Rh5BG041800

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006391
Physical Location & Seq
Forward (+)
3070531 .. 3073778
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG041800.1

Sequence Viewer

Length: 1065 bp
ATGGCAGAGGAGTATCAGGGCGGGATTTGCGGTGGCAACTGGTGGAGCAGTGCATCGAGACATGCGCTCGTGGCGACGTCGCCGTGTGCTGTAGGTTTCAATGATCATATGGGAAGCTTTGGCTGCCCGAACGACGTGGACATGATCAAGTCAAGGTCTACTTGCGGCGGTTTTGGTCTTAATTCATCGTCTTCCGCACTGCCCTCAGATTTGAACCAAGCGTTGCTCCTTCGCAGTAGTAGTGGAAGAGGTGAGAGCAATTTTCATAATTCCATGCTCCAAGAAGAAATGGGTTCTTTCAAGCAGCCTATGAATAATCAAGATTTTCCATTAGACCAAAGCAGCTCCTCCTCTGGGTTTCCTATAACCTCATCGCCAGCTAATAATTCTTACGGTGGGGGCTTCCCTTCACAATTGCTGCAAAGTTTGTATGATCCGGAAGAAGTAGTTGTACCCCAACCACAGCTACAATCACTATTCAACAACGGCTCGTCATCCATGAGTTATTCTTCAGCTGAAAGTTATGGCACACTTGGTTCCAATGATTTATTATCATCACCAACTTCTAGTACTACCTGTTGGCCTAGATACTCTCCCAGCTGCCTAAGACCTTCCCTGCAGCCAAGGCAACAACAACAACAACAACCCAGAGGCGGCAGTGGCAGTGGCGGTGGCGGTGGATTGCACTTTTCGAATATTAATACACCCTTCTGGAATGCTCCCGCGGCCGCTCTAAACCATGACATACGATCAACTGGTCTTTTCCCCTCATTGTCACAGTCACAATATACAGCACCTACTGCAGCAATATATGATGAACATAAACCCATTACTTCCGGTAACTTCACTAAGCCCACTACTAATGAAGATGTTCAGGACTCGAGCTCCAGTACAGTCAAGAAGAGCGGCAGCAGCTTCTGTAGTAGTACTGAACCAGTATTCAAAAGAGCTCGGATTGAAACACCTTCACCATTACCGACTTTTAAGGTACCACAGTCGAACCAAAACTTTCCGATGATCGAGTTTTTCTTTTACCTTGACAGAGTTGTTTTTAGTTTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000820 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0001012 GO:0001067 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006521 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0032774 GO:0032870 GO:0033238 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042631 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2000214 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

38.03

Weight (kDa)

5.5

Isoelectric Point (pI)

