Rorug04G0414100

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006391
Physical Location & Seq
Forward (+)
57573154 .. 57574774
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0414100.1

Sequence Viewer

Length: 294 bp
ATGGCAAAGCGCCTCATGCCAACCCTCAACCGTGTTCTTATAGAGAAAATCGTCCCACCCTCCAAAACCACCGCCGGCATTCTCTTACCGGAGTCATCCGCCAAGCTGAACTCGGGGAAGGTGGTTGCTGTTGGACCAGGAACTAAGGATAAGACCGGAAATGCGATCCCAGTGGCTGTGAAAGAAGGTGACACTGTTCTGTTGCCCGAATATGGTGGCACCCAAGTTAAGCTTGGTGACAAAGAGTTCCATTTGTACCGGGATGAGGACATTTTGGGCACTCTCCATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000820 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0001012 GO:0001067 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006521 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0032774 GO:0032870 GO:0033238 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042631 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2000214 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.36

Weight (kDa)

7.99

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn10 PF00166 6 - 94 5.9e-25 Chaperonin 10 Kd subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AciI CCGC 2 cut(s) 72, 99
AclWI GGATC 1 cut(s) 160
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 212, 265
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 106, 232
AluI AGCT 2 cut(s) 106, 232
AlwI GGATC 1 cut(s) 160
AlwNI CAGNNNCTG 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 112
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 200, 248
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 138, 260
Bme18I GGWCC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 138, 260
BmrI ACTGGG 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 260
BsaWI WCCGGW 2 cut(s) 88, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 265
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 95, 268
BseLI CCNNNNNNNGG 2 cut(s) 212, 265
BseNI ACTGG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 4 cut(s) 75, 89, 156, 259
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 212, 265
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 2 cut(s) 72, 99
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 32, 196
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 95, 268
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 136, 258
BstSLI GKGCMC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 95, 268
BtsIMutI CAGTG 2 cut(s) 177, 192
Cac8I GCNNGC 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 176
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 16, 287
CviJI RGCY 3 cut(s) 106, 176, 232
CviKI_1 RGCY 3 cut(s) 106, 176, 232
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
EciI GGCGGA 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 19, 290
FaiI YATR 4 cut(s) 17, 41, 213, 288
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 38
FatI CATG 2 cut(s) 15, 286
FokI GGATG 2 cut(s) 82, 275
GlaI GCGC 1 cut(s) 11
HaeII RGCGCY 1 cut(s) 13
HapII CCGG 4 cut(s) 75, 89, 156, 259
HhaI GCGC 1 cut(s) 12
Hin1II CATG 2 cut(s) 19, 290
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 92
HpaII CCGG 4 cut(s) 75, 89, 156, 259
HphI GGTGA 2 cut(s) 200, 248
HpyAV CCTTC 2 cut(s) 112, 179
HpyCH4III ACNGT 2 cut(s) 32, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 2 cut(s) 19, 290
HspAI GCGC 1 cut(s) 10
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 7 cut(s) 88, 102, 123, 150, 169, 183, 272
MaeIII GTNAC 2 cut(s) 188, 236
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 281
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 4 cut(s) 23, 35, 70, 259
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 1 cut(s) 228
MspI CCGG 4 cut(s) 75, 89, 156, 259
MspR9I CCNGG 2 cut(s) 138, 260
Mva1269I GAATGC 1 cut(s) 78
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 16
NaeI GCCGGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 260
NdeII GATC 1 cut(s) 165
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 19, 290
NlaIV GGNNCC 1 cut(s) 220
NmuCI GTSAC 2 cut(s) 188, 236
PctI GAATGC 1 cut(s) 78
PdiI GCCGGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 138, 260
SduI GDGCHC 1 cut(s) 281
SetI ASST 4 cut(s) 108, 123, 190, 234
SinI GGWCC 1 cut(s) 134
SsiI CCGC 2 cut(s) 72, 99
StyD4I CCNGG 2 cut(s) 136, 258
TaaI ACNGT 2 cut(s) 32, 196
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 2 cut(s) 177, 199
TseFI GTSAC 2 cut(s) 188, 236
Tsp45I GTSAC 2 cut(s) 188, 236
TspRI CASTG 2 cut(s) 177, 199
VpaK11BI GGWCC 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.