Prupe.4G030900_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0006391
Physical Location & Seq
Forward (+)
1436353 .. 1439287
2935 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G030900.2

Sequence Viewer

Length: 1293 bp
ATGGCGGAGGAGTTTCAGGCCGGGATTTGTGGCAGCAGCTGGTGGAACACATCGAGACACGCGCTGGTGGCGTCGCCGTGTTCTGTGGGGTTTAATGATCATATAGGGAGCTTTGGCTGCCCAAATGACATGGTGGACATCAAGGCATCAAGGTCTTCTTGTGGTTTTGATCATTCATCTTCCCCGTCGTCAACACCCTCAGATTTGAACCAAGCTTTGCTCCTAAGTCGTAGTGGTGGTGGAAGAGCTGAGAGCAATTTTCATAATTCTATGCTCCAAGAAGGTGTAGGTGTTGATGAAGATTCGTCATCTCTAATAGATGGTTTCAAGCCCATGAGTCAAGATTTTTCTTTGGACCAATTAGGCTCATCATCTTCTTCTGGCTTTCCCATAACTTCATCATCCTCAGCTGCTAATTCCTATGGCTTCCCCTCAACATTGTTGCAAAGTATATTTGATTCTGAAGTATCCCAACCCCAACCCCAACAATCACTTTTCAACAATAATCACTTTTCAAATGACTTATTGTTACCTCCTTCTCCTACTAGTTCTTGTTGGCCACCCAGATACTCTTCTAGCAGCTGCCTAAGGCCCTCAGCAGTATCACTGCCAAAGCAATTACAACCTGGTGGTGGCGGCGGCGGCTTGCACTTTCCCAATAATATTAACACACCCTTCTGGAACACCCCAGCTGCCACCGCTCTAAATCATGGCAATAGTATTCGATCTAGTAATGGCCTTTTTTCCTCCTCACAATCACAATATACAGCACCTGCCTCTTCAGCACTAGTTCATGAACACAAACCTAATTCCCACAACTTTACTCCCAAGGGCAATACTAATGAGGATGTTCAAGACTCAAACTCTGTTGTAAAGAAAAGTGGGAGCAGCATGAGCAGCTGTGAACCTGTATTCAAAAGAGCTCGAATTGAAACACCTTCACCCTTACCGACTTTTAAGGTTCGGAAAGAGAAGCTCGGGGACCGGATTACTGCTCTCCAGCAATTGGTTTCGCCTTTCGGAAAGACTGATACAGCTTCTGTCCTTCACGAAGCTATTGAGTACATCAAATTCCTCCACGAACAAGTCAGTGTTTTAAGCACTCCATATATGAAAAATGGAGCCCCCATGCAACACCAACAGGGTAGTGATCATAAAATGAAGGAGGCAGAAGGAGCAAAACACGATCTAAAAAGCCGAGGACTGTGCTTGGTTCCGATTTCAAGCACCTTCCCGGTTGCTAATGAGACGACTGATTTTTGGACACCGACATTTGGAGCAACTTTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000820 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0001012 GO:0001067 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006521 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0032774 GO:0032870 GO:0033238 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042631 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2000214 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

431

Amino Acids

46.13

Weight (kDa)

6.3

Isoelectric Point (pI)

