Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008945

Physical Location & Seq

Genomic Coordinates Forward (+)

56557405 .. 56560634

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0400400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGCTATGGTTACCTCTAATATCCGAGACGCCTCCTTTTCTTCATACTTGAGTACTAATGAGGAAACCTTTCTATGTCAACTCGTTGATCAGAAGTCAAACCGAAACCTCAGTCCAGTCATCACAACCACCAGTCCTTCCAAAGGAGATCAGCATAAGCACTTGGGAACTAGAAAGAAGGAAGAAGAGGAAGAAATTGGAGTATTTGGAGCTGAAAAATACTTCAATGGAGTAATGGACGAGGACAGCTCAAAAAGTTCAAGCAGCACCTGTAGTTCAAGGAAGTTCCATGTTCATCAGCAGCGAGTCAATCTAGATCACATGAAGCTAAAGGTACAACAGCCCGGGACTCCAAGTGTTCGTTCCGAATCAAGTTGGAACAGCCAGAGTGCACTGCTTACAAGTGGTTCGAGAAATCCCAAAAGGACTAACAAGACAAGAAGCAACAAGGCACAGAGGAAAAGCTTCTTTGCAACTCTTGGTTGCTCATGTACTGATAAGAATTCTGTTGATGTTAATGAAGACCATGTTGGTGAAATCAGCTTCAAGCAGAATGGTGCTGCTGCCAACTCTGGAATCACAACACCCCACATTAAACAAAGTCTAGACCTTGTTGGTGAAGCTCTAGTCAAGATTAAACAAACCCCGGATTCATGGGTGAAGGAGGAGACATTGATGAACAACGAAAAGATGGATAAGTTGGGAACTGGATTGAGCAGAGAAAACTGCTTTACTTTCCCAGCTTCAAAATCCGGGCAGGTGAGTAACTTGCCTATCAAGATTCCTACCTTTCAAAAAATAGAAGATGAGAAACTGAGGAAGTCTATAGAGGTGTTTGGTTCTCCCGTGTTAGAAAAAAGGAAAAAGGCTTTAGGCCTTGAGAAAAGGCTAACAATGCTGTCTTGGGATGCCGAGTTTCCTGCAGCAAAATCTGGTGGAACCTACACTCATGAGTCAGACAGTGATGCAAGTTCAGACCTGTTTGAGATTGAGAGCCTCACAGGCAAGAACAACCCTTTTCTTGCAAGGCAAGCATCAGATGGTTGTGCCACCCCTACAACATGTTACGCGCCTAGTGAGGCAAGCATAGAGTGGAGTGTGGTCACTGCCAGTGCTGCAGATTTCAGCTCTGCCATGTCAGATTGTGAAGACCTTGTCAGGCCAAGTCCAACCACCACCACAAGTGTCAAAGAAGCTAGTATGAACAAAGAGATGGTGCCAATTAGGCACCGTCCAACTGTTGATCTGTTAGGTTGCAAGAGTCAAAAAGCTGTGAAAGTGGCGACAAATGCGCACAGACCATACAACCAGAAGACCATTATTGACCCAAAGATGATGCCTCGCAAGCCGGAAATGCCATTCATGCCATCAACAAGGTTTCAAGCTGAGACAACCTCTAAGTTGACAGGTTTTGACTCCAGAGTACAAGGGCAACATGCACTTGCACCACGGTCGCTCCCTCGTGCACATTCACCACATGCTTCTCATCTTCTGTTCATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

501

Amino Acids

55.26

Weight (kDa)