78.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 80
Acc65I GGTACC 1 cut(s) 988
AccB1I GGYRCC 1 cut(s) 988
AccBSI CCGCTC 2 cut(s) 731, 906
AccI GTMKAC 1 cut(s) 158
AccII CGCG 1 cut(s) 725
AccIII TCCGGA 1 cut(s) 436
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 726
AcuI CTGAAG 1 cut(s) 495
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 5 cut(s) 453, 571, 892, 928, 990
AfiI CCNNNNNNNGG 2 cut(s) 354, 653
AgsI TTSAA 6 cut(s) 100, 214, 301, 481, 943, 959
AjiI CACGTC 1 cut(s) 136
AluBI AGCT 9 cut(s) 117, 345, 380, 466, 515, 600, 885, 915, 950
AluI AGCT 9 cut(s) 117, 345, 380, 466, 515, 600, 885, 915, 950
Alw21I GWGCWC 2 cut(s) 887, 952
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 428
AlwNI CAGNNNCTG 1 cut(s) 918
Ama87I CYCGRG 1 cut(s) 880
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 2 cut(s) 581, 726
ApeKI GCWGC 9 cut(s) 123, 304, 342, 418, 600, 619, 803, 909, 912
AseI ATTAAT 1 cut(s) 699
Asp700I GAANNNNTTC 1 cut(s) 870
Asp718I GGTACC 1 cut(s) 988
AspLEI GCGC 1 cut(s) 67
AsuHPI GGTGA 3 cut(s) 263, 549, 960
AsuII TTCGAA 1 cut(s) 692
AvaI CYCGRG 1 cut(s) 880
BaeI ACNNNNGTAYC 2 cut(s) 980, 1013
BanI GGYRCC 1 cut(s) 988
BanII GRGCYC 2 cut(s) 887, 952
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 887, 952
BbvI GCAGC 9 cut(s) 110, 316, 354, 405, 587, 631, 815, 921, 924
BceAI ACGGC 2 cut(s) 67, 502
BclI TGATCA 2 cut(s) 103, 144
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 2 cut(s) 567, 585
BfmI CTRYAG 4 cut(s) 90, 617, 801, 919
BmcAI AGTACT 2 cut(s) 571, 928
BmeT110I CYCGRG 1 cut(s) 880
BmgBI CACGTC 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 538, 990
BmsI GCATC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 871
Bpu14I TTCGAA 1 cut(s) 692
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 623, 723
BsaWI WCCGGW 2 cut(s) 436, 836
BsaXI ACNNNNNCTCC 2 cut(s) 869, 899
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 653
Bse1I ACTGG 4 cut(s) 44, 760, 888, 935
BseAI TCCGGA 1 cut(s) 436
BseDI CCNNGG 2 cut(s) 623, 723
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 354, 653
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 4 cut(s) 44, 760, 888, 935
BseRI GAGGAG 3 cut(s) 23, 337, 340
BseX3I CGGCCG 1 cut(s) 726
BseXI GCAGC 9 cut(s) 110, 316, 354, 405, 587, 631, 815, 921, 924
BseYI CCCAGC 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 725
Bsh1285I CGRYCG 1 cut(s) 729
BshFI GGCC 2 cut(s) 583, 728
BshNI GGYRCC 1 cut(s) 988
BsiEI CGRYCG 1 cut(s) 729
BsiHKAI GWGCWC 2 cut(s) 887, 952
BsiHKCI CYCGRG 1 cut(s) 880
BsiSI CCGG 2 cut(s) 437, 837
BslI CCNNNNNNNGG 2 cut(s) 354, 653
BsmAI GTCTC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 2 cut(s) 583, 728
BsoBI CYCGRG 1 cut(s) 880
Bsp119I TTCGAA 1 cut(s) 692
Bsp1286I GDGCHC 2 cut(s) 887, 952
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 5 cut(s) 103, 144, 433, 749, 1017
BspANI GGCC 2 cut(s) 583, 728
BspCNI CTCAG 1 cut(s) 218
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 1 cut(s) 725
BspLI GGNNCC 2 cut(s) 538, 990
BspMAI CTGCAG 2 cut(s) 621, 805
BspPI GGATC 1 cut(s) 428
BspQI GCTCTTC 1 cut(s) 896
BspT104I TTCGAA 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 988
BsrBI CCGCTC 2 cut(s) 731, 906
BsrI ACTGG 4 cut(s) 44, 760, 888, 935
BssECI CCNNGG 2 cut(s) 623, 723
BssMI GATC 5 cut(s) 103, 144, 433, 749, 1017