69.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 781
Acc36I ACCTGC 1 cut(s) 781
AccB7I CCANNNNNTGG 1 cut(s) 1006
AccBSI CCGCTC 1 cut(s) 701
AccII CGCG 1 cut(s) 62
AciI CCGC 5 cut(s) 5, 636, 639, 642, 699
AcoI YGGCCR 1 cut(s) 557
AcsI RAATTY 1 cut(s) 1070
AcuI CTGAAG 2 cut(s) 483, 765
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 1064
AfiI CCNNNNNNNGG 3 cut(s) 632, 1006, 1274
AgsI TTSAA 8 cut(s) 208, 328, 499, 516, 854, 916, 932, 1224
AhlI ACTAGT 2 cut(s) 545, 787
AjnI CCWGG 1 cut(s) 625
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 2 cut(s) 49, 1241
AlwNI CAGNNNCTG 3 cut(s) 39, 773, 1040
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 4 cut(s) 18, 557, 590, 736
ApeKI GCWGC 9 cut(s) 33, 36, 117, 410, 579, 582, 692, 888, 897
ApoI RAATTY 1 cut(s) 1070
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 3 cut(s) 355, 591, 982
AsuC2I CCSGG 2 cut(s) 22, 1235
AsuHPI GGTGA 1 cut(s) 933
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 2 cut(s) 355, 982
AxyI CCTNAGG 1 cut(s) 587
BalI TGGCCA 1 cut(s) 559
BanII GRGCYC 2 cut(s) 925, 1126
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 925
BbvCI CCTCAGC 2 cut(s) 406, 595
BbvI GCAGC 9 cut(s) 45, 48, 104, 397, 569, 591, 679, 900, 909
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 61
BcgI CGANNNNNNTGC 2 cut(s) 1188, 1222
BciT130I CCWGG 1 cut(s) 627
BciVI GTATCC 1 cut(s) 478
BclI TGATCA 3 cut(s) 97, 169, 1150
BcnI CCSGG 2 cut(s) 22, 1235
BcoDI GTCTC 2 cut(s) 49, 1241
BcuI ACTAGT 2 cut(s) 545, 787
BfaI CTAG 4 cut(s) 546, 576, 729, 788
BfuAI ACCTGC 1 cut(s) 781
BfuI GTATCC 1 cut(s) 478
Bme1390I CCNGG 3 cut(s) 22, 627, 1235
Bme18I GGWCC 2 cut(s) 355, 982
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 3 cut(s) 355, 591, 982
BmiI GGNNCC 3 cut(s) 983, 1123, 1215
BmrFI CCNGG 3 cut(s) 22, 627, 1235
BmsI GCATC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 983
Bpu10I CCTNAGC 2 cut(s) 406, 595
BpuMI CCSGG 2 cut(s) 22, 1235
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 828, 1198
BsaWI WCCGGW 1 cut(s) 984
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 1006, 1274
Bse21I CCTNAGG 1 cut(s) 587
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 2 cut(s) 828, 1198
BseGI GGATG 2 cut(s) 401, 853
BseLI CCNNNNNNNGG 3 cut(s) 632, 1006, 1274
BseMII CTCAG 4 cut(s) 213, 240, 420, 609
BseRI GAGGAG 2 cut(s) 23, 739
BseXI GCAGC 9 cut(s) 45, 48, 104, 397, 569, 591, 679, 900, 909
BseYI CCCAGC 1 cut(s) 688
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 4 cut(s) 20, 559, 592, 738
BsiHKAI GWGCWC 1 cut(s) 925
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 3 cut(s) 21, 985, 1235
BslFI GGGAC 1 cut(s) 995
BslI CCNNNNNNNGG 3 cut(s) 632, 1006, 1274
BsmAI GTCTC 2 cut(s) 49, 1241
BsmBI CGTCTC 1 cut(s) 1241
BsmFI GGGAC 1 cut(s) 995
BsnI GGCC 4 cut(s) 20, 559, 592, 738
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 2 cut(s) 925, 1126
Bsp143I GATC 5 cut(s) 97, 169, 725, 1150, 1186
BspACI CCGC 5 cut(s) 5, 636, 639, 642, 699
BspANI GGCC 4 cut(s) 20, 559, 592, 738
BspCNI CTCAG 4 cut(s) 212, 241, 419, 608
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 793
BspLI GGNNCC 3 cut(s) 983, 1123, 1215
BspMI ACCTGC 1 cut(s) 781
BspQI GCTCTTC 1 cut(s) 238
BsrBI CCGCTC 1 cut(s) 701
BssECI CCNNGG 2 cut(s) 828, 1198