8.94

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04620 AT4G04620 AT4G04620 AT4G21980 AT4G21980
fragaria_vesca	FvH4_3g01980 FvH4_3g01980
malus_domestica	MD05G1347700.v1.1 MD10G1322100.v1.1
prunus_persica	Prupe.4G019800_v2.0.a1 Prupe.4G019800_v2.0.a1
pyrus_communis	pycom05g31530 pycom10g27260
rosa_chinensis	RchiOBHm_Chr5g0002891
rosa_laevigata	RLG00000031067
rosa_multiflora	Rmu_sc0020722.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072970
rosa_rugosa	Rorug04G0400400
rosa_samantha	Rh5AG023100 Rh5BG026000 Rh5DG024500
rosa_wichuraiana	Rw5G002180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	748
Acc16I	TGCGCA	1 cut(s)	1293
Acc36I	ACCTGC	1 cut(s)	748
AccB1I	GGYRCC	2 cut(s)	1216, 1227
AccII	CGCG	1 cut(s)	1070
AcsI	RAATTY	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	4 cut(s)	55, 336, 493, 1425
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	1061
AgsI	TTSAA	7 cut(s)	226, 261, 279, 547, 747, 794, 1382
AjuI	GAANNNNNNNTTGG	4 cut(s)	346, 378, 513, 545
Alw21I	GWGCWC	2 cut(s)	394, 1468
Alw26I	GTCTC	3 cut(s)	21, 662, 1382
Alw44I	GTGCAC	2 cut(s)	390, 1464
AlwNI	CAGNNNCTG	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	874, 1160
ApaLI	GTGCAC	2 cut(s)	390, 1464
ApeKI	GCWGC	6 cut(s)	264, 301, 560, 563, 923, 1115
ApoI	RAATTY	1 cut(s)	502
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
Asp700I	GAANNNNTTC	2 cut(s)	69, 464
AspLEI	GCGC	2 cut(s)	1072, 1294
AsuC2I	CCSGG	4 cut(s)	345, 346, 647, 754
AsuHPI	GGTGA	5 cut(s)	545, 629, 670, 772, 1464
AvaI	CYCGRG	1 cut(s)	344
BaeGI	GKGCMC	2 cut(s)	394, 1468
BanI	GGYRCC	2 cut(s)	1216, 1227
BauI	CACGAG	1 cut(s)	1461
BbsI	GAAGAC	3 cut(s)	528, 1155, 1319
Bbv12I	GWGCWC	2 cut(s)	394, 1468
BbvI	GCAGC	6 cut(s)	276, 313, 547, 550, 935, 1102
BccI	CCATC	4 cut(s)	685, 1034, 1207, 1375
BcgI	CGANNNNNNTGC	4 cut(s)	902, 936, 1434, 1468
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	4 cut(s)	345, 346, 647, 754
BcoDI	GTCTC	3 cut(s)	21, 662, 1382
BfaI	CTAG	6 cut(s)	171, 314, 605, 626, 1074, 1197
BfmI	CTRYAG	4 cut(s)	271, 825, 921, 1116
BfuAI	ACCTGC	1 cut(s)	748
BglI	GCCNNNNNGGC	2 cut(s)	1002, 1225
BisI	GCNGC	6 cut(s)	265, 302, 561, 564, 924, 1116
BlsI	GCNGC	6 cut(s)	266, 303, 562, 565, 925, 1117
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	4 cut(s)	345, 346, 647, 754
BmeT110I	CYCGRG	1 cut(s)	344
BmiI	GGNNCC	3 cut(s)	940, 1218, 1229
BmrFI	CCNGG	4 cut(s)	345, 346, 647, 754
BmsI	GCATC	4 cut(s)	898, 955, 1043, 1326
BpiI	GAAGAC	3 cut(s)	528, 1155, 1319
BplI	GAGNNNNNCTC	4 cut(s)	233, 265, 1379, 1411
BpmI	CTGGAG	1 cut(s)	1402
BpuEI	CTTGAG	2 cut(s)	70, 899
BpuMI	CCSGG	4 cut(s)	345, 346, 647, 754
