNNNGC 4 cut(s) 182, 624, 653, 824
BstNI CCWGG 2 cut(s) 276, 492
BstNSI RCATGY 3 cut(s) 530, 587, 1155
BstSCI CCNGG 3 cut(s) 79, 274, 490
BstSLI GKGCMC 1 cut(s) 537
BstUI CGCG 3 cut(s) 168, 206, 860
BstV1I GCAGC 5 cut(s) 319, 630, 690, 882, 1121
BstX2I RGATCY 2 cut(s) 986, 1091
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 2 cut(s) 986, 1091
BsuRI GGCC 7 cut(s) 5, 155, 176, 424, 627, 780, 827
BtgI CCRYGG 2 cut(s) 797, 1095
BtgZI GCGATG 1 cut(s) 564
BtsCI GGATG 2 cut(s) 551, 798
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 3 cut(s) 311, 651, 898
BveI ACCTGC 1 cut(s) 1112
Cac8I GCNNGC 1 cut(s) 778
CaiI CAGNNNCTG 1 cut(s) 313
CciI TCATGA 1 cut(s) 478
CfoI GCGC 5 cut(s) 138, 170, 875, 916, 1134
Cfr10I RCCGGY 1 cut(s) 537
Cfr13I GGNCC 4 cut(s) 153, 422, 1081, 1124
CseI GACGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 228, 856
CviQI GTAC 2 cut(s) 228, 856
DdeI CTNAG 2 cut(s) 684, 1068
DpnI GATC 5 cut(s) 299, 320, 344, 988, 1093
DpnII GATC 5 cut(s) 297, 318, 342, 986, 1091
DraI TTTAAA 1 cut(s) 379
EaeI YGGCCR 2 cut(s) 174, 825
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 3 cut(s) 330, 993, 1095
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 1081, 1124
Eco47III AGCGCT 1 cut(s) 874
Eco53kI GAGCTC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 361
EcoO109I RGGNCCY 2 cut(s) 1081, 1124
EcoRII CCWGG 2 cut(s) 274, 490
EcoT14I CCWWGG 3 cut(s) 330, 993, 1095
EcoT22I ATGCAT 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 3 cut(s) 330, 993, 1095
FbaI TGATCA 1 cut(s) 342
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 6 cut(s) 166, 308, 619, 704, 871, 1135
FokI GGATG 2 cut(s) 558, 805
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 6 cut(s) 166, 308, 619, 704, 871, 1135
FspBI CTAG 2 cut(s) 608, 1085
GlaI GCGC 5 cut(s) 137, 169, 874, 915, 1133
GluI GCNGC 6 cut(s) 166, 308, 619, 704, 871, 1135
GsuI CTGGAG 1 cut(s) 978
HaeII RGCGCY 3 cut(s) 139, 876, 917
HaeIII GGCC 7 cut(s) 5, 155, 176, 424, 627, 780, 827
HapII CCGG 3 cut(s) 80, 538, 1103
HgaI GACGC 1 cut(s) 212
HhaI GCGC 5 cut(s) 138, 170, 875, 916, 1134
Hin6I GCGC 5 cut(s) 136, 168, 873, 914, 1132
HinP1I GCGC 5 cut(s) 136, 168, 873, 914, 1132
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HinfI GANTC 2 cut(s) 125, 953
HpaII CCGG 3 cut(s) 80, 538, 1103
HphI GGTGA 7 cut(s) 69, 307, 352, 631, 652, 709, 814
Hpy166II GTNNAC 2 cut(s) 124, 595
Hpy188III TCNNGA 4 cut(s) 200, 479, 957, 1032
Hpy8I GTNNAC 2 cut(s) 124, 595
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 2 cut(s) 490, 890
HpyCH4III ACNGT 4 cut(s) 182, 315, 436, 767
HpyCH4IV ACGT 4 cut(s) 117, 234, 613, 964
HpyCH4V TGCA 5 cut(s) 185, 429, 439, 731, 1121
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 624, 653, 824
HpyF3I CTNAG 2 cut(s) 684, 1068
HpySE526I ACGT 4 cut(s) 117, 234, 613, 964
HspAI GCGC 5 cut(s) 136, 168, 873, 914, 1132
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 5 cut(s) 297, 318, 342, 986, 1091
LmnI GCTCC 4 cut(s) 61, 143, 398, 513
Lsp1109I GCAGC 5 cut(s) 319, 630, 690, 882, 1121
LweI GCATC 4 cut(s) 536, 547, 690, 783
MaeI CTAG 2 cut(s) 608, 1085
MaeII ACGT 4 cut(s) 117, 234, 613, 964
MaeIII GTNAC 7 cut(s) 238, 287, 637, 658, 748, 940, 1046
MalI GATC 5 cut(s) 299, 320, 344, 988, 1093
