Prupe.4G042400_v2.0.a1

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014505
Physical Location & Seq
Forward (+)
1998989 .. 2001255
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G042400.1

Sequence Viewer

Length: 546 bp
ATGGCTTCAACGGCTTTATTGGTTGTCGTGTTTGTATCTGATCTGATTGCTTTTGCCCTTGCTGTTGCTGCTGAGCAACGAAGGTCCAGTGCCAAGATTCAAACTCTAGCAAATTCCAGCTATTGTGTATATGATTCTGACATTGCAACTGGCTTAGGTGCGGGGTCGTTTCTGTTCCTGTTGGCAAGTCAAGTTCTTATAATGGGGGTAAGTCGATGCTTGTGCTGTGGAAAGGCTTTGAGACCCAGCGGTTCTAGGTCATGGGCAATCATGCTCTTCATCACCTGCTGGGTGTTTTTTCTTATTGCTGAGGCATGCCTTCTTGCGGGTTCAGTGAGAAACGCGTACCACACCAAGTATAGGACTGTGTTTACGAACGGAAAACTATCGTGTGAGACATTGAGGAAAGGAATCTTTGGGGCTGGGGCTGCCTTTGTCGTCTTCACGGGGATATTCTCCGAGCTTTATTATGTTAGCTATTCCAGGGCTAACGAACTGGAGACTCCCTATAGCCGAGACACTGGCGTGAGGATGCAGAACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

182

Amino Acids

19.67

Weight (kDa)