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	344, 645, 1448
BsaXI	ACNNNNNCTCC	2 cut(s)	1440, 1470
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	4 cut(s)	116, 132, 712, 1110
BseDI	CCNNGG	3 cut(s)	344, 645, 1448
BseGI	GGATG	1 cut(s)	913
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	3 cut(s)	124, 806, 1377
BseNI	ACTGG	4 cut(s)	116, 132, 712, 1110
BseRI	GAGGAG	1 cut(s)	680
BseSI	GKGCMC	2 cut(s)	394, 1468
BseXI	GCAGC	6 cut(s)	276, 313, 547, 550, 935, 1102
BseYI	CCCAGC	1 cut(s)	739
Bsh1236I	CGCG	1 cut(s)	1070
Bsh1285I	CGRYCG	1 cut(s)	1454
BshFI	GGCC	2 cut(s)	876, 1162
BshNI	GGYRCC	2 cut(s)	1216, 1227
BsiEI	CGRYCG	1 cut(s)	1454
BsiHKAI	GWGCWC	2 cut(s)	394, 1468
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	4 cut(s)	345, 647, 753, 1349
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	3 cut(s)	21, 662, 1382
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	876, 1162
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	394, 1468
Bsp143I	GATC	4 cut(s)	88, 148, 316, 1243
BspANI	GGCC	2 cut(s)	876, 1162
BspCNI	CTCAG	3 cut(s)	123, 807, 1378
BspFNI	CGCG	1 cut(s)	1070
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	3 cut(s)	940, 1218, 1229
BspMAI	CTGCAG	2 cut(s)	925, 1120
BspMI	ACCTGC	1 cut(s)	748
BspT107I	GGYRCC	2 cut(s)	1216, 1227
BsrI	ACTGG	4 cut(s)	116, 132, 712, 1110
BssECI	CCNNGG	3 cut(s)	344, 645, 1448
BssMI	GATC	4 cut(s)	88, 148, 316, 1243
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	1461
Bst2BI	CACGAG	1 cut(s)	1461
Bst4CI	ACNGT	4 cut(s)	962, 1232, 1240, 1452
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	3 cut(s)	1032, 1084, 1346
BstDEI	CTNAG	4 cut(s)	110, 815, 1386, 1398
BstDSI	CCRYGG	1 cut(s)	1448
BstEII	GGTNACC	1 cut(s)	10
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	913
BstFNI	CGCG	1 cut(s)	1070
BstHHI	GCGC	2 cut(s)	1072, 1294
BstKTI	GATC	4 cut(s)	91, 151, 319, 1246
BstMAI	GTCTC	3 cut(s)	21, 662, 1382
BstMBI	GATC	4 cut(s)	88, 148, 316, 1243
BstMCI	CGRYCG	1 cut(s)	1454
BstMWI	GCNNNNNNNGC	9 cut(s)	895, 1002, 1031, 1115, 1225, 1289, 1345, 1354, 1363
BstNSI	RCATGY	3 cut(s)	1065, 1439, 1481
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	4 cut(s)	343, 344, 645, 752
BstSFI	CTRYAG	4 cut(s)	271, 825, 921, 1116
BstSLI	GKGCMC	2 cut(s)	394, 1468
BstUI	CGCG	1 cut(s)	1070
BstV1I	GCAGC	6 cut(s)	276, 313, 547, 550, 935, 1102
BstV2I	GAAGAC	3 cut(s)	528, 1155, 1319
BsuRI	GGCC	2 cut(s)	876, 1162
BtgI	CCRYGG	1 cut(s)	1448
BtsCI	GGATG	1 cut(s)	913
BtsI	GCAGTG	2 cut(s)	392, 1104
BtsIMutI	CAGTG	4 cut(s)	392, 967, 1104, 1117
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	3 cut(s)	1032, 1084, 1346
CaiI	CAGNNNCTG	1 cut(s)	270
CciI	TCATGA	1 cut(s)	949