MboI GATC 5 cut(s) 297, 318, 342, 986, 1091
MboII GAAGA 3 cut(s) 570, 862, 981
MfeI CAATTG 1 cut(s) 148
MflI RGATCY 2 cut(s) 986, 1091
MhlI GDGCHC 3 cut(s) 363, 518, 537
MlsI TGGCCA 2 cut(s) 176, 827
MluCI AATT 4 cut(s) 148, 411, 721, 973
MluNI TGGCCA 2 cut(s) 176, 827
MlyI GAGTC 2 cut(s) 119, 962
MmeI TCCRAC 3 cut(s) 83, 844, 947
Mox20I TGGCCA 2 cut(s) 176, 827
Mph1103I ATGCAT 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 905
MscI TGGCCA 2 cut(s) 176, 827
MseI TTAA 6 cut(s) 159, 378, 762, 1077, 1109, 1156
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 2 cut(s) 176, 827
MspI CCGG 3 cut(s) 80, 538, 1103
MspR9I CCNGG 3 cut(s) 81, 276, 492
MunI CAATTG 1 cut(s) 148
MvaI CCWGG 2 cut(s) 276, 492
MvnI CGCG 3 cut(s) 168, 206, 860
MwoI GCNNNNNNNGC 4 cut(s) 182, 624, 653, 824
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 1095
NdeII GATC 5 cut(s) 297, 318, 342, 986, 1091
NlaIV GGNNCC 3 cut(s) 536, 1093, 1101
NmuCI GTSAC 4 cut(s) 238, 637, 658, 748
NsiI ATGCAT 1 cut(s) 431
NspI RCATGY 3 cut(s) 530, 587, 1155
PagI TCATGA 1 cut(s) 478
PciI ACATGT 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 905
PkrI GCNGC 6 cut(s) 167, 309, 620, 705, 872, 1136
PleI GAGTC 2 cut(s) 119, 961
PpsI GAGTC 2 cut(s) 119, 961
Ppu21I YACGTR 2 cut(s) 235, 614
PpuMI RGGWCCY 2 cut(s) 1081, 1124
PscI ACATGT 1 cut(s) 526
Psp124BI GAGCTC 1 cut(s) 363
Psp5II RGGWCCY 2 cut(s) 1081, 1124
Psp6I CCWGG 2 cut(s) 274, 490
PspGI CCWGG 2 cut(s) 274, 490
PspN4I GGNNCC 3 cut(s) 536, 1093, 1101
PspPI GGNCC 4 cut(s) 153, 422, 1081, 1124
PspPPI RGGWCCY 2 cut(s) 1081, 1124
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 2 cut(s) 986, 1091
RsaI GTAC 2 cut(s) 229, 857
RsaNI GTAC 2 cut(s) 228, 856
RseI CAYNNNNRTG 1 cut(s) 434
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 6 cut(s) 159, 378, 762, 1077, 1109, 1156
SatI GCNGC 6 cut(s) 166, 308, 619, 704, 871, 1135
Sau3AI GATC 5 cut(s) 297, 318, 342, 986, 1091
Sau96I GGNCC 4 cut(s) 153, 422, 1081, 1124
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 2 cut(s) 119, 962
ScrFI CCNGG 3 cut(s) 81, 276, 492
SduI GDGCHC 3 cut(s) 363, 518, 537
SfaNI GCATC 4 cut(s) 536, 547, 690, 783
SgrAI CRCCGGYG 1 cut(s) 537
SinI GGWCC 2 cut(s) 1081, 1124
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 4 cut(s) 148, 411, 721, 973
SsiI CCGC 4 cut(s) 163, 166, 206, 860
SspMI CTAG 2 cut(s) 608, 1085
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 3 cut(s) 79, 274, 490
StyI CCWWGG 3 cut(s) 330, 993, 1095
TaaI ACNGT 4 cut(s) 182, 315, 436, 767
TaiI ACGT 4 cut(s) 120, 237, 616, 967
TaqI TCGA 1 cut(s) 394
TasI AATT 4 cut(s) 148, 411, 721, 973
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 168
Tru1I TTAA 6 cut(s) 159, 378, 762, 1077, 1109, 1156
Tru9I TTAA 6 cut(s) 159, 378, 762, 1077, 1109, 1156
TscAI CASTG 3 cut(s) 318, 658, 898
TseFI GTSAC 4 cut(s) 238, 637, 658, 748
TseI GCWGC 5 cut(s) 307, 618, 703, 870, 1134
Tsp45I GTSAC 4 cut(s) 238, 637, 658, 748
TspDTI ATGAA 5 cut(s) 128, 383, 467, 758, 898
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 3 cut(s) 318, 658, 898
VpaK11BI GGWCC 2 cut(s) 1081, 1124
XceI RCATGY 3 cut(s) 530, 587, 1155
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 2 cut(s) 608, 1085
ZrmI AGTACT 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.