BssMI GATC 5 cut(s) 97, 169, 725, 1150, 1186
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 828
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 1 cut(s) 1206
Bst6I CTCTTC 3 cut(s) 238, 577, 784
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 6 cut(s) 199, 224, 249, 406, 587, 595
BstF5I GGATG 2 cut(s) 401, 853
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 5 cut(s) 100, 172, 728, 1153, 1189
BstMAI GTCTC 2 cut(s) 49, 1241
BstMBI GATC 5 cut(s) 97, 169, 725, 1150, 1186
BstMWI GCNNNNNNNGC 8 cut(s) 68, 117, 642, 698, 782, 894, 897, 1175
BstNI CCWGG 1 cut(s) 627
BstSCI CCNGG 3 cut(s) 20, 625, 1233
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 9 cut(s) 45, 48, 104, 397, 569, 591, 679, 900, 909
BstV2I GAAGAC 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 587
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 4 cut(s) 20, 559, 592, 738
BtsCI GGATG 2 cut(s) 401, 853
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 2 cut(s) 605, 1096
BveI ACCTGC 1 cut(s) 781
Cac8I GCNNGC 1 cut(s) 647
CaiI CAGNNNCTG 3 cut(s) 39, 773, 1040
CciI TCATGA 1 cut(s) 793
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 3 cut(s) 355, 591, 982
CseI GACGC 1 cut(s) 60
CsiI ACCWGGT 1 cut(s) 625
Csp6I GTAC 1 cut(s) 1063
CviAII CATG 6 cut(s) 130, 334, 710, 794, 892, 1129
CviQI GTAC 1 cut(s) 1063
DdeI CTNAG 6 cut(s) 199, 224, 249, 406, 587, 595
DpnI GATC 5 cut(s) 99, 171, 727, 1152, 1188
DpnII GATC 5 cut(s) 97, 169, 725, 1150, 1186
EaeI YGGCCR 1 cut(s) 557
Eam1104I CTCTTC 3 cut(s) 238, 577, 784
EarI CTCTTC 3 cut(s) 238, 577, 784
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 923
Eco130I CCWWGG 1 cut(s) 828
Eco24I GRGCYC 2 cut(s) 925, 1126
Eco47I GGWCC 2 cut(s) 355, 982
Eco53kI GAGCTC 1 cut(s) 923
Eco57I CTGAAG 2 cut(s) 483, 765
Eco81I CCTNAGG 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 977
EcoICRI GAGCTC 1 cut(s) 923
EcoO109I RGGNCCY 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 828
EcoT38I GRGCYC 2 cut(s) 925, 1126
ErhI CCWWGG 1 cut(s) 828
Esp3I CGTCTC 1 cut(s) 1241
FaeI CATG 6 cut(s) 133, 337, 713, 797, 895, 1132
FalI AAGNNNNNCTT 2 cut(s) 142, 174
FaqI GGGAC 1 cut(s) 995
FatI CATG 6 cut(s) 129, 333, 709, 793, 891, 1128
FbaI TGATCA 3 cut(s) 97, 169, 1150
FokI GGATG 2 cut(s) 388, 860
FriOI GRGCYC 2 cut(s) 925, 1126
FspBI CTAG 4 cut(s) 546, 576, 729, 788
GlaI GCGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 692
GsuI CTGGAG 1 cut(s) 983
HaeIII GGCC 4 cut(s) 20, 559, 592, 738
HapII CCGG 3 cut(s) 21, 985, 1235
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 6 cut(s) 133, 337, 713, 797, 895, 1132
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 4 cut(s) 302, 337, 458, 857
HpaII CCGG 3 cut(s) 21, 985, 1235
HphI GGTGA 1 cut(s) 933
Hpy166II GTNNAC 3 cut(s) 136, 192, 905
Hpy188I TCNGA 5 cut(s) 202, 463, 966, 1022, 1218
Hpy188III TCNNGA 6 cut(s) 54, 341, 679, 794, 854, 1049
Hpy8I GTNNAC 3 cut(s) 136, 192, 905
Hpy99I CGWCG 2 cut(s) 76, 190
HpyAV CCTTC 8 cut(s) 275, 546, 685, 948, 1055, 1156, 1166, 1240
HpyCH4III ACNGT 1 cut(s) 1206
HpyCH4V TGCA 3 cut(s) 445, 649, 1132
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 117, 642, 698, 782, 894, 897, 1175
HpyF3I CTNAG 6 cut(s) 199, 224, 249, 406, 587, 595