9.05

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61065
fragaria_vesca FvH4_3g04720
prunus_persica Prupe.4G042400_v2.0.a1 Prupe.4G042400_v2.0.a1
pyrus_communis pycom05g29480
rosa_chinensis RchiOBHm_Chr5g0007741
rosa_laevigata RLG00000031483
rosa_multiflora Rmu_sc0005098.1_g000021
rosa_roxburghii Rroxscaffold_1G00068670
rosa_rugosa Rorug04G0429800 Rorug04G0429900 Rorug04G0430000
rosa_samantha Rh5AG058300 Rh5BG055100 Rh5CG064800 Rh5DG054100
rosa_wichuraiana Rw5G006140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AarI CACCTGC 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 293
AccII CGCG 1 cut(s) 344
AciI CCGC 3 cut(s) 161, 249, 326
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 325, 360
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 2 cut(s) 9, 101
AjnI CCWGG 1 cut(s) 482
AleI CACNNNNGTG 1 cut(s) 524
AluBI AGCT 3 cut(s) 120, 463, 477
AluI AGCT 3 cut(s) 120, 463, 477
Alw26I GTCTC 4 cut(s) 235, 389, 494, 510
ApeKI GCWGC 2 cut(s) 68, 428
ApoI RAATTY 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 433
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 55, 415
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciT130I CCWGG 1 cut(s) 484
BcoDI GTCTC 4 cut(s) 235, 389, 494, 510
BfaI CTAG 2 cut(s) 107, 255
BfmI CTRYAG 1 cut(s) 508
BfuAI ACCTGC 1 cut(s) 293
BisI GCNGC 2 cut(s) 69, 429
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 2 cut(s) 70, 430
Bme1390I CCNGG 1 cut(s) 484
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 484
BmsI GCATC 2 cut(s) 206, 522
BpiI GAAGAC 1 cut(s) 433
BpmI CTGGAG 1 cut(s) 518
Bpu10I CCTNAGC 2 cut(s) 154, 309
Bpu1102I GCTNAGC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 483
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 360
Bse1I ACTGG 4 cut(s) 87, 154, 501, 526
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 2 cut(s) 325, 360
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 63, 300
BseNI ACTGG 4 cut(s) 87, 154, 501, 526
BseXI GCAGC 2 cut(s) 55, 415
BseYI CCCAGC 3 cut(s) 245, 288, 422
Bsh1236I CGCG 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 325, 360
BsmAI GTCTC 4 cut(s) 235, 389, 494, 510
Bso31I GGTCTC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 40
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 3 cut(s) 161, 249, 326
BspCNI CTCAG 2 cut(s) 64, 301
BspFNI CGCG 1 cut(s) 344
BspMI ACCTGC 1 cut(s) 293
BspQI GCTCTTC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 4 cut(s) 87, 154, 501, 526
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 3 cut(s) 72, 154, 309
BstF5I GGATG 1 cut(s) 537
BstFNI CGCG 1 cut(s) 344
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 4 cut(s) 235, 389, 494, 510
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 3 cut(s) 11, 68, 428
BstNI CCWGG 1 cut(s) 484
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 482
BstSFI CTRYAG 1 cut(s) 508
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 55, 415
BstV2I GAAGAC 1 cut(s) 433
BtsCI GGATG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 94, 339, 519
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 346
CviAII CATG 3 cut(s) 261, 271, 315
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 3 cut(s) 72, 154, 309
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 482
FaeI CATG 3 cut(s) 264, 274, 318
FaiI YATR 9 cut(s) 130, 132, 200, 262, 272, 316, 360, 471, 510
FatI CATG 3 cut(s) 260, 270, 314
FauI CCCGC 2 cut(s) 154, 319
Fnu4HI GCNGC 2 cut(s) 69, 429
Fsp4HI GCNGC 2 cut(s) 69, 429
FspBI CTAG 2 cut(s) 107, 255
GluI GCNGC 2 cut(s) 69, 429
GsaI CCCAGC 3 cut(s) 249, 292, 426
GsuI CTGGAG 1 cut(s) 518
Hin1II CATG 3 cut(s) 264, 274, 318
HinfI GANTC 4 cut(s) 97, 134, 411, 502
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 4 cut(s) 40, 45, 139, 460
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 2 cut(s) 75, 329
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 2 cut(s) 146, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 68, 428
HpyF3I CTNAG 3 cut(s) 72, 154, 309
Hsp92II CATG 3 cut(s) 264, 274, 318
Kzo9I GATC 1 cut(s) 40
LguI GCTCTTC 1 cut(s) 281
Lsp1109I GCAGC 2 cut(s) 55, 415
LweI GCATC 2 cut(s) 206, 522
MaeI CTAG 2 cut(s) 107, 255
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 2 cut(s) 268, 433
MluCI AATT 1 cut(s) 112
MluI ACGCGT 1 cut(s) 342
MlyI GAGTC 1 cut(s) 496
MnlI CCTC 3 cut(s) 304, 396, 522
MseI TTAA 1 cut(s) 544
MslI CAYNNNNRTG 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 484
MvaI CCWGG 1 cut(s) 484
MvnI CGCG 1 cut(s) 344
MwoI GCNNNNNNNGC 3 cut(s) 11, 68, 428
NdeII GATC 1 cut(s) 40
NlaIII CATG 3 cut(s) 264, 274, 318
NmeAIII GCCGAG 1 cut(s) 539
NspI RCATGY 1 cut(s) 318
OliI CACNNNNGTG 1 cut(s) 524
PaeI GCATGC 1 cut(s) 318
PaqCI CACCTGC 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 97, 134, 411
PkrI GCNGC 2 cut(s) 70, 430
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
PsiI TTATAA 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 482
PspFI CCCAGC 3 cut(s) 245, 288, 422
PspGI CCWGG 1 cut(s) 482
PspPI GGNCC 1 cut(s) 84
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 544
SatI GCNGC 2 cut(s) 69, 429
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 484
SetI ASST 8 cut(s) 86, 122, 160, 260, 287, 465, 479, 543
SfaNI GCATC 2 cut(s) 206, 522
SfcI CTRYAG 1 cut(s) 508
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 524
SphI GCATGC 1 cut(s) 318
Sse9I AATT 1 cut(s) 112
SsiI CCGC 3 cut(s) 161, 249, 326
SspMI CTAG 2 cut(s) 107, 255
StyD4I CCNGG 1 cut(s) 482
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 1 cut(s) 214
TasI AATT 1 cut(s) 112
TfiI GAWTC 3 cut(s) 97, 134, 411
Tru1I TTAA 1 cut(s) 544
Tru9I TTAA 1 cut(s) 544
TscAI CASTG 3 cut(s) 94, 339, 526
TseI GCWGC 2 cut(s) 68, 428
TspDTI ATGAA 1 cut(s) 268
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 3 cut(s) 94, 339, 526
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 112
XceI RCATGY 1 cut(s) 318
XspI CTAG 2 cut(s) 107, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.