CfoI	GCGC	2 cut(s)	1072, 1294
Cfr9I	CCCGGG	1 cut(s)	344
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	4 cut(s)	54, 335, 492, 1424
CviQI	GTAC	4 cut(s)	54, 335, 492, 1424
DdeI	CTNAG	4 cut(s)	110, 815, 1386, 1398
DpnI	GATC	4 cut(s)	90, 150, 318, 1245
DpnII	GATC	4 cut(s)	88, 148, 316, 1243
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	876
Eco88I	CYCGRG	1 cut(s)	344
Eco91I	GGTNACC	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	502
Esp3I	CGTCTC	1 cut(s)	21
FaqI	GGGAC	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	6 cut(s)	265, 302, 561, 564, 924, 1116
FokI	GGATG	1 cut(s)	920
Fsp4HI	GCNGC	6 cut(s)	265, 302, 561, 564, 924, 1116
FspAI	RTGCGCAY	1 cut(s)	1293
FspBI	CTAG	6 cut(s)	171, 314, 605, 626, 1074, 1197
FspI	TGCGCA	1 cut(s)	1293
GlaI	GCGC	2 cut(s)	1071, 1293
GluI	GCNGC	6 cut(s)	265, 302, 561, 564, 924, 1116
GsaI	CCCAGC	1 cut(s)	743
GsuI	CTGGAG	1 cut(s)	1402
HaeIII	GGCC	2 cut(s)	876, 1162
HapII	CCGG	4 cut(s)	345, 647, 753, 1349
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	2 cut(s)	1072, 1294
Hin1I	GRCGYC	1 cut(s)	30
Hin6I	GCGC	2 cut(s)	1070, 1292
HinP1I	GCGC	2 cut(s)	1070, 1292
HincII	GTYRAC	2 cut(s)	80, 1404
HindII	GTYRAC	2 cut(s)	80, 1404
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	9 cut(s)	306, 349, 368, 576, 650, 781, 953, 1261, 1415
HpaII	CCGG	4 cut(s)	345, 647, 753, 1349
HphI	GGTGA	5 cut(s)	545, 629, 670, 772, 1464
Hpy166II	GTNNAC	4 cut(s)	80, 392, 1404, 1466
Hpy188I	TCNGA	7 cut(s)	26, 93, 367, 958, 976, 1039, 1141
Hpy188III	TCNNGA	8 cut(s)	314, 411, 573, 605, 631, 778, 950, 1419
Hpy8I	GTNNAC	4 cut(s)	80, 392, 1404, 1466
HpyAV	CCTTC	3 cut(s)	147, 172, 655
HpyCH4III	ACNGT	4 cut(s)	962, 1232, 1240, 1452
HpyF10VI	GCNNNNNNNGC	9 cut(s)	895, 1002, 1031, 1115, 1225, 1289, 1345, 1354, 1363
HpyF3I	CTNAG	4 cut(s)	110, 815, 1386, 1398
Hsp92I	GRCGYC	1 cut(s)	30
HspAI	GCGC	2 cut(s)	1070, 1292
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	88, 148, 316, 1243
LmnI	GCTCC	2 cut(s)	209, 1461
Lsp1109I	GCAGC	6 cut(s)	276, 313, 547, 550, 935, 1102
LweI	GCATC	4 cut(s)	898, 955, 1043, 1326
MaeI	CTAG	6 cut(s)	171, 314, 605, 626, 1074, 1197
MaeIII	GTNAC	4 cut(s)	10, 764, 1064, 1102
MalI	GATC	4 cut(s)	90, 150, 318, 1245
MboI	GATC	4 cut(s)	88, 148, 316, 1243
MboII	GAAGA	9 cut(s)	33, 194, 197, 203, 533, 815, 1160, 1324, 1481
MhlI	GDGCHC	2 cut(s)	394, 1468
MluCI	AATT	3 cut(s)	195, 502, 1221
MlyI	GAGTC	5 cut(s)	315, 343, 962, 1270, 1409
MmeI	TCCRAC	3 cut(s)	356, 1193, 1259
MroXI	GAANNNNTTC	2 cut(s)	69, 464
MseI	TTAA	3 cut(s)	516, 594, 636
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	4 cut(s)	345, 647, 753, 1349