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 6 cut(s) 133, 337, 713, 797, 895, 1132
HspAI GCGC 1 cut(s) 62
Ksp22I TGATCA 3 cut(s) 97, 169, 1150
Kzo9I GATC 5 cut(s) 97, 169, 725, 1150, 1186
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 7 cut(s) 108, 225, 279, 885, 1121, 1175, 1277
Lsp1109I GCAGC 9 cut(s) 45, 48, 104, 397, 569, 591, 679, 900, 909
LweI GCATC 1 cut(s) 155
MabI ACCWGGT 1 cut(s) 625
MaeI CTAG 4 cut(s) 546, 576, 729, 788
MaeIII GTNAC 1 cut(s) 528
MalI GATC 5 cut(s) 99, 171, 727, 1152, 1188
MbiI CCGCTC 1 cut(s) 701
MboI GATC 5 cut(s) 97, 169, 725, 1150, 1186
MboII GAAGA 8 cut(s) 147, 171, 255, 311, 366, 369, 564, 771
MfeI CAATTG 1 cut(s) 1004
MhlI GDGCHC 2 cut(s) 925, 1126
MlsI TGGCCA 1 cut(s) 559
MluCI AATT 9 cut(s) 256, 265, 359, 415, 617, 808, 927, 1004, 1070
MluNI TGGCCA 1 cut(s) 559
MlyI GAGTC 2 cut(s) 346, 851
Mox20I TGGCCA 1 cut(s) 559
MscI TGGCCA 1 cut(s) 559
MseI TTAA 4 cut(s) 93, 666, 957, 1097
Msp20I TGGCCA 1 cut(s) 559
MspA1I CMGCKG 5 cut(s) 39, 410, 582, 692, 900
MspI CCGG 3 cut(s) 21, 985, 1235
MspR9I CCNGG 3 cut(s) 22, 627, 1235
MunI CAATTG 1 cut(s) 1004
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 8 cut(s) 68, 117, 642, 698, 782, 894, 897, 1175
NciI CCSGG 2 cut(s) 22, 1235
NdeII GATC 5 cut(s) 97, 169, 725, 1150, 1186
NlaIII CATG 6 cut(s) 133, 337, 713, 797, 895, 1132
NlaIV GGNNCC 3 cut(s) 983, 1123, 1215
NmeAIII GCCGAG 1 cut(s) 1223
PagI TCATGA 1 cut(s) 793
PaqCI CACCTGC 1 cut(s) 781
PciSI GCTCTTC 1 cut(s) 238
PfeI GAWTC 2 cut(s) 302, 458
PflMI CCANNNNNTGG 1 cut(s) 1006
PleI GAGTC 2 cut(s) 345, 851
PpsI GAGTC 2 cut(s) 345, 851
Psp124BI GAGCTC 1 cut(s) 925
Psp6I CCWGG 1 cut(s) 625
PspFI CCCAGC 1 cut(s) 688
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 3 cut(s) 983, 1123, 1215
PspPI GGNCC 3 cut(s) 355, 591, 982
PstNI CAGNNNCTG 3 cut(s) 39, 773, 1040
PvuII CAGCTG 5 cut(s) 39, 410, 582, 692, 900
RsaI GTAC 1 cut(s) 1064
RsaNI GTAC 1 cut(s) 1063
SacI GAGCTC 1 cut(s) 925
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 4 cut(s) 93, 666, 957, 1097
Sau3AI GATC 5 cut(s) 97, 169, 725, 1150, 1186
Sau96I GGNCC 3 cut(s) 355, 591, 982
SchI GAGTC 2 cut(s) 346, 851
ScrFI CCNGG 3 cut(s) 22, 627, 1235
SduI GDGCHC 2 cut(s) 925, 1126
SexAI ACCWGGT 1 cut(s) 625
SfaNI GCATC 1 cut(s) 155
SinI GGWCC 2 cut(s) 355, 982
SpeI ACTAGT 2 cut(s) 545, 787
Sse9I AATT 9 cut(s) 256, 265, 359, 415, 617, 808, 927, 1004, 1070
SsiI CCGC 5 cut(s) 5, 636, 639, 642, 699
SspI AATATT 1 cut(s) 664
SspMI CTAG 4 cut(s) 546, 576, 729, 788
SstI GAGCTC 1 cut(s) 925
StyD4I CCNGG 3 cut(s) 20, 625, 1233
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 1 cut(s) 1206
TaqI TCGA 3 cut(s) 53, 724, 925
TasI AATT 9 cut(s) 256, 265, 359, 415, 617, 808, 927, 1004, 1070
TatI WGTACW 1 cut(s) 1062
TauI GCSGC 3 cut(s) 639, 642, 645
TfiI GAWTC 2 cut(s) 302, 458
Tru1I TTAA 4 cut(s) 93, 666, 957, 1097
Tru9I TTAA 4 cut(s) 93, 666, 957, 1097
TscAI CASTG 2 cut(s) 612, 1096
TseI GCWGC 9 cut(s) 33, 36, 117, 410, 579, 582, 692, 888, 897
TspDTI ATGAA 8 cut(s) 165, 251, 312, 387, 782, 810, 1127, 1175
TspRI CASTG 2 cut(s) 612, 1096
Van91I CCANNNNNTGG 1 cut(s) 1006
VpaK11BI GGWCC 2 cut(s) 355, 982
XapI RAATTY 1 cut(s) 1070
XspI CTAG 4 cut(s) 546, 576, 729, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.