Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020722.1

Orthogroup ID

OG0008945

Physical Location & Seq

Genomic Coordinates Reverse (-)

9971 .. 11201

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020722.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgaattgttgtttgaaatttgcagaggaaggtcggacccaaagtgcagccatggccaatgacaaaagcttgttcaagaaagaacttgctctggagaggaggcaggcagaagcttgtcgaatcagggagaagtatccggagagagtaccggtgattgtggagaaggctgtaaagagtgacattcccgatattgacaagaagaaataccttgtccctgctgatttgactgttggacaatttgtttatgttgttcgcaagaggatcaagctcagtgcagacaaggctatatttatctttgtcaagaacactttaccttccactgctgcctcgatgtctgcaatttatgaagaaaacaaggatgaagatggattcctttacatgacctacagtggagagcaagtctttggatccctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

138

Amino Acids

15.65

Weight (kDa)

8.7

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04620 AT4G04620 AT4G04620 AT4G21980 AT4G21980
fragaria_vesca	FvH4_3g01980 FvH4_3g01980
malus_domestica	MD05G1347700.v1.1 MD10G1322100.v1.1
prunus_persica	Prupe.4G019800_v2.0.a1 Prupe.4G019800_v2.0.a1
pyrus_communis	pycom05g31530 pycom10g27260
rosa_chinensis	RchiOBHm_Chr5g0002891
rosa_laevigata	RLG00000031067
rosa_multiflora	Rmu_sc0020722.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072970
rosa_rugosa	Rorug04G0400400
rosa_samantha	Rh5AG023100 Rh5BG026000 Rh5DG024500
rosa_wichuraiana	Rw5G002180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	136
AclWI	GGATC	3 cut(s)	269, 402, 415
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	1 cut(s)	147
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	16, 76
AluBI	AGCT	3 cut(s)	69, 113, 268
AluI	AGCT	3 cut(s)	69, 113, 268
AlwI	GGATC	3 cut(s)	269, 402, 415
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	47, 323
ApoI	RAATTY	1 cut(s)	17
AsiGI	ACCGGT	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	59, 310
BccI	CCATC	1 cut(s)	359
BciVI	GTATCC	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	144
BisI	GCNGC	2 cut(s)	48, 324
BlsI	GCNGC	2 cut(s)	49, 325
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	38, 409
BpmI	CTGGAG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	2 cut(s)	136, 148
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bse118I	RCCGGY	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	59, 310
BsgI	GTGCAG	2 cut(s)	66, 294
BshFI	GGCC	1 cut(s)	56
BshTI	ACCGGT	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	137, 149
BslFI	GGGAC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	56
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	261, 407
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	38, 409
BspPI	GGATC	3 cut(s)	269, 402, 415
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	261, 407
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	229, 389
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	2 cut(s)	264, 410
BstMBI	GATC	2 cut(s)	261, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 281
BstSFI	CTRYAG	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	59, 310
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	3 cut(s)	277, 318, 394
Cac8I	GCNNGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	146
CspAI	ACCGGT	1 cut(s)	148
CviAII	CATG	2 cut(s)	52, 379
CviJI	RGCY	7 cut(s)	50, 56, 69, 113, 167, 268, 284
CviKI_1	RGCY	7 cut(s)	50, 56, 69, 113, 167, 268, 284
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	263, 409
DpnII	GATC	2 cut(s)	261, 407
EaeI	YGGCCR	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	55, 382
FaiI	YATR	5 cut(s)	53, 246, 287, 345, 380
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	51, 378
Fnu4HI	GCNGC	2 cut(s)	48, 324
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	2 cut(s)	48, 324
GluI	GCNGC	2 cut(s)	48, 324
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	2 cut(s)	137, 149
Hin1II	CATG	2 cut(s)	55, 382
HindIII	AAGCTT	2 cut(s)	67, 111
HinfI	GANTC	2 cut(s)	120, 369
HpaII	CCGG	2 cut(s)	137, 149
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	5 cut(s)	76, 92, 137, 185, 301
HpyAV	CCTTC	3 cut(s)	23, 157, 324
HpyCH4III	ACNGT	2 cut(s)	229, 389
HpyCH4V	TGCA	4 cut(s)	23, 47, 275, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 281
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	55, 382
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	261, 407
LpnPI	CCDG	6 cut(s)	77, 89, 109, 150, 162, 228
Lsp1109I	GCAGC	2 cut(s)	59, 310
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	263, 409
MboI	GATC	2 cut(s)	261, 407
MboII	GAAGA	3 cut(s)	211, 359, 374
MflI	RGATCY	1 cut(s)	407
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	4 cut(s)	4, 17, 236, 339
MluNI	TGGCCA	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	14, 211
MnlI	CCTC	5 cut(s)	19, 90, 93, 252, 337
Mox20I	TGGCCA	1 cut(s)	56
MroI	TCCGGA	1 cut(s)	136
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	415
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	2 cut(s)	137, 149
MwoI	GCNNNNNNNGC	2 cut(s)	53, 281
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	261, 407
NlaIII	CATG	2 cut(s)	55, 382
NlaIV	GGNNCC	2 cut(s)	38, 409
NmuCI	GTSAC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	120, 369
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	49, 325
PspN4I	GGNNCC	2 cut(s)	38, 409
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	2 cut(s)	48, 324
Sau3AI	GATC	2 cut(s)	261, 407
Sau96I	GGNCC	1 cut(s)	36
SetI	ASST	7 cut(s)	34, 71, 115, 210, 270, 316, 386
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	36
Sse9I	AATT	4 cut(s)	4, 17, 236, 339
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	229, 389
TaqI	TCGA	2 cut(s)	118, 329
TasI	AATT	4 cut(s)	4, 17, 236, 339
TfiI	GAWTC	2 cut(s)	120, 369
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TscAI	CASTG	3 cut(s)	277, 325, 394
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	47, 323
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	17, 360, 375
TspRI	CASTG	3 cut(s)	277, 325, 394
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.