BssNI GRCGYC 1 cut(s) 77
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 623
Bst2BI CACGAG 1 cut(s) 68
Bst4CI ACNGT 4 cut(s) 395, 780, 895, 996
Bst6I CTCTTC 2 cut(s) 241, 896
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 800
BstBI TTCGAA 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 3 cut(s) 205, 605, 849
BstDSI CCRYGG 1 cut(s) 723
BstF5I GGATG 1 cut(s) 494
BstFNI CGCG 1 cut(s) 725
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 5 cut(s) 106, 147, 436, 752, 1020
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 5 cut(s) 103, 144, 433, 749, 1017
BstMCI CGRYCG 1 cut(s) 729
BstMWI GCNNNNNNNGC 8 cut(s) 27, 71, 123, 625, 660, 725, 800, 912
BstNSI RCATGY 1 cut(s) 65
BstSFI CTRYAG 4 cut(s) 90, 617, 801, 919
BstUI CGCG 1 cut(s) 725
BstV1I GCAGC 9 cut(s) 110, 316, 354, 405, 587, 631, 815, 921, 924
BstV2I GAAGAC 1 cut(s) 183
BstZI CGGCCG 1 cut(s) 726
BsuRI GGCC 2 cut(s) 583, 728
BtgI CCRYGG 1 cut(s) 723
BtgZI GCGATG 1 cut(s) 357
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 494
BtsI GCAGTG 4 cut(s) 55, 197, 664, 670
BtsIMutI CAGTG 4 cut(s) 55, 197, 664, 670
Cac8I GCNNGC 1 cut(s) 378
CaiI CAGNNNCTG 1 cut(s) 918
CciNI GCGGCCGC 1 cut(s) 726
CfoI GCGC 1 cut(s) 67
Cfr42I CCGCGG 1 cut(s) 726
Csp6I GTAC 5 cut(s) 452, 570, 891, 927, 989
CviAII CATG 5 cut(s) 62, 142, 274, 499, 740
CviQI GTAC 5 cut(s) 452, 570, 891, 927, 989
DdeI CTNAG 3 cut(s) 205, 605, 849
DpnI GATC 5 cut(s) 105, 146, 435, 751, 1019
DpnII GATC 5 cut(s) 103, 144, 433, 749, 1017
EaeI YGGCCR 1 cut(s) 726
EagI CGGCCG 1 cut(s) 726
Eam1104I CTCTTC 2 cut(s) 241, 896
EarI CTCTTC 2 cut(s) 241, 896
Ecl136II GAGCTC 2 cut(s) 885, 950
EclXI CGGCCG 1 cut(s) 726
Eco130I CCWWGG 1 cut(s) 623
Eco24I GRGCYC 2 cut(s) 887, 952
Eco52I CGGCCG 1 cut(s) 726
Eco53kI GAGCTC 2 cut(s) 885, 950
Eco57I CTGAAG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 880
EcoICRI GAGCTC 2 cut(s) 885, 950
EcoT14I CCWWGG 1 cut(s) 623
EcoT38I GRGCYC 2 cut(s) 887, 952
ErhI CCWWGG 1 cut(s) 623
FaeI CATG 5 cut(s) 65, 145, 277, 502, 743
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FatI CATG 5 cut(s) 61, 141, 273, 498, 739
FauI CCCGC 2 cut(s) 14, 730
FauNDI CATATG 1 cut(s) 108
FbaI TGATCA 2 cut(s) 103, 144
FblI GTMKAC 1 cut(s) 158
FokI GGATG 1 cut(s) 481
FriOI GRGCYC 2 cut(s) 887, 952
FspBI CTAG 2 cut(s) 567, 585
GlaI GCGC 1 cut(s) 66
GsaI CCCAGC 1 cut(s) 600
GsuI CTGGAG 1 cut(s) 871
HaeIII GGCC 2 cut(s) 583, 728
HapII CCGG 2 cut(s) 437, 837
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 5 cut(s) 65, 145, 277, 502, 743
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 1 cut(s) 878
HpaII CCGG 2 cut(s) 437, 837
HphI GGTGA 3 cut(s) 263, 549, 960
Hpy166II GTNNAC 2 cut(s) 139, 159
Hpy188I TCNGA 3 cut(s) 208, 954, 1014
Hpy188III TCNNGA 6 cut(s) 57, 320, 437, 712, 875, 898
Hpy8I GTNNAC 2 cut(s) 139, 159
Hpy99I CGWCG 3 cut(s) 79, 82, 137
HpyAV CCTTC 5 cut(s) 239, 417, 621, 718, 975
HpyCH4III ACNGT 4 cut(s) 395, 780, 895, 996
HpyCH4IV ACGT 2 cut(s) 77, 135
HpyCH4V TGCA 5 cut(s) 53, 421, 619, 685, 803
HpyF10VI GCNNNNNNNGC 8 cut(s) 27, 71, 123, 625, 660, 725, 800, 912
HpyF3I CTNAG 3 cut(s) 205, 605, 849
HpySE526I ACGT 2 cut(s) 77, 135
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 5 cut(s) 65, 145, 277, 502, 743
HspAI GCGC 1 cut(s) 65
Kpn2I TCCGGA 1 cut(s) 436
KpnI GGTACC 1 cut(s) 992
Ksp22I TGATCA 2 cut(s) 103, 144
