Prupe.4G019800_v2.0.a1

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0008945
Physical Location & Seq
Reverse (-)
919621 .. 921856
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G019800.2

Sequence Viewer

Length: 360 bp
ATGGACAAAAACTCGTTCAAGCTTGACCATTCTCTAGAAAGGAGACAAGCAGAAGCTGGTCGTATCAGGGAGAAGTATCCTGACAGAATACCGGTGATTGTGGAGAAGGCTGCAAGGAGCAACATTCCTGACATTGACAAGAAAAAATACCTTGTCCCGGCTGATCTGAGTGTTGGACAGTTCGTTTATGTTGTCCGGAAGAGGATCAAGCTTGAGGCAGAAAAGGCTATATTCGTCTTTGTCAAGAATACTCTCCCTCCAACTGCTGCCGTGATGTCTACCATTTATGAGGAAAACAAGGATGAAGATGGATTTCTTTACTTGACCTACAGTGGAGAGAATGTCTTTGGTTCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

120

Amino Acids

13.68

Weight (kDa)

8.78

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 278
AccIII TCCGGA 1 cut(s) 195
AclWI GGATC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 157
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 1 cut(s) 19
AluBI AGCT 3 cut(s) 22, 56, 211
AluI AGCT 3 cut(s) 22, 56, 211
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 110, 266
AsiGI ACCGGT 1 cut(s) 91
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 106
BbvI GCAGC 2 cut(s) 97, 253
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 87
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 328
BfuI GTATCC 1 cut(s) 87
BisI GCNGC 2 cut(s) 111, 267
BlsI GCNGC 2 cut(s) 112, 268
Bme1390I CCNGG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 158
BsaWI WCCGGW 2 cut(s) 91, 195
BsaXI ACNNNNNCTCC 4 cut(s) 241, 271, 327, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 91
BseAI TCCGGA 1 cut(s) 195
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 97, 253
BshTI ACCGGT 1 cut(s) 91
BsiSI CCGG 3 cut(s) 92, 158, 196
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 140
Bsp13I TCCGGA 1 cut(s) 195
Bsp143I GATC 2 cut(s) 163, 204
BspCNI CTCAG 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssMI GATC 2 cut(s) 163, 204
Bst4CI ACNGT 2 cut(s) 180, 332
Bst6I CTCTTC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 2 cut(s) 166, 207
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 2 cut(s) 163, 204
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 97, 253
BsuI GTATCC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 337
CaiI CAGNNNCTG 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 91
CviJI RGCY 6 cut(s) 22, 56, 110, 161, 211, 227
CviKI_1 RGCY 6 cut(s) 22, 56, 110, 161, 211, 227
DdeI CTNAG 1 cut(s) 167
DpnI GATC 2 cut(s) 165, 206
DpnII GATC 2 cut(s) 163, 204
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
FaiI YATR 3 cut(s) 189, 230, 288
FaqI GGGAC 1 cut(s) 140
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 111, 267
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 111, 267
FspBI CTAG 1 cut(s) 35
GluI GCNGC 2 cut(s) 111, 267
HapII CCGG 3 cut(s) 92, 158, 196
HindIII AAGCTT 2 cut(s) 20, 209
HpaII CCGG 3 cut(s) 92, 158, 196
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 5 cut(s) 35, 80, 128, 196, 244
Hpy8I GTNNAC 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 180, 332
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 195
Kzo9I GATC 2 cut(s) 163, 204
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 7 cut(s) 42, 52, 93, 105, 141, 171, 209
Lsp1109I GCAGC 2 cut(s) 97, 253
MaeI CTAG 1 cut(s) 35
MalI GATC 2 cut(s) 165, 206
MboI GATC 2 cut(s) 163, 204
MboII GAAGA 2 cut(s) 211, 317
MmeI TCCRAC 2 cut(s) 154, 284
MnlI CCTC 4 cut(s) 195, 208, 267, 283
MroI TCCGGA 1 cut(s) 195
MseI TTAA 1 cut(s) 358
MspI CCGG 3 cut(s) 92, 158, 196
MspR9I CCNGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 158
NdeII GATC 2 cut(s) 163, 204
NlaIV GGNNCC 1 cut(s) 352
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 2 cut(s) 112, 268
PspN4I GGNNCC 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 2 cut(s) 111, 267
Sau3AI GATC 2 cut(s) 163, 204
ScrFI CCNGG 1 cut(s) 158
SetI ASST 5 cut(s) 24, 58, 153, 213, 329
SfcI CTRYAG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 180, 332
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 1 cut(s) 337
TseI GCWGC 2 cut(s) 110, 266
TspDTI ATGAA 1 cut(s) 318
TspRI CASTG 1 cut(s) 337
XbaI TCTAGA 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.