MspR9I	CCNGG	4 cut(s)	345, 346, 647, 754
MvnI	CGCG	1 cut(s)	1070
MwoI	GCNNNNNNNGC	9 cut(s)	895, 1002, 1031, 1115, 1225, 1289, 1345, 1354, 1363
NciI	CCSGG	4 cut(s)	345, 346, 647, 754
NdeII	GATC	4 cut(s)	88, 148, 316, 1243
NlaIV	GGNNCC	3 cut(s)	940, 1218, 1229
NmeAIII	GCCGAG	1 cut(s)	937
NmuCI	GTSAC	1 cut(s)	1102
NsbI	TGCGCA	1 cut(s)	1293
NspI	RCATGY	3 cut(s)	1065, 1439, 1481
PagI	TCATGA	1 cut(s)	949
PaqCI	CACCTGC	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	876
PciI	ACATGT	1 cut(s)	1061
PdmI	GAANNNNTTC	2 cut(s)	69, 464
PfeI	GAWTC	4 cut(s)	368, 576, 650, 781
PflFI	GACNNNGTC	1 cut(s)	1154
PkrI	GCNGC	6 cut(s)	266, 303, 562, 565, 925, 1117
PleI	GAGTC	5 cut(s)	314, 343, 961, 1269, 1409
PpsI	GAGTC	5 cut(s)	314, 343, 961, 1269, 1409
PscI	ACATGT	1 cut(s)	1061
PspEI	GGTNACC	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	739
PspN4I	GGNNCC	3 cut(s)	940, 1218, 1229
PstI	CTGCAG	2 cut(s)	925, 1120
PstNI	CAGNNNCTG	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	1154
RsaI	GTAC	4 cut(s)	55, 336, 493, 1425
RsaNI	GTAC	4 cut(s)	54, 335, 492, 1424
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	3 cut(s)	516, 594, 636
SatI	GCNGC	6 cut(s)	265, 302, 561, 564, 924, 1116
Sau3AI	GATC	4 cut(s)	88, 148, 316, 1243
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	5 cut(s)	315, 343, 962, 1270, 1409
ScrFI	CCNGG	4 cut(s)	345, 346, 647, 754
SduI	GDGCHC	2 cut(s)	394, 1468
SfaNI	GCATC	4 cut(s)	898, 955, 1043, 1326
SfcI	CTRYAG	4 cut(s)	271, 825, 921, 1116
SmaI	CCCGGG	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	49, 878
SmoI	CTYRAG	2 cut(s)	49, 878
Sse9I	AATT	3 cut(s)	195, 502, 1221
SseBI	AGGCCT	1 cut(s)	876
SspMI	CTAG	6 cut(s)	171, 314, 605, 626, 1074, 1197
StuI	AGGCCT	1 cut(s)	876
StyD4I	CCNGG	4 cut(s)	343, 344, 645, 752
TaaI	ACNGT	4 cut(s)	962, 1232, 1240, 1452
TaqI	TCGA	1 cut(s)	410
TasI	AATT	3 cut(s)	195, 502, 1221
TatI	WGTACW	3 cut(s)	53, 491, 1423
TfiI	GAWTC	4 cut(s)	368, 576, 650, 781
Tru1I	TTAA	3 cut(s)	516, 594, 636
Tru9I	TTAA	3 cut(s)	516, 594, 636
TscAI	CASTG	4 cut(s)	399, 967, 1111, 1117
TseFI	GTSAC	1 cut(s)	1102
TseI	GCWGC	6 cut(s)	264, 301, 560, 563, 923, 1115
Tsp45I	GTSAC	1 cut(s)	1102
TspDTI	ATGAA	9 cut(s)	33, 284, 338, 534, 642, 692, 1217, 1351, 1486
TspMI	CCCGGG	1 cut(s)	344
TspRI	CASTG	4 cut(s)	399, 967, 1111, 1117
Tth111I	GACNNNGTC	1 cut(s)	1154
VneI	GTGCAC	2 cut(s)	390, 1464
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	1 cut(s)	502
XbaI	TCTAGA	2 cut(s)	313, 604
XceI	RCATGY	3 cut(s)	1065, 1439, 1481
XmaI	CCCGGG	1 cut(s)	344
XmnI	GAANNNNTTC	2 cut(s)	69, 464
XspI	CTAG	6 cut(s)	171, 314, 605, 626, 1074, 1197
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.