KspI CCGCGG 1 cut(s) 726
Kzo9I GATC 5 cut(s) 103, 144, 433, 749, 1017
LguI GCTCTTC 1 cut(s) 896
LmnI GCTCC 6 cut(s) 45, 231, 282, 350, 724, 890
Lsp1109I GCAGC 9 cut(s) 110, 316, 354, 405, 587, 631, 815, 921, 924
LweI GCATC 1 cut(s) 62
MaeI CTAG 2 cut(s) 567, 585
MaeII ACGT 2 cut(s) 77, 135
MaeIII GTNAC 3 cut(s) 774, 780, 839
MalI GATC 5 cut(s) 105, 146, 435, 751, 1019
MbiI CCGCTC 2 cut(s) 731, 906
MboI GATC 5 cut(s) 103, 144, 433, 749, 1017
MboII GAAGA 7 cut(s) 183, 258, 296, 452, 501, 878, 913
MfeI CAATTG 1 cut(s) 413
MhlI GDGCHC 2 cut(s) 887, 952
MluCI AATT 5 cut(s) 181, 259, 268, 385, 413
MlyI GAGTC 1 cut(s) 872
MnlI CCTC 7 cut(s) 214, 242, 358, 361, 379, 644, 778
MroI TCCGGA 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 870
MseI TTAA 4 cut(s) 180, 699, 984, 1063
MspA1I CMGCKG 3 cut(s) 515, 600, 725
MspI CCGG 2 cut(s) 437, 837
MunI CAATTG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 721
MvnI CGCG 1 cut(s) 725
MwoI GCNNNNNNNGC 8 cut(s) 27, 71, 123, 625, 660, 725, 800, 912
NdeI CATATG 1 cut(s) 108
NdeII GATC 5 cut(s) 103, 144, 433, 749, 1017
NlaIII CATG 5 cut(s) 65, 145, 277, 502, 743
NlaIV GGNNCC 2 cut(s) 538, 990
NmuCI GTSAC 2 cut(s) 774, 780
NotI GCGGCCGC 1 cut(s) 726
NspI RCATGY 1 cut(s) 65
NspV TTCGAA 1 cut(s) 692
PaeR7I CTCGAG 1 cut(s) 880
PciSI GCTCTTC 1 cut(s) 896
PctI GAATGC 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 870
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
PshBI ATTAAT 1 cut(s) 699
Psp124BI GAGCTC 2 cut(s) 887, 952
PspFI CCCAGC 1 cut(s) 596
PspN4I GGNNCC 2 cut(s) 538, 990
PspXI VCTCGAGB 1 cut(s) 880
PstI CTGCAG 2 cut(s) 621, 805
PstNI CAGNNNCTG 1 cut(s) 918
PvuII CAGCTG 2 cut(s) 515, 600
RsaI GTAC 5 cut(s) 453, 571, 892, 928, 990
RsaNI GTAC 5 cut(s) 452, 570, 891, 927, 989
SacI GAGCTC 2 cut(s) 887, 952
SacII CCGCGG 1 cut(s) 726
SapI GCTCTTC 1 cut(s) 896
SaqAI TTAA 4 cut(s) 180, 699, 984, 1063
Sau3AI GATC 5 cut(s) 103, 144, 433, 749, 1017
ScaI AGTACT 2 cut(s) 571, 928
SchI GAGTC 1 cut(s) 872
SduI GDGCHC 2 cut(s) 887, 952
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 4 cut(s) 90, 617, 801, 919
Sfr274I CTCGAG 1 cut(s) 880
Sfr303I CCGCGG 1 cut(s) 726
SfuI TTCGAA 1 cut(s) 692
SgrBI CCGCGG 1 cut(s) 726
SlaI CTCGAG 1 cut(s) 880
SmlI CTYRAG 1 cut(s) 880
SmoI CTYRAG 1 cut(s) 880
Sse9I AATT 5 cut(s) 181, 259, 268, 385, 413
SspI AATATT 1 cut(s) 697
SspMI CTAG 2 cut(s) 567, 585
SstI GAGCTC 2 cut(s) 887, 952
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 4 cut(s) 395, 780, 895, 996
TaiI ACGT 2 cut(s) 80, 138
TaqI TCGA 5 cut(s) 56, 692, 881, 998, 1020
TasI AATT 5 cut(s) 181, 259, 268, 385, 413
TatI WGTACW 3 cut(s) 569, 890, 926
TauI GCSGC 5 cut(s) 168, 657, 728, 731, 909
Tru1I TTAA 4 cut(s) 180, 699, 984, 1063
Tru9I TTAA 4 cut(s) 180, 699, 984, 1063
TscAI CASTG 4 cut(s) 55, 204, 664, 670
TseFI GTSAC 2 cut(s) 774, 780
TseI GCWGC 9 cut(s) 123, 304, 342, 418, 600, 619, 803, 909, 912
Tsp45I GTSAC 2 cut(s) 774, 780
TspDTI ATGAA 5 cut(s) 174, 254, 326, 831, 879
TspRI CASTG 4 cut(s) 55, 204, 664, 670
VspI ATTAAT 1 cut(s) 699
XceI RCATGY 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 880
XmiI GTMKAC 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 870
XspI CTAG 2 cut(s) 567, 585
ZraI GACGTC 1 cut(s) 78
ZrmI AGTACT 2 cut(s) 571, 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.