Rh5BG055100

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014505
Physical Location & Seq
Forward (+)
4497367 .. 4501981
4615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG055100.1

Sequence Viewer

Length: 495 bp
ATGTCTGGTCCTAATTCCTCTATGATTTCTCCCTGGCAGTCTAAGATTCAGAAAGATGGAAATTCCAGCTACTGTGTGTATGACTCCGACATTGCCACCGGCTTAGGTGTTGGGGCATTTCTGTTCCTGTTGACAAGTCAGGCTCTGTTAATGATTGTAAGTCGATGCTTGTGCTGTGGAAAGGCTTTGAGACCGAGTGGTTCTAGGTCATGGGCAATCATGCTATTCATTACCAGCTGGGTATTTTTCTGTATTGCTGAGGCGTGCTTACTTGCGGGTTCAGTGAGAAATGCCTACCACACCAAGTACAGGACTAAGTTACCTACTGAAAACCTTTCATGTGAGACATTGAGGAAGGGGATCTTCGGGGCTGGCGCTGCCTTTGTGGTCTTCACAGGCATAGTCTCTGAGTTCTACTATGCTAGTTACTCCAAGGCTAATGATGCAGAGGCTCACTACGCCAGAGACACTGGAGTGAGGATGCAGAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

164

Amino Acids

17.93

Weight (kDa)

8.87

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1218 PF06749 39 - 133 2e-30 Protein of unknown function (DUF1218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61065
fragaria_vesca FvH4_3g04720
prunus_persica Prupe.4G042400_v2.0.a1 Prupe.4G042400_v2.0.a1
pyrus_communis pycom05g29480
rosa_chinensis RchiOBHm_Chr5g0007741
rosa_laevigata RLG00000031483
rosa_multiflora Rmu_sc0005098.1_g000021
rosa_roxburghii Rroxscaffold_1G00068670
rosa_rugosa Rorug04G0429800 Rorug04G0429900 Rorug04G0430000
rosa_samantha Rh5AG058300 Rh5BG055100 Rh5CG064800 Rh5DG054100
rosa_wichuraiana Rw5G006140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 61
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 309
AjnI CCWGG 1 cut(s) 32
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 2 cut(s) 69, 237
AluI AGCT 2 cut(s) 69, 237
Alw26I GTCTC 4 cut(s) 184, 338, 409, 459
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 2 cut(s) 72, 145
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 61
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 382
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciT130I CCWGG 1 cut(s) 34
BcoDI GTCTC 4 cut(s) 184, 338, 409, 459
BfaI CTAG 2 cut(s) 204, 423
BfoI RGCGCY 1 cut(s) 378
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 3 cut(s) 155, 433, 471
BpiI GAAGAC 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 492
Bpu10I CCTNAGC 2 cut(s) 103, 258
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 32, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 32, 432
BseGI GGATG 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 249, 399
BseNI ACTGG 1 cut(s) 475
BseXI GCAGC 1 cut(s) 364
BseYI CCCAGC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 4 cut(s) 184, 338, 409, 459
Bso31I GGTCTC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 360
BspACI CCGC 1 cut(s) 275
BspCNI CTCAG 2 cut(s) 250, 400
BspPI GGATC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 32, 432
BssMI GATC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 265, 373
BstDEI CTNAG 5 cut(s) 42, 103, 258, 315, 408
BstF5I GGATG 1 cut(s) 486
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 1 cut(s) 363
BstMAI GTCTC 4 cut(s) 184, 338, 409, 459
BstMBI GATC 1 cut(s) 360
BstMWI GCNNNNNNNGC 3 cut(s) 377, 443, 458
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 364
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BtsCI GGATG 1 cut(s) 486
BtsIMutI CAGTG 2 cut(s) 288, 468
Cac8I GCNNGC 2 cut(s) 265, 373
CaiI CAGNNNCTG 2 cut(s) 72, 145
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 307
CviAII CATG 3 cut(s) 210, 220, 339
CviJI RGCY 8 cut(s) 69, 102, 143, 185, 237, 371, 437, 452
CviKI_1 RGCY 8 cut(s) 69, 102, 143, 185, 237, 371, 437, 452
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 5 cut(s) 42, 103, 258, 315, 408
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 432
Eco31I GGTCTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 3 cut(s) 213, 223, 342
FaiI YATR 7 cut(s) 23, 81, 211, 221, 340, 401, 420
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FatI CATG 3 cut(s) 209, 219, 338
FauI CCCGC 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 2 cut(s) 204, 423
GlaI GCGC 1 cut(s) 376
GluI GCNGC 1 cut(s) 378
GsaI CCCAGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 378
HapII CCGG 1 cut(s) 99
HhaI GCGC 1 cut(s) 377
Hin1II CATG 3 cut(s) 213, 223, 342
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 2 cut(s) 46, 83
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 3 cut(s) 51, 88, 409
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 446, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 443, 458
HpyF3I CTNAG 5 cut(s) 42, 103, 258, 315, 408
Hsp92II CATG 3 cut(s) 213, 223, 342
HspAI GCGC 1 cut(s) 375
Kzo9I GATC 1 cut(s) 360
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 3 cut(s) 155, 433, 471
MaeI CTAG 2 cut(s) 204, 423
MaeIII GTNAC 2 cut(s) 318, 425
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MboII GAAGA 2 cut(s) 355, 382
MflI RGATCY 1 cut(s) 360
MluCI AATT 2 cut(s) 13, 61
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 5 cut(s) 28, 253, 345, 442, 471
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 3 cut(s) 377, 443, 458
NdeII GATC 1 cut(s) 360
NlaIII CATG 3 cut(s) 213, 223, 342
OliI CACNNNNGTG 1 cut(s) 473
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 237
PspGI CCWGG 1 cut(s) 32
PspPI GGNCC 1 cut(s) 8
PstNI CAGNNNCTG 2 cut(s) 72, 145
PsuI RGATCY 1 cut(s) 360
PvuII CAGCTG 1 cut(s) 237
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 1 cut(s) 360
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 34
SetI ASST 7 cut(s) 71, 109, 209, 239, 325, 336, 492
SfaNI GCATC 3 cut(s) 155, 433, 471
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 2 cut(s) 13, 61
SsiI CCGC 1 cut(s) 275
SspMI CTAG 2 cut(s) 204, 423
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 163
TaqII GACCGA 1 cut(s) 208
TasI AATT 2 cut(s) 13, 61
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 2 cut(s) 288, 475
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 217, 327
TspRI CASTG 2 cut(s) 288, 475
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 61
XspI CTAG 2 cut(s) 204, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.